Guide to the Human Genome
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Name: LOC100290351 Sequence: fasta or formatted (155aa) NCBI GI: 239750950
Description:

PREDICTED: hypothetical protein XP_002347615

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         22           2
 C cysteine            4.5          7           1
 D aspartate           5.2          8           2
 E glutamate           2.6          4           1
 F phenylalanine       1.3          2           1
 G glycine            11.0         17           1
 H histidine           2.6          4           1
 I isoleucine          0.0          0           0
 K lysine              1.3          2           1
 L leucine            16.8         26           3
 M methionine          1.3          2           1
 N asparagine          0.0          0           0
 P proline             7.7         12           2
 Q glutamine           4.5          7           1
 R arginine            4.5          7           1
 S serine              9.0         14           2
 T threonine           5.2          8           1
 V valine              3.2          5           1
 W tryptophan          3.2          5           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347615 
LOC100293192          1.000   PREDICTED: hypothetical protein 
LOC100287175          1.000   PREDICTED: hypothetical protein XP_002343445 
FAM22G                0.027   hypothetical protein LOC441457 
LOC100129103          0.023   PREDICTED: similar to hCG2038970 
LOC100129103          0.023   PREDICTED: similar to hCG2038970 
LOC100129103          0.023   PREDICTED: similar to hCG2038970 
TBC1D10B              0.017   TBC1 domain family, member 10B 
ZFP92                 0.017   zinc finger protein 92 homolog 
SHANK1                0.017   SH3 and multiple ankyrin repeat domains 1 
FAM22F                0.017   hypothetical protein LOC54754 
LOC100132891          0.013   PREDICTED: hypothetical protein 
LOC100132891          0.013   PREDICTED: hypothetical protein 
LOC100132891          0.013   PREDICTED: hypothetical protein 
EPPK1                 0.013   epiplakin 1 
CLEC14A               0.013   C-type lectin domain family 14, member A 
ZFHX2                 0.010   PREDICTED: zinc finger homeobox 2 
LOC100289074          0.010   PREDICTED: hypothetical protein XP_002343632 
PCSK4                 0.010   proprotein convertase subtilisin/kexin type 4 
LOC100292188          0.010   PREDICTED: hypothetical protein 
LOC100288824          0.010   PREDICTED: hypothetical protein 
LOC100288824          0.010   PREDICTED: hypothetical protein XP_002343711 
GAS2L1                0.010   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.010   growth arrest-specific 2 like 1 isoform a 
ZDHHC8                0.010   zinc finger, DHHC domain containing 8 
FAM108C1              0.010   hypothetical protein LOC58489 
FFAR1                 0.007   free fatty acid receptor 1 
PHF21A                0.007   BRAF35/HDAC2 complex isoform b 
PHF21A                0.007   BRAF35/HDAC2 complex isoform a 
ZNF598                0.007   zinc finger protein 598 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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