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Search of human proteins with 239750624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo
sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756093 PREDICTED: hypothetical protein [Homo sapiens] 717 0.0
gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo ... 717 0.0
gi|239744931 PREDICTED: hypothetical protein XP_002343311 [Homo ... 180 2e-45
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 36 0.057
gi|57864582 hornerin [Homo sapiens] 35 0.075
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 35 0.075
gi|56090582 immunity-related GTPase family, Q [Homo sapiens] 35 0.075
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 35 0.13
gi|66730423 hypothetical protein LOC389384 [Homo sapiens] 34 0.17
gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens] 34 0.22
gi|28416911 interleukin 28 receptor, alpha isoform 3 [Homo sapiens] 34 0.22
gi|28416909 interleukin 28 receptor, alpha isoform 2 [Homo sapiens] 34 0.22
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 34 0.22
gi|45504380 jumonji domain containing 2B [Homo sapiens] 33 0.37
gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo ... 33 0.37
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 33 0.48
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 32 0.63
gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo ... 32 0.63
gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo ... 32 0.63
gi|150378549 tangerin [Homo sapiens] 32 0.83
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 32 1.1
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo... 32 1.1
gi|61742793 lymphocyte-specific protein 1 isoform 2 [Homo sapiens] 32 1.1
gi|61742791 lymphocyte-specific protein 1 isoform 2 [Homo sapiens] 32 1.1
gi|61742789 lymphocyte-specific protein 1 isoform 2 [Homo sapiens] 32 1.1
gi|10880979 lymphocyte-specific protein 1 isoform 1 [Homo sapiens] 32 1.1
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 32 1.1
gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens] 32 1.1
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 31 1.4
gi|239757646 PREDICTED: similar to phosphatidylinositol 4-kinase... 31 1.4
>gi|239756093 PREDICTED: hypothetical protein [Homo sapiens]
Length = 343
Score = 717 bits (1851), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MGATHRWALVGLSWVTYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPF 60
MGATHRWALVGLSWVTYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPF
Sbjct: 1 MGATHRWALVGLSWVTYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPF 60
Query: 61 LAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEA 120
LAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEA
Sbjct: 61 LAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEA 120
Query: 121 DDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDK 180
DDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDK
Sbjct: 121 DDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDK 180
Query: 181 EDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSSGQVVTRA 240
EDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSSGQVVTRA
Sbjct: 181 EDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSSGQVVTRA 240
Query: 241 PAYHFHPSAHLTIRSSEKQTKRMRRKRRKHLDDEVGEKNQEGAGFIVFEGGDCRESPTSF 300
PAYHFHPSAHLTIRSSEKQTKRMRRKRRKHLDDEVGEKNQEGAGFIVFEGGDCRESPTSF
Sbjct: 241 PAYHFHPSAHLTIRSSEKQTKRMRRKRRKHLDDEVGEKNQEGAGFIVFEGGDCRESPTSF 300
Query: 301 SISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 343
SISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII
Sbjct: 301 SISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 343
>gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo
sapiens]
Length = 343
Score = 717 bits (1851), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MGATHRWALVGLSWVTYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPF 60
MGATHRWALVGLSWVTYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPF
Sbjct: 1 MGATHRWALVGLSWVTYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPF 60
Query: 61 LAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEA 120
LAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEA
Sbjct: 61 LAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEA 120
Query: 121 DDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDK 180
DDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDK
Sbjct: 121 DDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDK 180
Query: 181 EDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSSGQVVTRA 240
EDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSSGQVVTRA
Sbjct: 181 EDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSSGQVVTRA 240
Query: 241 PAYHFHPSAHLTIRSSEKQTKRMRRKRRKHLDDEVGEKNQEGAGFIVFEGGDCRESPTSF 300
PAYHFHPSAHLTIRSSEKQTKRMRRKRRKHLDDEVGEKNQEGAGFIVFEGGDCRESPTSF
Sbjct: 241 PAYHFHPSAHLTIRSSEKQTKRMRRKRRKHLDDEVGEKNQEGAGFIVFEGGDCRESPTSF 300
Query: 301 SISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 343
SISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII
Sbjct: 301 SISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 343
>gi|239744931 PREDICTED: hypothetical protein XP_002343311 [Homo
sapiens]
Length = 173
Score = 180 bits (456), Expect = 2e-45
Identities = 105/169 (62%), Positives = 111/169 (65%), Gaps = 39/169 (23%)
Query: 214 DTPLW----REHGHLSHGAGAPS-SGQVVTRAPAYHFHPS-------AHLTIRSSEKQTK 261
D+ W RE SH + S S +++ R PS +HLTIRSSEKQTK
Sbjct: 5 DSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTK 64
Query: 262 RMRRKRRK---------------------------HLDDEVGEKNQEGAGFIVFEGGDCR 294
RMRRKRRK HLDDEVGEKNQEGAGFIVFEGGDCR
Sbjct: 65 RMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEGAGFIVFEGGDCR 124
Query: 295 ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 343
ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII
Sbjct: 125 ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 173
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 35.8 bits (81), Expect = 0.057
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 41/170 (24%)
Query: 93 PISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLE 152
P SP P G + Q L + Q+E + + +QP P +E + Q
Sbjct: 754 PSSPPPLWAGLAKQGLSMKTLLELQLEGERQLHKQP-------------PPREPARAQAP 800
Query: 153 AH-VQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQHLGA 211
H VQ G G V AG G + GGG+ G LG
Sbjct: 801 NHRVQLGGLGTAPLNQWVSEAGPLWGGPDKSGGGSSG--------------------LGL 840
Query: 212 FQDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPSAHLTIRSSEKQTK 261
++DTP + G L G G +S + + +Y +HL+ R K+T+
Sbjct: 841 WEDTP--KSGGSLVRGLGLKNSRSSPSLSDSY-----SHLSGRPIRKKTE 883
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 35.4 bits (80), Expect = 0.075
Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 26/146 (17%)
Query: 95 SPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE------GAGCRQPQQEQQQ 148
S H G G C+ G G+ F Q G + G+G Q QQ
Sbjct: 1768 SQHGSGSG----HFCSQGQHGST-SGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQ 1822
Query: 149 LQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQH 208
G+G+ R HG+G+GH G G+S S R Q
Sbjct: 1823 --------GSGSGQSPSRGR-HGSGSGHSSSYGQHGSGSGWSSS-----SGRHGSGSGQS 1868
Query: 209 LG-AFQDTPLWREHGHLSHGAGAPSS 233
G ++ W+ G+ HG+G+ S
Sbjct: 1869 SGFGHHESSSWQSSGYTQHGSGSGHS 1894
Score = 35.4 bits (80), Expect = 0.075
Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 26/146 (17%)
Query: 95 SPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE------GAGCRQPQQEQQQ 148
S H G G C+ G G+ F Q G + G+G Q QQ
Sbjct: 2238 SQHGSGSG----HFCSQGQHGST-SGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQ 2292
Query: 149 LQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQH 208
G+G+ R HG+G+GH G G+S S R Q
Sbjct: 2293 --------GSGSGQSPSRGR-HGSGSGHSSSYGQHGSGSGWSSS-----SGRHGSGSGQS 2338
Query: 209 LG-AFQDTPLWREHGHLSHGAGAPSS 233
G ++ W+ G+ HG+G+ S
Sbjct: 2339 SGFGHHESSSWQSSGYTQHGSGSGHS 2364
Score = 34.7 bits (78), Expect = 0.13
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 156 QKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGY-SQSWSCGHQARQCRQPVQHLGAFQD 214
Q E ++ + HG+G+GH + G G S S G +RQ QH A +
Sbjct: 350 QHESGSGQSSGYSKHGSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQHESASRH 409
Query: 215 TPLWREH--------GHLSHGAG---APSSGQ 235
+ +H GH G+G +PSSGQ
Sbjct: 410 SSGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQ 441
Score = 32.7 bits (73), Expect = 0.48
Identities = 33/140 (23%), Positives = 48/140 (34%), Gaps = 14/140 (10%)
Query: 95 SPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAH 154
S H G G C+ G G+ F Q G + + + Q H
Sbjct: 1298 SQHGSGSG----HFCSQGQHGST-SGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRH 1352
Query: 155 VQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQHLG-AFQ 213
G+G+ R HG+G+GH G G+S S R Q G
Sbjct: 1353 --GAGSGQSPSRGR-HGSGSGHSSSYGQHGSGSGWSSS-----SGRHGSGSGQSSGFGHH 1404
Query: 214 DTPLWREHGHLSHGAGAPSS 233
++ W+ G HG+G+ S
Sbjct: 1405 ESSSWQSSGCTQHGSGSGHS 1424
Score = 32.0 bits (71), Expect = 0.83
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 157 KEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQH----LGAF 212
+E ++ HG+ +GH G A G QS SCG Q H G+
Sbjct: 1993 RESRSGQSSGYGQHGSSSGHSSTHGQHGSASG--QSSSCGQHGASSGQSSSHGQHGSGSS 2050
Query: 213 QDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPS 248
Q + R+ G G ++P+Y H S
Sbjct: 2051 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGS 2086
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 157 KEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQH----LGAF 212
+E ++ HG+ +GH G G QS SCG Q H G+
Sbjct: 1053 RESRSGQSSGYGQHGSSSGHSSTHGQHGSTSG--QSSSCGQHGASSGQSSSHGQHGSGSS 1110
Query: 213 QDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPS 248
Q + R+ G G ++P+Y H S
Sbjct: 1111 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGS 1146
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 157 KEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQH----LGAF 212
+E ++ HG+ +GH G G QS SCG Q H G+
Sbjct: 1523 RESRSGQSSGYGQHGSSSGHSSTHGQHGSTSG--QSSSCGQHGASSGQSSSHGQHGSGSS 1580
Query: 213 QDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPS 248
Q + R+ G G ++P+Y H S
Sbjct: 1581 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGS 1616
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 157 KEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQH----LGAF 212
+E ++ HG+ +GH G G QS SCG Q H G+
Sbjct: 2463 RESRSGQSSGYGQHGSSSGHSSTHGQHGSTSG--QSSSCGQHGASSGQSSSHGQHGSGSS 2520
Query: 213 QDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPS 248
Q + R+ G G ++P+Y H S
Sbjct: 2521 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGS 2556
Score = 29.6 bits (65), Expect = 4.1
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 136 GAGCRQPQQEQQQLQLEAHV-QKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWS 194
G+ R Q Q H Q G+G R HG+G+GH G G S S
Sbjct: 2154 GSSSRYGQHGSGSRQSSGHGRQGSGSGHSPSRGR-HGSGSGHSSSHGQHGSGSGRSSSRG 2212
Query: 195 CGHQARQCRQPV--QHLGAFQDTPLWREHG-----HLSHGAGAPSSGQVVT 238
+++R V QH + + +HG S G +SGQ T
Sbjct: 2213 -PYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSST 2262
Score = 29.3 bits (64), Expect = 5.4
Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 125 FRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNG----HGKDK 180
F G G Q + Q ++ Q E A A HG+G+G HG+
Sbjct: 838 FSSQGRHGSTSGQSSSSGQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGHGQRG 897
Query: 181 EDGGGAQGY----SQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSS 233
G + Y S S R Q G + + G+ HG+G+ S
Sbjct: 898 SGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHS 954
Score = 28.9 bits (63), Expect = 7.0
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 157 KEGAGEEAQRAAVH---GAGNGHGKDKEDGGGAQGYSQSWSC-GHQARQCR--------- 203
+ G+G + H G+G G + + G QGYSQ S GH + Q R
Sbjct: 793 QHGSGTSCSSSCGHYESGSGQASGFGQHESGSGQGYSQHGSASGHFSSQGRHGSTSGQSS 852
Query: 204 QPVQHLGAFQDTPLWREHGHLSH---GAGAPSSG 234
QH + + + +H SH G G SG
Sbjct: 853 SSGQHDSSSGQSSSYGQHESASHHASGRGRHGSG 886
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 35.4 bits (80), Expect = 0.075
Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 114 QGAQIEADDEAFRQPGMGVQEEGAGCRQPQQ---EQQQLQLEAHVQKEGAGEE------- 163
QG Q D+ + G G E G G +QPQ +QQQ Q + KE AG+
Sbjct: 136 QGFQEGEDELGDEEEGAG-DENGHGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLF 194
Query: 164 AQRAAVHGAGNGH----GKDKEDGGGAQG 188
A A GA G GK K +GGG G
Sbjct: 195 AVTVAPPGARQGQQQAGGKKKAEGGGGGG 223
>gi|56090582 immunity-related GTPase family, Q [Homo sapiens]
Length = 623
Score = 35.4 bits (80), Expect = 0.075
Identities = 40/168 (23%), Positives = 59/168 (35%), Gaps = 33/168 (19%)
Query: 50 MDQGDPLLSPFLAFSLPPCRPPLPS----HFALWVIQVGEARTALLYPISPHPRG----- 100
+D GDP +P S+P P P+ + LW + +G TA + HP
Sbjct: 245 LDPGDPGAAPA---SVPTAPTPFPAPERPNVVLWTVPLGHTGTATTAAAASHPTHYDALI 301
Query: 101 ---PGT-------SVQQLCTPGVQGAQIEADDEA----------FRQP-GMGVQEEGAGC 139
PG VQ L P + D E P G ++ G G
Sbjct: 302 LVTPGAPTEKDWAQVQALLLPDAPLVCVRTDGEGEDPECLGEGKMENPKGESLKNAGGGG 361
Query: 140 RQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQ 187
+ + + + A QK G+GE +A G G K GG ++
Sbjct: 362 LENALSKGREKCSAGSQKAGSGEGPGKAGSEGLQQVVGMKKSGGGDSE 409
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 34.7 bits (78), Expect = 0.13
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 114 QGAQIEADDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAG 173
+G E + E + G G +EEG G + + E+ + + E + EG GEE + G
Sbjct: 832 EGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGE-EGEGEGEE-EEGEGEGEE 889
Query: 174 NGHGKDKEDGGGAQGYSQSWSCGHQ 198
G G+ +E+ G +G + G +
Sbjct: 890 EGEGEGEEEEGEGEGEEEGEGEGEE 914
Score = 34.3 bits (77), Expect = 0.17
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 119 EADDEAFRQPGMGVQEEGAGCRQPQ--QEQQQLQLEAHVQKEGAGEEAQRAAVHG----- 171
E + E G G +EEG G + + +E+ + + E + EG GEE + V G
Sbjct: 969 EGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGE 1028
Query: 172 AGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQDT 215
G G G+++E + + R + + G +Q+T
Sbjct: 1029 EGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEGKYQET 1072
Score = 32.7 bits (73), Expect = 0.48
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 114 QGAQIEADDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAG 173
+G + E + E G G +EEG + + E+++ + E + EG GEE + G
Sbjct: 931 EGEEEEGEGEGEDGEGEGEEEEG----EWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEG 986
Query: 174 NGHGKDKE 181
G G+++E
Sbjct: 987 EGEGEEEE 994
Score = 32.3 bits (72), Expect = 0.63
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 114 QGAQIEADDEAFRQ-PGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGA 172
+G + E + E + G G +EEG G + + E + + E + E GEE +
Sbjct: 877 EGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEE 936
Query: 173 GNGHGKDKEDGG 184
G G G+D E G
Sbjct: 937 GEGEGEDGEGEG 948
Score = 31.2 bits (69), Expect = 1.4
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 114 QGAQIEADDEAFRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAG 173
+G + E +++ G EE G R+ ++ +++ + A +++G E Q
Sbjct: 742 EGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEET 801
Query: 174 NGHGKDKEDGGGAQG 188
G G++KE+GG +G
Sbjct: 802 EGRGEEKEEGGEVEG 816
Score = 30.4 bits (67), Expect = 2.4
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 30/144 (20%)
Query: 81 IQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEA-----------FRQPG 129
+ G+A++ P RG GT C G GA+ D+E +PG
Sbjct: 636 VSEGKAKSVGEAEDGPEGRGDGT-----CEEGSSGAEHWQDEEREKGEKDKGRGEMERPG 690
Query: 130 MGVQE--------EGAGCRQPQQEQQQ-LQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDK 180
G +E + G Q Q+E++Q Q E + + E GEE HG G D+
Sbjct: 691 EGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEE-----HGEGEEEEGDR 745
Query: 181 EDGGGAQGYSQSWSCGHQARQCRQ 204
E+ +G + G + R+
Sbjct: 746 EEEEEKEGEGKEEGEGEEVEGERE 769
Score = 29.3 bits (64), Expect = 5.4
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 119 EADDEAFRQPGMGVQEEGAGCRQPQQ---EQQQLQLEAHVQKEGAGE----EAQRAAVHG 171
E + E + G G E+G G + ++ E ++ + E ++EG GE E + G
Sbjct: 927 EGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEG 986
Query: 172 AGNGHGKDKEDGGGAQG 188
G G ++ E+ G +G
Sbjct: 987 EGEGEEEEGEEEGEEEG 1003
>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
Length = 652
Score = 34.3 bits (77), Expect = 0.17
Identities = 56/248 (22%), Positives = 91/248 (36%), Gaps = 45/248 (18%)
Query: 23 KEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPPLPSHFALWVIQ 82
K G EE + G + S PE P S FL + RP + S + L +
Sbjct: 303 KHGSEEAKRGAA-------DVSSPEA----WPPKKSSFLPLCVSGHRPSISSSYGLEEPK 351
Query: 83 VGEARTA-------LLYPISPHPRGPGTSVQ-----------QLCTPGVQGAQIEADDEA 124
V EA + + P + PG + Q +Q A+ + +E
Sbjct: 352 VQEAPSTEAGAPGPSVLPTPSESQEPGEELPLDRASEYKEFIQKIISMLQDAEEQQGEEQ 411
Query: 125 --FRQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDKED 182
+Q +GV+ CR+ QE++ A K+ +E +RA GA + + +
Sbjct: 412 PQVQQEEVGVENPAPHCRRKSQEKRSSFRRAFYHKKHTSKEPRRAGAAGAASPEARRPKR 471
Query: 183 GG------GAQGYSQSWSCGHQARQCRQPVQHLG---AFQDTPLWREHGHLSHGA----G 229
G S S S + +CR+P+ G + P + GH GA G
Sbjct: 472 PSFLPLCVGGHRPSTSSSLDPEDLECREPLPAEGEPVVISEAPS-QARGHTPEGAPQLSG 530
Query: 230 APSSGQVV 237
A S +++
Sbjct: 531 ACESKEII 538
>gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens]
Length = 520
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 46 PEGAMDQGDPLLSPFLAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPH 97
P + Q + +LS + LPPC PPL + + + G A L+P++PH
Sbjct: 128 PVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEG-AGNKTLFPVTPH 178
>gi|28416911 interleukin 28 receptor, alpha isoform 3 [Homo sapiens]
Length = 244
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 46 PEGAMDQGDPLLSPFLAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPH 97
P + Q + +LS + LPPC PPL + + + G A L+P++PH
Sbjct: 128 PVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEG-AGNKTLFPVTPH 178
>gi|28416909 interleukin 28 receptor, alpha isoform 2 [Homo sapiens]
Length = 491
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 46 PEGAMDQGDPLLSPFLAFSLPPCRPPLPSHFALWVIQVGEARTALLYPISPH 97
P + Q + +LS + LPPC PPL + + + G A L+P++PH
Sbjct: 128 PVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEG-AGNKTLFPVTPH 178
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 33.9 bits (76), Expect = 0.22
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 126 RQPGMGVQEEGAGCRQ----PQQEQQQLQLEAHVQKEGAG--------EEAQRAAVHGAG 173
+QP G Q++ G +Q PQ QQ Q + G G +++ ++ G+G
Sbjct: 132 QQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSG 191
Query: 174 NGHG-KDKEDGGGAQGYSQ 191
G+G +D+ GGG+ GY Q
Sbjct: 192 GGYGNQDQSGGGGSGGYGQ 210
>gi|45504380 jumonji domain containing 2B [Homo sapiens]
Length = 1096
Score = 33.1 bits (74), Expect = 0.37
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 21 QDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPFLAFS---------LPPCRPP 71
+++ G E D E + L EGA + G L P A S LPP PP
Sbjct: 409 KEEAGPEVDPEEEEEEPQPLPHGREAEGAEEDGRGKLRPTKAKSERKKKSFGLLPPQLPP 468
Query: 72 LPSHF----ALWVIQVGEARTALLYPISPHPRGPGTSVQQ 107
P+HF ALW L P+ P GPG + +
Sbjct: 469 PPAHFPSEEALW----------LPSPLEPPVLGPGPAAME 498
>gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
Length = 1246
Score = 33.1 bits (74), Expect = 0.37
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 219 REHGHLSHGAGAPSSGQVVTRAPAYHFHPSAHLTIRSSEKQTKRM 263
RE +H A APS+G A H HP H + + KQ ++
Sbjct: 262 REQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLRKQVSKV 306
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 32.7 bits (73), Expect = 0.48
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 126 RQPGMGVQEEGAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRA--AVHGAGNGH 176
+Q G G + G G Q Q +QQQ Q + Q++ ++ QR VH A N H
Sbjct: 110 QQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHH 162
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 32.3 bits (72), Expect = 0.63
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 171 GAGNGHGKDKEDG-GGAQGYSQSWSCGHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAG 229
G GH + G GG G+ GH+ R P H D P GH H G
Sbjct: 840 GGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGG 899
Query: 230 APSSGQVVTRAPAYHF 245
G + R HF
Sbjct: 900 HSHGGDMSNRPVCRHF 915
>gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo
sapiens]
Length = 1562
Score = 32.3 bits (72), Expect = 0.63
Identities = 41/176 (23%), Positives = 61/176 (34%), Gaps = 11/176 (6%)
Query: 16 TYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPPLPSH 75
TYL QD+ EEEDE G + G Q L+P L P P
Sbjct: 1134 TYL-QQDELEEEEDERGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEE 1192
Query: 76 FALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE 135
Q R + P P P P + + P V +A +E +E+
Sbjct: 1193 TGHMQHQPDRRRQPVSPPPPPRPISPPHTYGYISGPLVSDMDTDAPEE---------EED 1243
Query: 136 GAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAG-NGHGKDKEDGGGAQGYS 190
A + + ++L L Q + ++V G+ NG G E+ + G S
Sbjct: 1244 EADMEVAKMQTRRLLLRGLEQTPASSVGDLESSVTGSMINGWGSASEEDNISSGRS 1299
>gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo
sapiens]
Length = 1615
Score = 32.3 bits (72), Expect = 0.63
Identities = 41/176 (23%), Positives = 61/176 (34%), Gaps = 11/176 (6%)
Query: 16 TYLASQDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPPLPSH 75
TYL QD+ EEEDE G + G Q L+P L P P
Sbjct: 1187 TYL-QQDELEEEEDERGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEE 1245
Query: 76 FALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE 135
Q R + P P P P + + P V +A +E +E+
Sbjct: 1246 TGHMQHQPDRRRQPVSPPPPPRPISPPHTYGYISGPLVSDMDTDAPEE---------EED 1296
Query: 136 GAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAG-NGHGKDKEDGGGAQGYS 190
A + + ++L L Q + ++V G+ NG G E+ + G S
Sbjct: 1297 EADMEVAKMQTRRLLLRGLEQTPASSVGDLESSVTGSMINGWGSASEEDNISSGRS 1352
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 32.0 bits (71), Expect = 0.83
Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 25 GEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPPLPSHFALWVIQVG 84
G E + G + G SGPE M + L++ +P +Q
Sbjct: 833 GLESEVAGAQETEVGGSGISGPEAGMAEARVLMTRKTEIIVPEAEKEEAQTSG---VQEA 889
Query: 85 EART-------ALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEEGA 137
E R AL P++ PR G+ + GVQG++ + + G+ EG
Sbjct: 890 ETRVGSALKYEALRAPVT-QPRVLGSQEAKAEISGVQGSETQVLRVQEAEAGVWGMSEGK 948
Query: 138 GCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDKE 181
QE + LE+ K G +AQ A GN GK+ E
Sbjct: 949 SGAWGAQEAEMKVLESPENKSGT-FKAQEAEAGVLGNEKGKEAE 991
>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform 2
[Homo sapiens]
Length = 1562
Score = 31.6 bits (70), Expect = 1.1
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 93 PISPHPRGPGTSVQQLCTPGVQGAQIEADD-EAFR-QPGMGVQEEGAGCRQPQQEQQQLQ 150
P+ P P GP QQ TP +++E DD + F +P G G +Q Q + Q+
Sbjct: 1131 PVHPPPPGPREPAQQGPTP----SRVELDDSDVFHGEPEPEELPGGTGSQQRVQGKHQVL 1186
Query: 151 LEAHVQKEGAGEEAQ 165
LE ++EG+ EE +
Sbjct: 1187 LE-DPEQEGSAEEEE 1200
>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform 1
[Homo sapiens]
Length = 1522
Score = 31.6 bits (70), Expect = 1.1
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 93 PISPHPRGPGTSVQQLCTPGVQGAQIEADD-EAFR-QPGMGVQEEGAGCRQPQQEQQQLQ 150
P+ P P GP QQ TP +++E DD + F +P G G +Q Q + Q+
Sbjct: 1091 PVHPPPPGPREPAQQGPTP----SRVELDDSDVFHGEPEPEELPGGTGSQQRVQGKHQVL 1146
Query: 151 LEAHVQKEGAGEEAQ 165
LE ++EG+ EE +
Sbjct: 1147 LE-DPEQEGSAEEEE 1160
>gi|61742793 lymphocyte-specific protein 1 isoform 2 [Homo sapiens]
Length = 277
Score = 31.6 bits (70), Expect = 1.1
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 20 SQDKEGEEEDEEGD-STHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPP---LPSH 75
S+ E +E++ GD S QH G +GA+D G+P P CR P
Sbjct: 8 SEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEP----------PQCRSPEGEQEDR 57
Query: 76 FALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE 135
L + ++ L +S GPG G GA+ E QEE
Sbjct: 58 PGLHAYEKEDSDEVHLEELSLSKEGPGPEDTVQDNLGAAGAEEE-------------QEE 104
Query: 136 GAGCRQPQ 143
C+QP+
Sbjct: 105 HQKCQQPR 112
>gi|61742791 lymphocyte-specific protein 1 isoform 2 [Homo sapiens]
Length = 277
Score = 31.6 bits (70), Expect = 1.1
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 20 SQDKEGEEEDEEGD-STHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPP---LPSH 75
S+ E +E++ GD S QH G +GA+D G+P P CR P
Sbjct: 8 SEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEP----------PQCRSPEGEQEDR 57
Query: 76 FALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE 135
L + ++ L +S GPG G GA+ E QEE
Sbjct: 58 PGLHAYEKEDSDEVHLEELSLSKEGPGPEDTVQDNLGAAGAEEE-------------QEE 104
Query: 136 GAGCRQPQ 143
C+QP+
Sbjct: 105 HQKCQQPR 112
>gi|61742789 lymphocyte-specific protein 1 isoform 2 [Homo sapiens]
Length = 277
Score = 31.6 bits (70), Expect = 1.1
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 20 SQDKEGEEEDEEGD-STHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPP---LPSH 75
S+ E +E++ GD S QH G +GA+D G+P P CR P
Sbjct: 8 SEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEP----------PQCRSPEGEQEDR 57
Query: 76 FALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE 135
L + ++ L +S GPG G GA+ E QEE
Sbjct: 58 PGLHAYEKEDSDEVHLEELSLSKEGPGPEDTVQDNLGAAGAEEE-------------QEE 104
Query: 136 GAGCRQPQ 143
C+QP+
Sbjct: 105 HQKCQQPR 112
>gi|10880979 lymphocyte-specific protein 1 isoform 1 [Homo sapiens]
Length = 339
Score = 31.6 bits (70), Expect = 1.1
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 20 SQDKEGEEEDEEGD-STHQFGLLQHSGPEGAMDQGDPLLSPFLAFSLPPCRPP---LPSH 75
S+ E +E++ GD S QH G +GA+D G+P P CR P
Sbjct: 70 SEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEP----------PQCRSPEGEQEDR 119
Query: 76 FALWVIQVGEARTALLYPISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEE 135
L + ++ L +S GPG G GA+ E QEE
Sbjct: 120 PGLHAYEKEDSDEVHLEELSLSKEGPGPEDTVQDNLGAAGAEEE-------------QEE 166
Query: 136 GAGCRQPQ 143
C+QP+
Sbjct: 167 HQKCQQPR 174
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 31.6 bits (70), Expect = 1.1
Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 14/185 (7%)
Query: 154 HVQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSCGHQARQCRQPVQHLGAFQ 213
H K + GAG G G G G +S S +Q + P H +
Sbjct: 180 HFSKMKTSRHSSGGGGGGAGGGGGSMGGGGSGFISGRRSRSASPSTQQEKHPTHHERGQK 239
Query: 214 DTPLWREHGHLSHGAG------------APSSGQVVTRAPAYHFHPSAHLTIRSSEKQTK 261
+ +E H P++ +V + A + H ++ T +SE +
Sbjct: 240 KSRKDKERLKQKHKKRPESPPSILTPPVVPTADKVSSSASSSSHHEAS--TQETSESSRE 297
Query: 262 RMRRKRRKHLDDEVGEKNQEGAGFIVFEGGDCRESPTSFSISFSLKYSVSGLKSFDCFHC 321
+K H G+K G G F S +S S + +VS L+S F
Sbjct: 298 SKGKKSSSHSLSHKGKKLSSGKGVSSFTSASSSSSSSSSSSGGPFQPAVSSLQSSPDFSA 357
Query: 322 LVGVE 326
+E
Sbjct: 358 FPKLE 362
>gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens]
Length = 233
Score = 31.6 bits (70), Expect = 1.1
Identities = 56/215 (26%), Positives = 75/215 (34%), Gaps = 49/215 (22%)
Query: 21 QDKEGEEEDEEGDSTHQFGLLQHSGPEGAMDQGDPLLSPF-------LAFSLP--PCRPP 71
+++ GEE + E + F LLQ S G+ + D L++ A P PC PP
Sbjct: 8 EEEAGEEAEGEEEEDDSFLLLQQSVTLGSSGEVDRLVAQIGETLQLDAAQDSPASPCAPP 67
Query: 72 -----LPSHFALWVIQVGEAR----TALLYPISPHPRGPGTSVQQLCTPGVQG------- 115
P A + +AR LL P S GP S C G +G
Sbjct: 68 GVPLRAPGPLAA-AVPADKARPPAVPLLLPPASAETVGPAPSGALRCALGDRGRVRGRAA 126
Query: 116 ----AQIEADDEAFRQP-----------GMGVQEE-------GAGCRQPQQEQQQLQLEA 153
A++ A A P +Q+ AG P + QQL L
Sbjct: 127 PYCVAEVAAGPSALPGPCRRGWLRDAVTSRRLQQRRWTQAGARAGDDDPHRLLQQLVLSG 186
Query: 154 HVQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQG 188
++ KE A QRA A G GGG G
Sbjct: 187 NLIKE-AVRRLQRAVAAVAATGPASAPGPGGGRSG 220
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 31.2 bits (69), Expect = 1.4
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 136 GAGCRQPQQEQQQLQLEAHVQKEGAGEEAQRAAVHGAGNGHGKDKEDGGGAQGYSQSWSC 195
G+G Q QQ+QQQ Q + V + G RAA G G E G + + S
Sbjct: 2308 GSGPPQQQQQQQQQQQQQAVARPG------RAATSGPRRYPGPTAEPLAGDRPPTGGHSS 2361
Query: 196 GHQARQCRQPVQHLGAFQDTPLWREHGHLSHGAGAPSSGQVVTRAP 241
G R R+ A ++P HG GA P+SG V+ P
Sbjct: 2362 GRSPRMERRVPG--PARSESPRACRHG----GARWPASGPHVSEGP 2401
>gi|239757646 PREDICTED: similar to phosphatidylinositol 4-kinase
type 3 alpha [Homo sapiens]
Length = 286
Score = 31.2 bits (69), Expect = 1.4
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 93 PISPHPRGPGTSVQQLCTPGVQGAQIEADDEAFRQPGMGVQEEGAGCRQPQQEQQQLQ-- 150
P+S + G V Q ++G E R G GVQ+ RQPQ+E++Q Q
Sbjct: 196 PVSAQLQQRGQRVAQAAQRRLRGEAPEP-----RGDGAGVQQHRPEQRQPQEEERQRQQH 250
Query: 151 LEAHVQKEGAGEEAQRAAVHGAG 173
L+ AG +A R A AG
Sbjct: 251 LQRAQHAPPAGRKAGRWAATRAG 273
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,963,437
Number of Sequences: 37866
Number of extensions: 967081
Number of successful extensions: 5003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 4665
Number of HSP's gapped (non-prelim): 362
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.