Guide to the Human Genome
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Name: LOC100289021 Sequence: fasta or formatted (173aa) NCBI GI: 239744931
Description:

PREDICTED: hypothetical protein XP_002343311

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          7           2
 C cysteine            4.0          7           1
 D aspartate           4.6          8           2
 E glutamate           8.7         15           2
 F phenylalanine       4.6          8           1
 G glycine             6.9         12           2
 H histidine           2.9          5           1
 I isoleucine          3.5          6           2
 K lysine              8.1         14           1
 L leucine             8.1         14           2
 M methionine          3.5          6           1
 N asparagine          1.7          3           1
 P proline             2.3          4           1
 Q glutamine           5.2          9           2
 R arginine            9.2         16           2
 S serine             13.3         23           4
 T threonine           1.7          3           1
 V valine              5.2          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343311 
LOC100293282          0.475   PREDICTED: hypothetical protein 
LOC100289818          0.475   PREDICTED: hypothetical protein XP_002347476 
CDC2L2                0.037   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.037   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ZRANB2                0.021   zinc finger protein 265 isoform 1 
ZRANB2                0.021   zinc finger protein 265 isoform 2 
MYO9A                 0.021   myosin IXA 
C1orf63               0.021   hypothetical protein LOC57035 
NONO                  0.018   non-POU domain containing, octamer-binding isoform ...
NONO                  0.018   non-POU domain containing, octamer-binding isoform ...
NONO                  0.018   non-POU domain containing, octamer-binding isoform ...
NONO                  0.018   non-POU domain containing, octamer-binding isoform 1...
C11orf57              0.018   hypothetical protein LOC55216 isoform b 
C11orf57              0.018   hypothetical protein LOC55216 isoform a 
C11orf57              0.018   hypothetical protein LOC55216 isoform a 
RUFY4                 0.018   RUN and FYVE domain containing 4 
SNRNP70               0.018   U1 small nuclear ribonucleoprotein 70 kDa 
SON                   0.018   SON DNA-binding protein isoform F 
SON                   0.018   SON DNA-binding protein isoform B 
DBN1                  0.015   drebrin 1 isoform b 
DBN1                  0.015   drebrin 1 isoform a 
FBXL8                 0.015   F-box and leucine-rich repeat protein 8 
SPTAN1                0.015   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.015   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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