Guide to the Human Genome
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Name: LOC100291317 Sequence: fasta or formatted (262aa) NCBI GI: 239748594
Description:

PREDICTED: hypothetical protein XP_002346735

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         19           2
 C cysteine            0.8          2           1
 D aspartate           3.4          9           2
 E glutamate           6.5         17           2
 F phenylalanine       4.2         11           2
 G glycine            10.3         27           3
 H histidine           1.9          5           1
 I isoleucine          3.8         10           1
 K lysine              6.5         17           2
 L leucine             8.4         22           2
 M methionine          3.1          8           1
 N asparagine          5.0         13           1
 P proline             8.0         21           2
 Q glutamine           3.8         10           1
 R arginine            6.9         18           2
 S serine              6.1         16           2
 T threonine           4.2         11           3
 V valine              6.5         17           1
 W tryptophan          1.1          3           1
 Y tyrosine            2.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346735 
DHFR                  0.701   dihydrofolate reductase 
DHFRL1                0.626   dihydrofolate reductase-like 1 
FGF2                  0.027   fibroblast growth factor 2 
LOC100127891          0.016   PREDICTED: hypothetical protein 
LOC100292057          0.014   PREDICTED: hypothetical protein XP_002345830 
KIAA1530              0.014   hypothetical protein LOC57654 
LOC729240             0.014   PREDICTED: FLJ40296 protein family member 
MAGI2                 0.014   membrane associated guanylate kinase, WW and PDZ dom...
PRR20                 0.014   proline rich 20 
UBE2Z                 0.014   ubiquitin-conjugating enzyme E2Z 
LOC729250             0.014   hypothetical protein LOC729250 
LOC729246             0.014   hypothetical protein LOC729246 
LOC729240             0.014   hypothetical protein LOC729240 
LOC729233             0.014   hypothetical protein LOC729233 
DACH1                 0.012   dachshund homolog 1 isoform b 
DACH1                 0.012   dachshund homolog 1 isoform a 
DACH1                 0.012   dachshund homolog 1 isoform c 
LOC100131271          0.012   PREDICTED: hypothetical protein 
LOC100129954          0.012   PREDICTED: hypothetical protein 
LOC100128142          0.012   PREDICTED: hypothetical protein 
LOC100131271          0.012   PREDICTED: hypothetical protein 
LOC100129954          0.012   PREDICTED: hypothetical protein 
LOC100128142          0.012   PREDICTED: similar to RIKEN cDNA E130309D14 
LOC100289044          0.012   PREDICTED: hypothetical protein XP_002343344 
LOC100129954          0.012   PREDICTED: hypothetical protein 
LOC100293812          0.012   PREDICTED: hypothetical protein 
LOC100289716          0.012   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.012   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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