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Search of human proteins with 239750562
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens] 555 e-158
gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens] 555 e-158
gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens] 555 e-158
gi|23110944 proteasome alpha 6 subunit [Homo sapiens] 226 2e-59
gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens] 60 2e-09
gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens] 60 2e-09
gi|4506189 proteasome alpha 7 subunit [Homo sapiens] 54 1e-07
gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens] 49 6e-06
gi|4506181 proteasome subunit alpha type 2 [Homo sapiens] 48 8e-06
gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens] 48 8e-06
gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens] 48 8e-06
gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens] 48 1e-05
gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens] 47 2e-05
gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens] 47 2e-05
gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens] 45 9e-05
gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens] 43 3e-04
gi|23110942 proteasome alpha 5 subunit [Homo sapiens] 42 6e-04
gi|48928029 trafficking protein particle complex 10 [Homo sapiens] 28 6.5
gi|7661910 tetratricopeptide repeat domain 35 [Homo sapiens] 28 6.5
gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens] 28 8.5
gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo... 28 8.5
>gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens]
Length = 272
Score = 555 bits (1429), Expect = e-158
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA 60
MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA
Sbjct: 1 MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA 60
Query: 61 HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG 120
HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG
Sbjct: 61 HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG 120
Query: 121 LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA 180
LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA
Sbjct: 121 LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA 180
Query: 181 ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN 240
ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN
Sbjct: 181 ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN 240
Query: 241 YMPFYCAINDLKSSETEIRVVTVEIPEFRILT 272
YMPFYCAINDLKSSETEIRVVTVEIPEFRILT
Sbjct: 241 YMPFYCAINDLKSSETEIRVVTVEIPEFRILT 272
>gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]
Length = 272
Score = 555 bits (1429), Expect = e-158
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA 60
MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA
Sbjct: 1 MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA 60
Query: 61 HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG 120
HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG
Sbjct: 61 HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG 120
Query: 121 LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA 180
LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA
Sbjct: 121 LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA 180
Query: 181 ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN 240
ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN
Sbjct: 181 ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN 240
Query: 241 YMPFYCAINDLKSSETEIRVVTVEIPEFRILT 272
YMPFYCAINDLKSSETEIRVVTVEIPEFRILT
Sbjct: 241 YMPFYCAINDLKSSETEIRVVTVEIPEFRILT 272
>gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens]
Length = 272
Score = 555 bits (1429), Expect = e-158
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA 60
MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA
Sbjct: 1 MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA 60
Query: 61 HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG 120
HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG
Sbjct: 61 HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG 120
Query: 121 LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA 180
LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA
Sbjct: 121 LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA 180
Query: 181 ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN 240
ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN
Sbjct: 181 ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN 240
Query: 241 YMPFYCAINDLKSSETEIRVVTVEIPEFRILT 272
YMPFYCAINDLKSSETEIRVVTVEIPEFRILT
Sbjct: 241 YMPFYCAINDLKSSETEIRVVTVEIPEFRILT 272
>gi|23110944 proteasome alpha 6 subunit [Homo sapiens]
Length = 246
Score = 226 bits (576), Expect = 2e-59
Identities = 132/226 (58%), Positives = 149/226 (65%), Gaps = 43/226 (19%)
Query: 90 STGFDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSR- 148
S GFDRH+ IFSP+ +LYQV+YAFKAINQGGLTSVAVR KDCAVIVT K VPDKLLDS
Sbjct: 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST 65
Query: 149 -THLFKMTKNTGRVITGVTADSRSREQRAQYKAANCKY---------------------- 185
THLFK+T+N G V+TG+TADSRS+ QRA+Y+AAN KY
Sbjct: 66 VTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVY 125
Query: 186 ----------------NIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLE--VKK 227
I EE GP+VYKCD AGYYCGFKATAAGVKQ ESTSFLE VKK
Sbjct: 126 TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKK 185
Query: 228 KFAWTFEHSGNRNYMPFYCAIN-DLKSSETEIRVVTVEIPEFRILT 272
KF WTFE + ++ D K SE E+ VVTVE P+FRILT
Sbjct: 186 KFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILT 231
>gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens]
Length = 248
Score = 60.1 bits (144), Expect = 2e-09
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 91 TGFDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLD--SR 148
TG+D FSP +++QV+YA KA+ + T++ +R KD V K+V KL + S
Sbjct: 6 TGYDLSASTFSPDGRVFQVEYAMKAV-ENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN 64
Query: 149 THLFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYN 186
LF + ++ G + G+ AD+RS A+ +A+N + N
Sbjct: 65 KRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSN 102
>gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens]
Length = 255
Score = 60.1 bits (144), Expect = 2e-09
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 91 TGFDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLD--SR 148
TG+D FSP +++QV+YA KA+ + T++ +R KD V K+V KL + S
Sbjct: 6 TGYDLSASTFSPDGRVFQVEYAMKAV-ENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN 64
Query: 149 THLFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYN 186
LF + ++ G + G+ AD+RS A+ +A+N + N
Sbjct: 65 KRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSN 102
>gi|4506189 proteasome alpha 7 subunit [Homo sapiens]
Length = 248
Score = 54.3 bits (129), Expect = 1e-07
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 41/172 (23%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150
+DR + +FSP L+QV+YA +A+ +G T+V VR +D V+ K KL D RT
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
Query: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKA--------------------ANCKYNIFEE 190
+ + N G+TAD+R RA+ + A+ K +
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 191 LG------------------PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
G PR+Y+ D +G Y +KA A G FLE
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173
>gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]
Length = 250
Score = 48.5 bits (114), Expect = 6e-06
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 41/172 (23%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150
+DR + +FSP L+QV+YA +A+ +G T+V +R + V+ K KL D RT
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
Query: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYNI----------------------- 187
+ + + G+TAD+R RA+ + + K +
Sbjct: 64 ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
Query: 188 --------------FEELG-PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
F++ G R+Y+ D +G Y +KA A G FLE
Sbjct: 124 NGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLE 175
>gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]
Length = 234
Score = 48.1 bits (113), Expect = 8e-06
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 42/173 (24%)
Query: 92 GFDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT-- 149
G+ L FSP +L Q++YA A+ GG SV ++ + V+ T K L D R+
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 150 HLFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYNIFEEL------------------ 191
+ +TK+ G V +G+ D R RA+ K A Y +++E
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRAR-KLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 192 --------------------GPRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
P +++ D +G Y +KATA G +FLE
Sbjct: 123 QSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLE 175
>gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]
Length = 263
Score = 48.1 bits (113), Expect = 8e-06
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 38/169 (22%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLF 152
+D + ++SP+ +++Q++YA +A+ QG T V ++ K AV+V K +L + +
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQKKIL 64
Query: 153 KMTKNTGRVITGVTADSR-------------------------------SREQRAQYKAA 181
+ + G I G+TAD+R S+ Q +
Sbjct: 65 HVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYG 124
Query: 182 NCKYNI------FEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
Y + ++++GP +++ + Y +A + G + + ++LE
Sbjct: 125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 173
>gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]
Length = 269
Score = 48.1 bits (113), Expect = 8e-06
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 38/169 (22%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLF 152
+D + ++SP+ +++Q++YA +A+ QG T V ++ K AV+V K +L + +
Sbjct: 12 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQKKIL 70
Query: 153 KMTKNTGRVITGVTADSR-------------------------------SREQRAQYKAA 181
+ + G I G+TAD+R S+ Q +
Sbjct: 71 HVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYG 130
Query: 182 NCKYNI------FEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
Y + ++++GP +++ + Y +A + G + + ++LE
Sbjct: 131 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 179
>gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens]
Length = 130
Score = 47.8 bits (112), Expect = 1e-05
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLF 152
+D + ++SP+ +++Q++YA +A+ QG T V ++ K AV+V K +L + +
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQKKIL 64
Query: 153 KMTKNTGRVITGVTADSR 170
+ + G I G+TAD+R
Sbjct: 65 HVDNHIGISIAGLTADAR 82
>gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
Length = 261
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 90 STGFDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDS-- 147
S +D IFSP+ +LYQV+YA +AI G T + + D ++ + KLLD
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 148 -RTHLFKMTKNTGRVITGVTADSR---------SREQRAQYK---------AANC----K 184
++K+ ++ + G+T+D+ ++ QY+ A C
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 185 YNIF----------------EELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
Y F + G ++Y+ D +G Y G+KAT G A + S L+
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 176
>gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
Length = 261
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 90 STGFDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDS-- 147
S +D IFSP+ +LYQV+YA +AI G T + + D ++ + KLLD
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 148 -RTHLFKMTKNTGRVITGVTADSR---------SREQRAQYK---------AANC----K 184
++K+ ++ + G+T+D+ ++ QY+ A C
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 185 YNIF----------------EELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
Y F + G ++Y+ D +G Y G+KAT G A + S L+
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 176
>gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]
Length = 256
Score = 44.7 bits (104), Expect = 9e-05
Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 49/179 (27%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--- 149
+DR + +FSP L+QV+YA +A+ +G T+V +R + V+ K KL D RT
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
Query: 150 ------HLFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYNI---------------- 187
H+ M + G+TAD+R RA+ + + K +
Sbjct: 64 ICALDDHVC-MAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATL 122
Query: 188 ---------------------FEELG-PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
F++ G R+Y+ D +G Y +KA A G FLE
Sbjct: 123 KQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLE 181
>gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]
Length = 212
Score = 43.1 bits (100), Expect = 3e-04
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVR--KKDCAVIVTHKIVPDKLLDSRTH 150
+DR + +FSP L+QV+YA +A+ +G T+V +R D V++ V + ++H
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGLTADARVVINRARV-----ECQSH 58
Query: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYNI------FEELG-PRVYKCDAAGY 203
K+T + +T + +Q+ + I F++ G R+Y+ D +G
Sbjct: 59 --KLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGT 116
Query: 204 YCGFKATAAGVKQAESTSFLE 224
Y +KA A G FLE
Sbjct: 117 YHAWKANAIGRSAKTVREFLE 137
>gi|23110942 proteasome alpha 5 subunit [Homo sapiens]
Length = 241
Score = 42.0 bits (97), Expect = 6e-04
Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 93 FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLD--SRTH 150
+DR + FSP+ +L+QV+YA +AI G T++ ++ + + K + L++ S
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKAAN 182
+ ++ + G ++G+ AD+++ +A+ + N
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQN 98
>gi|48928029 trafficking protein particle complex 10 [Homo sapiens]
Length = 1259
Score = 28.5 bits (62), Expect = 6.5
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 7 FTHTNSIRCVIFSNDRLLSKYTQQNWSAL--KLRGQWLSLFAIRSVNSFVEPLKAAHGHS 64
F + S RCV+ S+ S TQ++W+A KLR L F +++ F + ++
Sbjct: 154 FCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFT-KNLGKFEDDMRTLREKR 212
Query: 65 LGPG 68
PG
Sbjct: 213 TEPG 216
>gi|7661910 tetratricopeptide repeat domain 35 [Homo sapiens]
Length = 297
Score = 28.5 bits (62), Expect = 6.5
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 38 RGQWLSLFAIRSVNSFVEPLKAAHGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFD-RH 96
+ Q ++ AIR +N ++E VG +++W + + F
Sbjct: 132 KAQGKNVEAIRELNEYLEQF-----------VGDQEAWHELAELYINEHDYAKAAFCLEE 180
Query: 97 LIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKK 129
L++ +P LY QYA QGGL ++ + +K
Sbjct: 181 LMMTNPHNHLYCQQYAEVKYTQGGLENLELSRK 213
>gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 192 GPRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224
G ++Y+ D +G Y G+KAT G A + S L+
Sbjct: 73 GFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 105
>gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo
sapiens]
Length = 234
Score = 28.1 bits (61), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 233 FEHSGNRNYMPFYCAINDLKSSETEIRVVTVEIPE 267
++ GNR +P YC + E + + T++IPE
Sbjct: 109 YDELGNRYQLPVYCLAPPINMIEEKSDIETLDIPE 143
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,641,297
Number of Sequences: 37866
Number of extensions: 378441
Number of successful extensions: 722
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 30
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.