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Search of human proteins with 239750464
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750464 PREDICTED: hypothetical protein XP_002347367 [Homo
sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750464 PREDICTED: hypothetical protein XP_002347367 [Homo ... 244 1e-65
gi|112421108 capicua homolog [Homo sapiens] 34 0.028
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 33 0.037
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|113412136 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|113408483 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.048
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.048
gi|153792074 proline rich 12 [Homo sapiens] 33 0.048
gi|31543095 hypothetical protein LOC90050 [Homo sapiens] 33 0.063
gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens] 33 0.063
gi|28557723 hypothetical protein LOC283416 [Homo sapiens] 33 0.063
gi|4885241 v-fos FBJ murine osteosarcoma viral oncogene homolog ... 32 0.082
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 32 0.082
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 32 0.082
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 32 0.082
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 32 0.082
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo... 32 0.11
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo... 32 0.11
gi|38348332 killer cell lectin-like receptor subfamily G, member... 32 0.11
gi|239757419 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo ... 31 0.18
gi|239751936 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo ... 31 0.18
gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo ... 31 0.18
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 31 0.18
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 30 0.31
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
>gi|239750464 PREDICTED: hypothetical protein XP_002347367 [Homo
sapiens]
Length = 118
Score = 244 bits (623), Expect = 1e-65
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MEPPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVK 60
MEPPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVK
Sbjct: 1 MEPPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVK 60
Query: 61 REINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAPGEAGSPT 118
REINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAPGEAGSPT
Sbjct: 61 REINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAPGEAGSPT 118
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 33.9 bits (76), Expect = 0.028
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 3 PPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPK---SSVRQEV 59
PPSPAP P PGG S S R P++ G ++++ P K SV V
Sbjct: 1292 PPSPAPA--PAVAPGGSSESSSGRAAGDTPERKEAAGTGKKVKVRPPPLKKTFDSVDNRV 1349
Query: 60 KREINF 65
E++F
Sbjct: 1350 LSEVDF 1355
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 33.5 bits (75), Expect = 0.037
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 9 LRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKREINFHSA 68
L+L P G + RP+Q QR++ R P P + R + E+
Sbjct: 35 LQLQVPLSGAEGKELLAAQAAHRPRQQ----QRQQQRPRPRSPDPAARGQHVPELRSRKP 90
Query: 69 APACRRRE-IKVTGQGLWGGNDLPPRSNDSSG--GEEAVSAREAAPGEAGSP 117
PA R E VTG+ W LPP + G G E R A P AG+P
Sbjct: 91 GPAARTEEGGDVTGRP-WQPPLLPPPGVPTPGNRGGERRGERRAPPRPAGAP 141
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 33.1 bits (74), Expect = 0.048
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 4 PSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKREI 63
P PAPL RPRP G AP + Q VG R R R P+ + + K +
Sbjct: 181 PLPAPLLASRPRPRGRCAPDGA--------QAGVGASRLRRRRAPSGTLNGPYAQDKHGL 232
Query: 64 NFHSAAPACRRREIKVTGQGLWGGNDLPPRS 94
N A E++ G L P++
Sbjct: 233 NQVHAPAGDALTEVRTAVPGQVKPRTLGPKN 263
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 33.1 bits (74), Expect = 0.048
Identities = 38/126 (30%), Positives = 44/126 (34%), Gaps = 23/126 (18%)
Query: 5 SPAPLRLPRPRPG--------GLSAPSCSRG---HQQRPKQVAVGGQRRRLRATPTRPKS 53
SP P PR PG G S C+R H P VG +R R K
Sbjct: 145 SPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDR--------KF 196
Query: 54 SVRQEVKREINFHSAAPACRRREI--KVTGQGLWGGNDLPPRSNDSSGGEEAVSA--REA 109
+ Q R F + R + V Q W P RS +GGE A R
Sbjct: 197 QLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR 256
Query: 110 APGEAG 115
APG AG
Sbjct: 257 APGRAG 262
>gi|113412136 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 33.1 bits (74), Expect = 0.048
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 4 PSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKREI 63
P PAPL RPRP G AP + Q VG R R R P+ + + K +
Sbjct: 48 PLPAPLLASRPRPRGRCAPDGA--------QAGVGASRLRRRRAPSGTLNGPYAQDKHGL 99
Query: 64 NFHSAAPACRRREIKVTGQGLWGGNDLPPRS 94
N A E++ G L P++
Sbjct: 100 NQVHAPAGDALTEVRTAVPGQVKPRTLGPKN 130
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 33.1 bits (74), Expect = 0.048
Identities = 38/126 (30%), Positives = 44/126 (34%), Gaps = 23/126 (18%)
Query: 5 SPAPLRLPRPRPG--------GLSAPSCSRG---HQQRPKQVAVGGQRRRLRATPTRPKS 53
SP P PR PG G S C+R H P VG +R R K
Sbjct: 145 SPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDR--------KF 196
Query: 54 SVRQEVKREINFHSAAPACRRREI--KVTGQGLWGGNDLPPRSNDSSGGEEAVSA--REA 109
+ Q R F + R + V Q W P RS +GGE A R
Sbjct: 197 QLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR 256
Query: 110 APGEAG 115
APG AG
Sbjct: 257 APGRAG 262
>gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 33.1 bits (74), Expect = 0.048
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 4 PSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKREI 63
P PAPL RPRP G AP + Q VG R R R P+ + + K +
Sbjct: 48 PLPAPLLASRPRPRGRCAPDGA--------QAGVGASRLRRRRAPSGTLNGPYAQDKHGL 99
Query: 64 NFHSAAPACRRREIKVTGQGLWGGNDLPPRS 94
N A E++ G L P++
Sbjct: 100 NQVHAPAGDALTEVRTAVPGQVKPRTLGPKN 130
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 33.1 bits (74), Expect = 0.048
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 29/122 (23%)
Query: 3 PP--SPAPLRLPRP-----RPGGLSAPSCS-RGHQQRPKQVAVGGQRRRLRATPTRPKSS 54
PP SP P RLP P +P +AP +G Q RP GG A P S
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP---VAGGPGAPPAARPPASPSP 554
Query: 55 VRQEVKREINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDS-SGGEEAVSAREAAPGE 113
RQ A P R+ V+G PP+++ + GG++ + PG
Sbjct: 555 QRQ----------AGPPQATRQTSVSGPA-------PPKASGAPPGGQQRQGPPQKPPGP 597
Query: 114 AG 115
AG
Sbjct: 598 AG 599
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.048
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 29/122 (23%)
Query: 3 PP--SPAPLRLPRP-----RPGGLSAPSCS-RGHQQRPKQVAVGGQRRRLRATPTRPKSS 54
PP SP P RLP P +P +AP +G Q RP GG A P S
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP---VAGGPGAPPAARPPASPSP 554
Query: 55 VRQEVKREINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDS-SGGEEAVSAREAAPGE 113
RQ A P R+ V+G PP+++ + GG++ + PG
Sbjct: 555 QRQ----------AGPPQATRQTSVSGPA-------PPKASGAPPGGQQRQGPPQKPPGP 597
Query: 114 AG 115
AG
Sbjct: 598 AG 599
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.1 bits (74), Expect = 0.048
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 2 EPPSPAPLRLPRPRPGGLSAPSCSRGHQQ-RPKQVAVGGQRRRLRATPTRPKSSVRQEVK 60
EPP+P L RP +RG + R ++ G Q R R+ T ++ R
Sbjct: 1725 EPPAPEKPSLLRPVEKEKEKEKVTRGERPLRGERATSGRQTRPERSLATGQPATSRLPKA 1784
Query: 61 REINFHSAAPACRRRE-IKVTGQGLWGGNDLPPRSNDSSGGEEAVSARE-AAPG 112
R + P +R++ +K G G P S+DS A S E A PG
Sbjct: 1785 RPTKVKAEPPPKKRKKWLKEAGGNATAGGGPPGSSSDSESSPGAPSEDERAVPG 1838
>gi|31543095 hypothetical protein LOC90050 [Homo sapiens]
Length = 354
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 10 RLPRPRPGGLSAPSCSRGHQQRPKQVAV-----------GGQRRRLRATPTRPKSSVRQE 58
RLPR PG + P RG + RP+++ + GG + ++ +P R + +++
Sbjct: 116 RLPRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQ 175
Query: 59 VKREINFHSAAPA---CRRREIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAPGE 113
+ + + +A P R+R++ + W + P + G E + RE P E
Sbjct: 176 LPQRQHPEAAQPGQVPMRKRQLPAS---FW--EEPRPTHSYHVGLEGGLGPREGPPYE 228
>gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]
Length = 478
Score = 32.7 bits (73), Expect = 0.063
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 2 EPPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTR 50
EPP+P P P P AP Q P + + GQR+R R T R
Sbjct: 80 EPPAPPPPEPPTGLPARTPAPQGLLSPTQVPTGLGLDGQRQRKRVTSQR 128
>gi|28557723 hypothetical protein LOC283416 [Homo sapiens]
Length = 131
Score = 32.7 bits (73), Expect = 0.063
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 4 PSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQ 57
P P P R P G LSAP + GH P + A G +++ R + P+ V Q
Sbjct: 60 PGPHPRRAVEPAAGPLSAPIIAGGH---PAEAAAGSAKQQPRHSREVPRPPVPQ 110
>gi|4885241 v-fos FBJ murine osteosarcoma viral oncogene homolog
[Homo sapiens]
Length = 380
Score = 32.3 bits (72), Expect = 0.082
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 5 SPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQR----RRLRATPTRPKSSVRQEVK 60
S AP + P P G+ APS + + GG+ RR + P+ ++ ++
Sbjct: 84 SVAPSQTRAPHPFGVPAPSAGAYSRAGVVKTMTGGRAQSIGRRGKVEQLSPEEEEKRRIR 143
Query: 61 REINFHSAAPACRRREIKVT 80
RE N AA CR R ++T
Sbjct: 144 RERN-KMAAAKCRNRRRELT 162
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 32.3 bits (72), Expect = 0.082
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 2 EPPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKR 61
+PP P P P+PG + P+ R P + + RLR+ RP +
Sbjct: 197 QPPLPQETAAPAPQPGPTAPPARVR----EPGRAEGASREPRLRSRAARPPPAPGP---- 248
Query: 62 EINFHSAAPACRRREIKVTGQGLWGGND-LPPRSNDSSGGEEAVSAREAAP 111
+ + A R R G G GG PR+ GG + AAP
Sbjct: 249 ----GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAP 295
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 32.3 bits (72), Expect = 0.082
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 6 PAPLRLPRPRPGGLSAPSCSRGHQQR---------------PKQVAVGGQRRRLRATPTR 50
P PL P R G SC++ H++R P A G R RA
Sbjct: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVS 116
Query: 51 PKSSVRQEVKREINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDSSG 99
P + R + + + AP R R+ + + GG PP +SG
Sbjct: 117 PPTPPRSGLDPAVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLRRAASG 165
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 32.3 bits (72), Expect = 0.082
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 6 PAPLRLPRPRPGGLSAPSCSRGHQQR---------------PKQVAVGGQRRRLRATPTR 50
P PL P R G SC++ H++R P A G R RA
Sbjct: 57 PGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVS 116
Query: 51 PKSSVRQEVKREINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDSSG 99
P + R + + + AP R R+ + + GG PP +SG
Sbjct: 117 PPTPPRSGLDPAVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLRRAASG 165
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 2 EPPSPAPLRLP------RPRPGGLSAPSCSRGHQQRPKQVAV--GGQRRRLRATPTRPKS 53
EPP P+PL L RP+P A G RP ++ G + +RLR T K
Sbjct: 4943 EPPVPSPLPLASSPESARPKP---RARPPEEGEDSRPPRLKKWKGVRWKRLRLLLTIQKG 4999
Query: 54 SVRQEVKREI 63
S RQE +RE+
Sbjct: 5000 SGRQEDEREV 5009
>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform b
[Homo sapiens]
Length = 1524
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 9 LRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKREINFHSA 68
+RLP G LS+ SRG QQ P R R+ + PK++V + R + ++
Sbjct: 1236 VRLPVKTRGKLSSSFSSRGQQQEP-------GRYPSRSQQSTPKTTVSSKTGRSLRKINS 1288
Query: 69 APACRRREIKVTGQ 82
AP + +++ +
Sbjct: 1289 APPTETKSLRIASR 1302
>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform a
[Homo sapiens]
Length = 1556
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 9 LRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKREINFHSA 68
+RLP G LS+ SRG QQ P R R+ + PK++V + R + ++
Sbjct: 1268 VRLPVKTRGKLSSSFSSRGQQQEP-------GRYPSRSQQSTPKTTVSSKTGRSLRKINS 1320
Query: 69 APACRRREIKVTGQ 82
AP + +++ +
Sbjct: 1321 APPTETKSLRIASR 1334
>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
[Homo sapiens]
Length = 409
Score = 32.0 bits (71), Expect = 0.11
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 14/126 (11%)
Query: 2 EPPSPAPLRLPRPR----PGGLSAPSCSRGHQ----QRPKQVAVGGQRRRLRATPT-RPK 52
EPPSP P + PR PG APS + R K V G +TP+ RP
Sbjct: 92 EPPSPGPALVKLPRNGEAPGAEPAPSAWAPMELQVDVRVKPVGAAGG----SSTPSPRPS 147
Query: 53 SS-VRQEVKREINFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAP 111
+ ++ V F A + ++ QG G P + + G +A A
Sbjct: 148 TRFLKVPVPESPAFSRHADPAHQLLLRAPSQGGTWGRRSPLAAARTESGCDAEGRASPAE 207
Query: 112 GEAGSP 117
G AGSP
Sbjct: 208 GSAGSP 213
>gi|239757419 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1 MEPPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRAT 47
+ PP+PA L + P+P SA S R + R K + GG R R+ A+
Sbjct: 64 LRPPAPASLHVGGPKPAAKSAKSFPRRLRDR-KCLGPGGGRTRVAAS 109
>gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo
sapiens]
Length = 209
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 3 PPSPAPLRLPR-PRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRA 46
PP P R P P PGGL+AP S Q P + A RRLR+
Sbjct: 163 PPRRGPPRPPGLPYPGGLAAPRAS--PPQHPNRAAPPASARRLRS 205
>gi|239751936 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1 MEPPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRAT 47
+ PP+PA L + P+P SA S R + R K + GG R R+ A+
Sbjct: 97 LRPPAPASLHVGGPKPAAKSAKSFPRRLRDR-KCLGPGGGRTRVAAS 142
>gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo
sapiens]
Length = 209
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 3 PPSPAPLRLPR-PRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRA 46
PP P R P P PGGL+AP S Q P + A RRLR+
Sbjct: 163 PPRRGPPRPPGLPYPGGLAAPRAS--PPQHPNRAAPPASARRLRS 205
>gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo
sapiens]
Length = 209
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 3 PPSPAPLRLPR-PRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRA 46
PP P R P P PGGL+AP S Q P + A RRLR+
Sbjct: 163 PPRRGPPRPPGLPYPGGLAAPRAS--PPQHPNRAAPPASARRLRS 205
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 31.2 bits (69), Expect = 0.18
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 17 GGLSAPSCSRGHQQRPKQVAVG-GQRRRLRATPTRPKSSVRQEVKREINFHSAAPACRRR 75
GG S+ S S + P+Q G G R L P + ++ S + R
Sbjct: 532 GGSSSSSSSSSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPARQ-----STSQPWRG- 585
Query: 76 EIKVTGQGLWGGNDL----PPR-SNDSSGGEEAVSAREAAPGEAGSP 117
G G W G PP+ S+ S GG + S AAPGE SP
Sbjct: 586 -----GAGAWLGGPAASLSPPKGSSASQGGSKEASTTAAAPGEETSP 627
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/114 (23%), Positives = 40/114 (35%)
Query: 4 PSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKREI 63
P+P P L P G + + G ++ + +RL P + V E +
Sbjct: 941 PAPGPTVLNVPLSGPGAPAAAKPGTSGSWQEAGTSAKDKRLSTMQALPLAPVFSEAEGTA 1000
Query: 64 NFHSAAPACRRREIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAPGEAGSP 117
S APA +I V+ G P ++ G EA AAP P
Sbjct: 1001 PAASQAPALGPGQISVSCPESGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLP 1054
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 4 PSPAPLRLPRPRPG----GLSAPSCSRGHQQRPKQVAVG---GQRRRLRATPT 49
P P+P R P P PG G ++P S GH P + A+G G R L + T
Sbjct: 140 PEPSPARTPAPSPGPGSCGSASPRSSPGH--APARAALGTASGHRAGLTSRDT 190
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 30.4 bits (67), Expect = 0.31
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 27/117 (23%)
Query: 3 PPSPAPLRLPRPRPGGLSAPSCSRGHQQRPKQVAVGGQRRRLRATPTRPKSSVRQEVKRE 62
PP P P R PRP P ++ P A G P +P ++R V++
Sbjct: 437 PPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAWPG--------PAQPLGNLRPPVQQ- 487
Query: 63 INFHSAAPACRR--REIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAPGEAGSP 117
+AP R+ +E + TG S ++ G +E EA GE G+P
Sbjct: 488 -----SAPGGRKCVKEGEATGP-----------SKETRGPKECRQVGEAVLGEGGAP 528
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,470,738
Number of Sequences: 37866
Number of extensions: 357561
Number of successful extensions: 2105
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 307
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.