Guide to the Human Genome
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Search of human proteins with 239750363

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750363 PREDICTED: hypothetical protein XP_002347382 [Homo
sapiens]
         (250 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755855 PREDICTED: hypothetical protein [Homo sapiens]           505   e-143
gi|239750363 PREDICTED: hypothetical protein XP_002347382 [Homo ...   505   e-143
gi|239744667 PREDICTED: hypothetical protein XP_002343220 [Homo ...   505   e-143
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ...    37   0.012
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ...    37   0.012
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]           37   0.016
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]           37   0.016
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]           37   0.016
gi|11321642 bromodomain containing protein 1 [Homo sapiens]            37   0.021
gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]          36   0.028
gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]          36   0.028
gi|47777330 hypothetical protein LOC115939 [Homo sapiens]              35   0.047
gi|21396500 HIRA interacting protein 3 [Homo sapiens]                  35   0.080
gi|51317366 myosin XVIIIB [Homo sapiens]                               35   0.080
gi|27894378 chloride intracellular channel 6 [Homo sapiens]            35   0.080
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            34   0.10 
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            34   0.10 
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            34   0.10 
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              33   0.18 
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]       33   0.18 
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa...    33   0.18 
gi|4757962 cyclin-dependent kinase inhibitor 1B [Homo sapiens]         33   0.23 
gi|150170699 kinesin family member 26A [Homo sapiens]                  33   0.23 
gi|8923009 non-SMC element 4 homolog A [Homo sapiens]                  33   0.23 
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi...    33   0.30 
gi|209862785 anoctamin 2 [Homo sapiens]                                32   0.40 
gi|109637763 calpastatin isoform h [Homo sapiens]                      32   0.40 
gi|109637757 calpastatin isoform e [Homo sapiens]                      32   0.40 
gi|40354197 THAP domain containing 11 [Homo sapiens]                   32   0.40 
gi|41393610 Ras association (RalGDS/AF-6) domain family 6 isofor...    32   0.40 

>gi|239755855 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 250

 Score =  505 bits (1300), Expect = e-143
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
           MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD
Sbjct: 1   MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60

Query: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
           GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE
Sbjct: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120

Query: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
           ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA
Sbjct: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180

Query: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
           KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW
Sbjct: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240

Query: 241 LTQPLPPWFK 250
           LTQPLPPWFK
Sbjct: 241 LTQPLPPWFK 250


>gi|239750363 PREDICTED: hypothetical protein XP_002347382 [Homo
           sapiens]
          Length = 250

 Score =  505 bits (1300), Expect = e-143
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
           MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD
Sbjct: 1   MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60

Query: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
           GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE
Sbjct: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120

Query: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
           ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA
Sbjct: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180

Query: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
           KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW
Sbjct: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240

Query: 241 LTQPLPPWFK 250
           LTQPLPPWFK
Sbjct: 241 LTQPLPPWFK 250


>gi|239744667 PREDICTED: hypothetical protein XP_002343220 [Homo
           sapiens]
          Length = 250

 Score =  505 bits (1300), Expect = e-143
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
           MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD
Sbjct: 1   MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60

Query: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
           GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE
Sbjct: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120

Query: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
           ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA
Sbjct: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180

Query: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
           KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW
Sbjct: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240

Query: 241 LTQPLPPWFK 250
           LTQPLPPWFK
Sbjct: 241 LTQPLPPWFK 250


>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
           sapiens]
          Length = 177

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 4   LPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPR---LRGAAERPRRSRDTWD 60
           LP+GG R  LR     R  G  + LE      +P A  +PR    R A  RP      W 
Sbjct: 40  LPSGGLR--LRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWR 97

Query: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
           G  +  PG   G   +R   L +   +   +   E E     R  +G R  R       E
Sbjct: 98  GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRPDARGRAE 157

Query: 121 ASGSDVVLGG 130
           A  SD V  G
Sbjct: 158 AVCSDHVGAG 167


>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
           sapiens]
          Length = 177

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 4   LPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPR---LRGAAERPRRSRDTWD 60
           LP+GG R  LR     R  G  + LE      +P A  +PR    R A  RP      W 
Sbjct: 40  LPSGGLR--LRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWR 97

Query: 61  GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
           G  +  PG   G   +R   L +   +   +   E E     R  +G R  R       E
Sbjct: 98  GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRPDARGRAE 157

Query: 121 ASGSDVVLGG 130
           A  SD V  G
Sbjct: 158 AVCSDHVGAG 167


>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
          Length = 2003

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)

Query: 63   EDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEAS 122
            E  E   A   R  R        L+E +   +EEEA     G E RRR     ++ T+  
Sbjct: 1375 EQLEEEAAARERAGRELQTAQAQLSE-WRRRQEEEAGALEAGEEARRRAAREAEALTQRL 1433

Query: 123  GSDVVLGGRSGAGDSRVLQELQERP---SQRHQMLYLRQKDANELKTILRELKYRIGIQS 179
                    R   G  R+ QEL +      Q+ Q++   +K   +   +L E       + 
Sbjct: 1434 AEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAE-------EK 1486

Query: 180  AKLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAV-ARLE 231
            A +LR +++++R   + +       +  +A+ +++  +  + RQ+RA+ A LE
Sbjct: 1487 AAVLRAVEERERAEAEGREREARALSLTRALEEEQEAREELERQNRALRAELE 1539


>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
          Length = 1995

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)

Query: 63   EDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEAS 122
            E  E   A   R  R        L+E +   +EEEA     G E RRR     ++ T+  
Sbjct: 1367 EQLEEEAAARERAGRELQTAQAQLSE-WRRRQEEEAGALEAGEEARRRAAREAEALTQRL 1425

Query: 123  GSDVVLGGRSGAGDSRVLQELQERP---SQRHQMLYLRQKDANELKTILRELKYRIGIQS 179
                    R   G  R+ QEL +      Q+ Q++   +K   +   +L E       + 
Sbjct: 1426 AEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAE-------EK 1478

Query: 180  AKLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAV-ARLE 231
            A +LR +++++R   + +       +  +A+ +++  +  + RQ+RA+ A LE
Sbjct: 1479 AAVLRAVEERERAEAEGREREARALSLTRALEEEQEAREELERQNRALRAELE 1531


>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
          Length = 2036

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)

Query: 63   EDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEAS 122
            E  E   A   R  R        L+E +   +EEEA     G E RRR     ++ T+  
Sbjct: 1408 EQLEEEAAARERAGRELQTAQAQLSE-WRRRQEEEAGALEAGEEARRRAAREAEALTQRL 1466

Query: 123  GSDVVLGGRSGAGDSRVLQELQERP---SQRHQMLYLRQKDANELKTILRELKYRIGIQS 179
                    R   G  R+ QEL +      Q+ Q++   +K   +   +L E       + 
Sbjct: 1467 AEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAE-------EK 1519

Query: 180  AKLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAV-ARLE 231
            A +LR +++++R   + +       +  +A+ +++  +  + RQ+RA+ A LE
Sbjct: 1520 AAVLRAVEERERAEAEGREREARALSLTRALEEEQEAREELERQNRALRAELE 1572


>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
          Length = 1058

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 28  LESQEEETIPAAPPA-----PRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLV 82
           LE  EE+     P A     PRL    +  +RSR T  GD + E  E+ G R      L 
Sbjct: 769 LEGFEEDGAALGPEAGEEVLPRLETLLQPRKRSRSTC-GDSEVEE-ESPGKR------LD 820

Query: 83  SGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEASGS 124
           +GL N       E+E  GGG G +   RRR + +SS  +S S
Sbjct: 821 AGLTNGFGGARSEQEP-GGGLGRKATPRRRCASESSISSSNS 861


>gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
          Length = 288

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 5   PTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDED 64
           P   G PG  +  + +GGG  A  E       PAAP  P++      P+  R     DED
Sbjct: 44  PFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDED 103

Query: 65  TEPGEACGGRTSRTAS 80
              GEA  G  S+ A+
Sbjct: 104 GAAGEA--GPVSKAAA 117


>gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]
          Length = 288

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 5   PTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDED 64
           P   G PG  +  + +GGG  A  E       PAAP  P++      P+  R     DED
Sbjct: 44  PFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDED 103

Query: 65  TEPGEACGGRTSRTAS 80
              GEA  G  S+ A+
Sbjct: 104 GAAGEA--GPVSKAAA 117


>gi|47777330 hypothetical protein LOC115939 [Homo sapiens]
          Length = 312

 Score = 35.4 bits (80), Expect = 0.047
 Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 25/102 (24%)

Query: 13  LRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERP----RRSRDTWDGD--EDTE 66
           L+ E EF     E+    QEEE  P    + R  G   RP    R   DT D D  ED  
Sbjct: 215 LQAEQEFLANAKES---PQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPG 271

Query: 67  PGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGR 108
           PG   GG +S              SC EEE+    GRGAE R
Sbjct: 272 PGAERGGASS--------------SCCEEEQTQ--GRGAEAR 297


>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
          Length = 556

 Score = 34.7 bits (78), Expect = 0.080
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 53  RRSRDTWDGDEDTEPGE--ACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRR- 109
           +R   + + +ED+  GE  A G R        SG  ++L     + EA GG +G    R 
Sbjct: 327 KRLSGSSEDEEDSGKGEPTAKGSRKMARLGSTSGEESDLEREVSDSEAGGGPQGERKNRS 386

Query: 110 -----RRRDSLDSSTEASGSDVVLGGRSGAG 135
                R+  +  SS+ + GS    GG++G+G
Sbjct: 387 SKKSSRKGRTRSSSSSSDGSPEAKGGKAGSG 417


>gi|51317366 myosin XVIIIB [Homo sapiens]
          Length = 2567

 Score = 34.7 bits (78), Expect = 0.080
 Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 5   PTGGGRPGLR----TELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
           P  GG PG R     E   R G G   LE++ E      P  P L   AERPR  ++  D
Sbjct: 432 PGKGGWPGSRGQEAEEPCSRAGDGAGALETELE-----GPSQPALEKDAERPRIRKENQD 486

Query: 61  GDEDTEPGEACGGRTSRTA 79
           G    E G+    R S  A
Sbjct: 487 GPAPQEEGKGGQSRDSDQA 505


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score = 34.7 bits (78), Expect = 0.080
 Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 18  EFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSR 77
           E R G G  +   ++EE    +P  PR   AA           G E+  P  +  G  SR
Sbjct: 356 EDRVGDGPQQEPGEDEERRERSPEGPREEEAA-----------GGEEESPDSSPHGEASR 404

Query: 78  TASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEASGS--DVVLGGRSG 133
            A+     L+      EE  A G G  A    RR D   S   A G   D+ L  ++G
Sbjct: 405 GAAEPEAQLSN--HLAEEGPAEGSGEAARVNGRREDGEASEPRALGQEHDITLFVKAG 460


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 7   GGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDT- 65
           G  +PGL T    RGGGG +  E       P+ P A +      RPRR+R     +  T 
Sbjct: 186 GVHQPGLPTHAALRGGGGGS--EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTG 243

Query: 66  EPGEACGGRTSRTASLVSGLLNELYSCTEEEEAA----GGGRG---AEGRRR 110
               A  G+ SR  + V        + T    AA    GG RG   A+GR R
Sbjct: 244 RAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 7   GGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDT- 65
           G  +PGL T    RGGGG +  E       P+ P A +      RPRR+R     +  T 
Sbjct: 186 GVHQPGLPTHAALRGGGGGS--EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTG 243

Query: 66  EPGEACGGRTSRTASLVSGLLNELYSCTEEEEAA----GGGRG---AEGRRR 110
               A  G+ SR  + V        + T    AA    GG RG   A+GR R
Sbjct: 244 RAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 7   GGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDT- 65
           G  +PGL T    RGGGG +  E       P+ P A +      RPRR+R     +  T 
Sbjct: 186 GVHQPGLPTHAALRGGGGGS--EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTG 243

Query: 66  EPGEACGGRTSRTASLVSGLLNELYSCTEEEEAA----GGGRG---AEGRRR 110
               A  G+ SR  + V        + T    AA    GG RG   A+GR R
Sbjct: 244 RAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 61/251 (24%)

Query: 22  GGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASL 81
           GGG      + E   P  PP    RG   R ++   +        P  +  G+T  T S 
Sbjct: 173 GGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSR 232

Query: 82  VSG-------------------LLNEL--YSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
            SG                   L +EL  +   +E  AA         +    S   S+ 
Sbjct: 233 NSGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGGSSSRSSP 292

Query: 121 ASGSDVVL-----------------------GGRSGAGDSRVL--------QELQERPSQ 149
            SG   V                        G  SG G             Q+LQE+   
Sbjct: 293 VSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEM 352

Query: 150 RHQMLYLRQK------DANELKTILRELKYRIGIQSAKLLRHLKQKDRLLHKVQRNCDIV 203
           + +M  LR++      + +EL+T + E++     + A  L+ ++ +   L +  +NC I+
Sbjct: 353 QEEMEKLREENETLKNEIDELRTEMDEMRDTFFEEDACQLQEMRHE---LERANKNCRIL 409

Query: 204 TACLQAVSQKR 214
              L+   +KR
Sbjct: 410 QYRLRKAERKR 420


>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
          Length = 4314

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 131  RSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSAKLLRHLKQKD 190
            R     S +L+  Q+      QM+ +  +DA+E KT L  LK+RI  +  K+     + D
Sbjct: 2916 RKAGEQSVLLKTKQDEADAALQMITVSMQDASEQKTELERLKHRIAEEVVKIEERKNKID 2975

Query: 191  RLLHKVQ 197
              L +VQ
Sbjct: 2976 DELKEVQ 2982


>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
           sapiens]
          Length = 331

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 32  EEETIPAAPPAPRLRGAAERPR--RSRDTWDGDEDTEPGEACG 72
           E +  P+APPAPR   A  RP+   SR+  + DE+ EPGEA G
Sbjct: 180 EAQAPPSAPPAPRAE-AEVRPKIPGSREAAENDEE-EPGEATG 220


>gi|4757962 cyclin-dependent kinase inhibitor 1B [Homo sapiens]
          Length = 198

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 24  GEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPG-------EACGGRTS 76
           G  ++ +QE + +  + PA  L GA   P  S DT   D  T+P        E C G   
Sbjct: 97  GACKVPAQESQDVSGSRPAAPLIGA---PANSEDTHLVDPKTDPSDSQTGLAEQCAGIRK 153

Query: 77  RTASLVSGLLNELYSCTEEEEAAG 100
           R A+  S   N+  + TEE  + G
Sbjct: 154 RPATDDSSTQNKRANRTEENVSDG 177


>gi|150170699 kinesin family member 26A [Homo sapiens]
          Length = 1882

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 33   EETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSC 92
            EE  P  P  P        PRR            P     G  S  +S++SG L      
Sbjct: 1600 EERPPTGPALPSPYSKVTAPRR------------PQRYSSGHGSDNSSVLSGELPPAMGR 1647

Query: 93   TEEEEAAGGGRGAEGRRRRRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPS--QR 150
            T     +GG  G E  RR  ++  S++ A  S    G  S    +R L+  ++R +  QR
Sbjct: 1648 TALFHHSGGSSGYESLRRDSEATGSASSAPDSMSESGAASPGARTRSLKSPKKRATGLQR 1707

Query: 151  HQML 154
             +++
Sbjct: 1708 RRLI 1711


>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
          Length = 385

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 102 GRGAEGRRRRRD-SLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPS 148
           GRG EGR R RD   D +   S S   L  RS  G +R  +E  ERPS
Sbjct: 7   GRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPS 54



 Score = 28.9 bits (63), Expect = 4.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 18 EFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEA 70
          E RG G +   +     +   +P +PR R  + R RR        EDTEP ++
Sbjct: 11 EGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDS 63


>gi|195976782 Paf1/RNA polymerase II complex component [Homo
           sapiens]
          Length = 710

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 68  GEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEG-----RRRRRDSLDSSTEAS 122
           G  C GR +  A+ V+  L    +  +E    GG RG+ G     +R+ R  +DS TE S
Sbjct: 3   GRLCVGRAAAAAAAVAVPL----AGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDS 58

Query: 123 GSD 125
           GSD
Sbjct: 59  GSD 61


>gi|209862785 anoctamin 2 [Homo sapiens]
          Length = 998

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 17/79 (21%)

Query: 11 PGLRTELEFRGG--GGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPG 68
          PG    L  + G  GG+     Q+   +P  P AP L+G + R              +PG
Sbjct: 9  PGSPRRLSPQAGSRGGQGPKHGQQCLKMPG-PRAPGLQGGSNR--------------DPG 53

Query: 69 EACGGRTSRTASLVSGLLN 87
          + CGG ++R++S+++  L+
Sbjct: 54 QPCGGESTRSSSVINNYLD 72


>gi|109637763 calpastatin isoform h [Homo sapiens]
          Length = 769

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 37  PAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEE 96
           PAA P PR   AA R          +  ++PGE  G    + ASL S   +  Y      
Sbjct: 8   PAASPRPRRAAAARRTHEHVSEKTSESPSKPGEKKGSDEKKAASLGSSQSSRTY------ 61

Query: 97  EAAGGGRGAEGRRRRRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYL 156
             AGG   A           +   AS             +++ ++   E+ SQ  ++  +
Sbjct: 62  --AGGTASA-----------TKVSASSGATSKSSSMNPTETKAVKTEPEKKSQSTKLSVV 108

Query: 157 RQKDANELK 165
            +K + E K
Sbjct: 109 HEKKSQEGK 117


>gi|109637757 calpastatin isoform e [Homo sapiens]
          Length = 756

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 37  PAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEE 96
           PAA P PR   AA R          +  ++PGE  G    + ASL S   +  Y      
Sbjct: 8   PAASPRPRRAAAARRTHEHVSEKTSESPSKPGEKKGSDEKKAASLGSSQSSRTY------ 61

Query: 97  EAAGGGRGAEGRRRRRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYL 156
             AGG   A           +   AS             +++ ++   E+ SQ  ++  +
Sbjct: 62  --AGGTASA-----------TKVSASSGATSKSSSMNPTETKAVKTEPEKKSQSTKLSVV 108

Query: 157 RQKDANELK 165
            +K + E K
Sbjct: 109 HEKKSQEGK 117


>gi|40354197 THAP domain containing 11 [Homo sapiens]
          Length = 314

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 122 SGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSAK 181
           +GSD      SG  +  +L++L E+      +L L +    E+K  +R L+    +  AK
Sbjct: 240 TGSDHSYSLSSGTTEEELLRKLNEQ----RDILALMEVKMKEMKGSIRHLR----LTEAK 291

Query: 182 LLRHLKQKDRLL 193
           L   L++KDRLL
Sbjct: 292 LREELREKDRLL 303


>gi|41393610 Ras association (RalGDS/AF-6) domain family 6 isoform b
           [Homo sapiens]
          Length = 369

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 136 DSRVLQELQERPSQRHQMLYLRQKDANELKT-ILRELKYRIGIQSAKLLR----HLKQKD 190
           D  +LQ L + PS+++  ++L  KDA E+ + + + + +   +  + L R      ++  
Sbjct: 281 DIPLLQRLLQGPSEKNARIFLMDKDAEEISSDVAQYINFHFSLLESILQRLNEEEKREIQ 340

Query: 191 RLLHKVQRNCDIVTACLQ 208
           R++ K  +   I+  CLQ
Sbjct: 341 RIVTKFNKEKAIILKCLQ 358


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,718,278
Number of Sequences: 37866
Number of extensions: 526732
Number of successful extensions: 2730
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 2626
Number of HSP's gapped (non-prelim): 239
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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