Guide to the Human Genome
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Name: NSMCE4A Sequence: fasta or formatted (385aa) NCBI GI: 8923009
Description:

non-SMC element 4 homolog A

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         21           1
 C cysteine            0.5          2           1
 D aspartate           7.0         27           1
 E glutamate          11.2         43           2
 F phenylalanine       4.7         18           2
 G glycine             4.9         19           1
 H histidine           2.6         10           1
 I isoleucine          5.5         21           2
 K lysine              2.6         10           1
 L leucine             7.5         29           2
 M methionine          2.1          8           2
 N asparagine          3.4         13           1
 P proline             6.5         25           1
 Q glutamine           4.2         16           2
 R arginine           11.2         43           2
 S serine              8.3         32           2
 T threonine           4.7         18           1
 V valine              5.7         22           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   non-SMC element 4 homolog A 
EID3                  0.388   EP300 interacting inhibitor of differentiation 3 [Ho...
PRPF4B                0.020   serine/threonine-protein kinase PRP4K 
SNRNP70               0.019   U1 small nuclear ribonucleoprotein 70 kDa 
PNMAL2                0.017   PNMA-like 2 
LOC100293644          0.017   PREDICTED: hypothetical protein 
LOC100287563          0.017   PREDICTED: hypothetical protein 
LOC100287563          0.017   PREDICTED: hypothetical protein XP_002343733 
DDX46                 0.017   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
SFRS18                0.017   splicing factor, arginine/serine-rich 130 
CROP                  0.017   cisplatin resistance-associated overexpressed protei...
CROP                  0.017   cisplatin resistance-associated overexpressed protei...
SFRS18                0.017   splicing factor, arginine/serine-rich 130 
FAM76B                0.016   hypothetical protein LOC143684 
SFRS5                 0.016   splicing factor, arginine/serine-rich 5 
SFRS5                 0.016   splicing factor, arginine/serine-rich 5 
SNRNP27               0.016   small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho...
SFRS12                0.016   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.016   splicing factor, arginine/serine-rich 12 isoform b [...
DDX23                 0.016   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DIDO1                 0.015   death inducer-obliterator 1 isoform c 
ZRSR2                 0.015   U2 small nuclear RNA auxiliary factor 1-like 2 
SFRS15                0.015   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.015   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.015   splicing factor, arginine/serine-rich 15 isoform 1 [...
SFRS4                 0.015   splicing factor, arginine/serine-rich 4 
CCAR1                 0.015   cell-cycle and apoptosis regulatory protein 1 
EID1                  0.015   CREBBP/EP300 inhibitor 1 
SRRM2                 0.015   splicing coactivator subunit SRm300 
KDM2A                 0.013   F-box and leucine-rich repeat protein 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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