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Search of human proteins with 239750208
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750208 PREDICTED: hypothetical protein [Homo sapiens]
(92 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750208 PREDICTED: hypothetical protein [Homo sapiens] 197 2e-51
gi|239744514 PREDICTED: hypothetical protein [Homo sapiens] 197 2e-51
gi|4503893 beta-1,4-N-acetyl-galactosaminyl transferase 1 [Homo ... 33 0.038
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 31 0.25
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 28 1.2
gi|239751159 PREDICTED: hypothetical protein XP_002347733 [Homo ... 28 1.6
gi|239745646 PREDICTED: hypothetical protein XP_002344168 [Homo ... 28 1.6
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 28 1.6
gi|50083293 coiled-coil domain containing 123 [Homo sapiens] 28 2.1
gi|239756970 PREDICTED: hypothetical protein XP_002345126 [Homo ... 27 2.7
gi|239751479 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|31581524 cordon-bleu homolog [Homo sapiens] 27 2.7
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 27 2.7
gi|4504713 insulinoma-associated 1 [Homo sapiens] 27 2.7
gi|155969701 espin-like [Homo sapiens] 27 2.7
gi|239746599 PREDICTED: hypothetical protein XP_002343795 [Homo ... 27 3.5
gi|195947374 claudin 5 [Homo sapiens] 27 3.5
gi|195947372 claudin 5 [Homo sapiens] 27 3.5
gi|63478060 PHD finger protein 6 isoform 2 [Homo sapiens] 27 3.5
gi|38045915 pregnancy-associated plasma protein A preproprotein ... 27 4.6
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ... 27 4.6
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 27 4.6
gi|169166769 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ... 27 4.6
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 27 4.6
>gi|239750208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 92
Score = 197 bits (501), Expect = 2e-51
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MPRGRRLGMVFAPPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGN 60
MPRGRRLGMVFAPPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGN
Sbjct: 1 MPRGRRLGMVFAPPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGN 60
Query: 61 YQTHSLSPGSLPSSGTEKAHHGLHSRTRQDRM 92
YQTHSLSPGSLPSSGTEKAHHGLHSRTRQDRM
Sbjct: 61 YQTHSLSPGSLPSSGTEKAHHGLHSRTRQDRM 92
>gi|239744514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 92
Score = 197 bits (501), Expect = 2e-51
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MPRGRRLGMVFAPPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGN 60
MPRGRRLGMVFAPPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGN
Sbjct: 1 MPRGRRLGMVFAPPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGN 60
Query: 61 YQTHSLSPGSLPSSGTEKAHHGLHSRTRQDRM 92
YQTHSLSPGSLPSSGTEKAHHGLHSRTRQDRM
Sbjct: 61 YQTHSLSPGSLPSSGTEKAHHGLHSRTRQDRM 92
>gi|4503893 beta-1,4-N-acetyl-galactosaminyl transferase 1 [Homo
sapiens]
Length = 533
Score = 33.5 bits (75), Expect = 0.038
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 7 LGMVFAPPR--PGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQG----N 60
LG+++A R PG R APW P + RRP+ + + PEP + R ++ + G N
Sbjct: 20 LGLLYASTRDAPGLRLPLAPWAPPQSPRRPE-LPDLAPEPRYAHIPVRIKEQVVGLLAWN 78
Query: 61 YQTHSLSPGSLP 72
+ S G LP
Sbjct: 79 NCSCESSGGGLP 90
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 30.8 bits (68), Expect = 0.25
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 12 APPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLS---- 67
A P+ G R A W P+R R H + + ++ G + HS+
Sbjct: 73 AMPKMGVRARVADWPPKREALRE----------HSNPSPSQDTDGTKATKMAHSMRSIQN 122
Query: 68 ---PGSLPSSGTEKAHHGLHSRTRQD 90
P S P+S KA H L R +D
Sbjct: 123 GQPPTSTPASSGSKAFHRLSRRRSKD 148
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 12 APPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVST 48
APPRP G W RR RR DG+ P P ST
Sbjct: 268 APPRPAWAGLGPFW-HLRRSRRQDGLCCPGPRPPSST 303
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 12 APPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVST 48
APPRP G W RR RR DG+ P P ST
Sbjct: 268 APPRPAWAGLGPFW-HLRRSRRQDGLCCPGPRPPSST 303
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 12 APPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVST 48
APPRP G W RR RR DG+ P P ST
Sbjct: 268 APPRPAWAGLGPFW-HLRRSRRQDGLCCPGPRPPSST 303
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 14 PRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPS 73
PR G+R AP P RR+R P S P P S + + LSP +LP
Sbjct: 239 PRRGKR---APRPPLRRRRLPAAASAPAPVPRPSQPRRPGTPEAVASRAVAGLSP-ALPP 294
Query: 74 SGTEKAHHGLHSR 86
G E+ G R
Sbjct: 295 GGLEEMAQGSGGR 307
>gi|239751159 PREDICTED: hypothetical protein XP_002347733 [Homo
sapiens]
Length = 125
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 13 PPRPGQRQAGAPWVPERRKRRPDG 36
P R GA WVP RR ++P G
Sbjct: 31 PDRSTDTAVGATWVPHRRGKKPGG 54
>gi|239745646 PREDICTED: hypothetical protein XP_002344168 [Homo
sapiens]
Length = 125
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 13 PPRPGQRQAGAPWVPERRKRRPDG 36
P R GA WVP RR ++P G
Sbjct: 31 PDRSTDTAVGATWVPHRRGKKPGG 54
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 11 FAPPRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQT 63
F P RPG R G P PE RK T A R Q Q NYQT
Sbjct: 286 FLPQRPGPRPPGLPARPEARK------VTSANRARFRRAANRHPQFPQYNYQT 332
>gi|50083293 coiled-coil domain containing 123 [Homo sapiens]
Length = 783
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 27 PERRKRRPDGVSTV----FPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSGT 76
P +R R VS+V F EP+ +T+Q R R N+Q+ SLPS T
Sbjct: 71 PRQRSRSESDVSSVEQDSFIEPYATTSQLRPRP----NWQSEMGRRSSLPSFET 120
>gi|239756970 PREDICTED: hypothetical protein XP_002345126 [Homo
sapiens]
Length = 148
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/70 (22%), Positives = 25/70 (35%)
Query: 19 RQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSGTEK 78
R P P + GV + +P + R+G+ G S+ PG+ P+ G
Sbjct: 30 RDGVQPKCPRTQTALRIGVGSTWPLATAQVLRSERREGILGTSGHSSMEPGAAPAHGGHL 89
Query: 79 AHHGLHSRTR 88
G R
Sbjct: 90 PSGGTRPHAR 99
>gi|239751479 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/70 (22%), Positives = 25/70 (35%)
Query: 19 RQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSGTEK 78
R P P + GV + +P + R+G+ G S+ PG+ P+ G
Sbjct: 30 RDGVQPKCPRTQTALRIGVGSTWPLATAQVLRSERREGILGTSGHSSMEPGAAPAHGGHL 89
Query: 79 AHHGLHSRTR 88
G R
Sbjct: 90 PSGGTRPHAR 99
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 31 KRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSGTEKAHHGLHSR 86
+R PDG P PH S Q R+ + G+ + S P G+ H L R
Sbjct: 1013 RRAPDGTDP--PPPHTSDTQACSRELVNGSVRAPGHGEPSHPPGGSGTESHILLER 1066
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 24 PWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLS 67
P +P + + V T P+ S QC +RQGL+ N + ++S
Sbjct: 648 PLMPMSQPQFRPHVQTAQPQASSSRMQCPQRQGLRHNTTSQNVS 691
>gi|4504713 insulinoma-associated 1 [Homo sapiens]
Length = 510
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 31 KRRPDGVSTVFPEPHVST-AQCRERQGLQGNYQTHSLSPGSLPSSGTEKAHHGLHSRTRQ 89
K RP + PEP + A+ RE G G + SPG + SG+E + H ++
Sbjct: 318 KPRPAPAAARAPEPEAAARAEAREAPG--GGSDRDTPSPGGVSESGSEDGLYECHHCAKK 375
Query: 90 DR 91
R
Sbjct: 376 FR 377
>gi|155969701 espin-like [Homo sapiens]
Length = 1005
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 6 RLGMVFAPPRPGQRQ---------------AGAPWVPERRKRRPDGVSTVFPE------- 43
R G+ PRPG + AGA P+ R + + +F
Sbjct: 695 RSGLASGEPRPGDTEEASDSGISCEEVPSEAGAAAGPDLASLRKERIIMLFLSHWRRSAY 754
Query: 44 -PHVSTAQCR----ERQGLQGNYQTHSLSPGSLPSSGTEKAH 80
P + T CR GL+G S P S PS G H
Sbjct: 755 TPALKTVACRTLGARHAGLRGQEAARSPGPPSPPSEGPRLGH 796
>gi|239746599 PREDICTED: hypothetical protein XP_002343795 [Homo
sapiens]
Length = 443
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 27 PERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSGTEKA 79
P RR+ + D ST P + Q R + + G+ Q H P+ G +K+
Sbjct: 4 PHRRQSQMDAASTRAPPRPSAPQQGRRQPSMPGSAQCHHRPDPHPPAPGKKKS 56
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 16 PGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSG 75
PG R G PE KR P G S T + R+ +G G + P
Sbjct: 11 PGGRARGTESAPEPSKRVPPGRSW-------QTQEVRQTRGANGLGPRAGSAGAKAPGPA 63
Query: 76 TEKAHHGL 83
A HGL
Sbjct: 64 QGAAQHGL 71
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 16 PGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSG 75
PG R G PE KR P G S T + R+ +G G + P
Sbjct: 11 PGGRARGTESAPEPSKRVPPGRSW-------QTQEVRQTRGANGLGPRAGSAGAKAPGPA 63
Query: 76 TEKAHHGL 83
A HGL
Sbjct: 64 QGAAQHGL 71
>gi|63478060 PHD finger protein 6 isoform 2 [Homo sapiens]
Length = 312
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 30 RKRRPDGVSTVFPEPHVSTAQCRERQGLQGNYQTHSLSPGSLPSSGTEKAHHGLHSRT 87
R++ G+ V+ H TA E L+ ++ H L P S S +K+ G +T
Sbjct: 116 REKPSQGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSK--KKSRKGRPRKT 171
>gi|38045915 pregnancy-associated plasma protein A preproprotein [Homo
sapiens]
Length = 1627
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 42 PEPHVSTAQCRERQGLQGNYQTHSLSPG-SLPSSGTEKAHHGLHSRTRQD 90
P + TA+CRE + G++ + PG +P S + ++ QD
Sbjct: 1353 PNADLQTARCRENKHKVGSFCKYKCKPGYHVPGSSRKSKKRAFKTQCTQD 1402
>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 576
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 2 PRGRRLGMVFAPPRPGQRQAGAPWVP-ERRKRRPDGVSTVFPEP 44
P GR L G+++AGA P RR+RR G S +P P
Sbjct: 249 PAGRELEGPGGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHP 292
>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 3 RGRRLGMVFAPP----------RPGQRQAGAPWVPERR 30
R RRLG A P RPG+ + G W P +R
Sbjct: 42 RSRRLGESTAKPGARTGHSPPTRPGRHRGGCAWTPNQR 79
>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
sapiens]
Length = 404
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 2 PRGRRLGMVFAPPRPGQRQAGAPWVP-ERRKRRPDGVSTVFPEP 44
P GR L G+++AGA P RR+RR G S +P P
Sbjct: 249 PAGRELEGPGGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHP 292
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 PRGRRLGMVFAP------PRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQ 55
PRGR P P PG + AP PE R+ R G ST P Q E
Sbjct: 229 PRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPG-STAGRRPRPREPQAAEES 287
Query: 56 G 56
G
Sbjct: 288 G 288
>gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 3 RGRRLGMVFAPP----------RPGQRQAGAPWVPERR 30
R RRLG A P RPG+ + G W P +R
Sbjct: 42 RSRRLGESTAKPGARTGHSPPARPGRHRGGCAWTPNQR 79
>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
sapiens]
Length = 404
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 2 PRGRRLGMVFAPPRPGQRQAGAPWVP-ERRKRRPDGVSTVFPEP 44
P GR L G+++AGA P RR+RR G S +P P
Sbjct: 249 PAGRELEGPGGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHP 292
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 PRGRRLGMVFAP------PRPGQRQAGAPWVPERRKRRPDGVSTVFPEPHVSTAQCRERQ 55
PRGR P P PG + AP PE R+ R G ST P Q E
Sbjct: 229 PRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPG-STAGRRPRPREPQAAEES 287
Query: 56 G 56
G
Sbjct: 288 G 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,832,400
Number of Sequences: 37866
Number of extensions: 246291
Number of successful extensions: 947
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 59
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.