Guide to the Human Genome
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Name: LOC100294382 Sequence: fasta or formatted (148aa) NCBI GI: 239751479
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         12           2
 C cysteine            2.0          3           1
 D aspartate           1.4          2           1
 E glutamate           6.1          9           1
 F phenylalanine       2.0          3           1
 G glycine            14.9         22           2
 H histidine           4.7          7           1
 I isoleucine          2.0          3           1
 K lysine              2.7          4           1
 L leucine            10.1         15           3
 M methionine          1.4          2           1
 N asparagine          0.7          1           1
 P proline             4.7          7           1
 Q glutamine           5.4          8           2
 R arginine            8.1         12           2
 S serine              9.5         14           2
 T threonine           8.8         13           1
 V valine              4.7          7           1
 W tryptophan          2.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291926          1.000   PREDICTED: hypothetical protein XP_002345126 
RAVER1                0.035   RAVER1 
TECPR1                0.018   tectonin beta-propeller repeat containing 1 
LOC100290649          0.014   PREDICTED: hypothetical protein XP_002348220 
LOC100289318          0.014   PREDICTED: hypothetical protein XP_002343871 
ABAT                  0.011   4-aminobutyrate aminotransferase precursor 
ABAT                  0.011   4-aminobutyrate aminotransferase precursor 
ABAT                  0.011   4-aminobutyrate aminotransferase precursor 
PKP4                  0.011   plakophilin 4 isoform b 
PKP4                  0.011   plakophilin 4 isoform a 
LOC728317             0.011   PREDICTED: hypothetical protein 
LOC728317             0.011   PREDICTED: hypothetical protein 
TEP1                  0.007   telomerase-associated protein 1 
TBX2                  0.007   T-box 2 
AXIN1                 0.007   axin 1 isoform a 
AXIN1                 0.007   axin 1 isoform b 
FLJ39051              0.007   PREDICTED: hypothetical protein 
FLJ39051              0.007   PREDICTED: hypothetical protein 
KCTD18                0.007   potassium channel tetramerization domain containing ...
PHF12                 0.007   PHD finger protein 12 isoform 1 
LOC100131891          0.007   PREDICTED: hypothetical protein 
LOC100131891          0.007   PREDICTED: hypothetical protein 
LOC100131891          0.007   PREDICTED: hypothetical protein 
EVX2                  0.007   even-skipped homeobox 2 
PRDM10                0.007   PR domain containing 10 isoform 2 
PRDM10                0.007   PR domain containing 10 isoform 4 
PRDM10                0.007   PR domain containing 10 isoform 1 
PRDM10                0.007   PR domain containing 10 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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