Guide to the Human Genome
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Name: LOC100287036 Sequence: fasta or formatted (125aa) NCBI GI: 239745646
Description:

PREDICTED: hypothetical protein XP_002344168

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          7           1
 C cysteine            1.6          2           1
 D aspartate           4.0          5           1
 E glutamate           4.8          6           1
 F phenylalanine       1.6          2           1
 G glycine             9.6         12           2
 H histidine           4.0          5           1
 I isoleucine          4.8          6           1
 K lysine              8.0         10           2
 L leucine             4.8          6           1
 M methionine          1.6          2           1
 N asparagine          1.6          2           1
 P proline             9.6         12           2
 Q glutamine           2.4          3           1
 R arginine            6.4          8           2
 S serine              6.4          8           1
 T threonine          11.2         14           2
 V valine              9.6         12           1
 W tryptophan          2.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344168 
LOC100290102          1.000   PREDICTED: hypothetical protein XP_002347733 
LOC100291743          0.021   PREDICTED: hypothetical protein XP_002344931 
LOC100288859          0.021   PREDICTED: hypothetical protein XP_002343508 
MYOM1                 0.017   myomesin 1 isoform b 
MYOM1                 0.017   myomesin 1 isoform a 
FLJ39051              0.013   PREDICTED: hypothetical protein 
FLJ39051              0.013   PREDICTED: hypothetical protein 
SALL2                 0.013   sal-like 2 
CDON                  0.013   surface glycoprotein, Ig superfamily member 
MLL4                  0.008   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100293834          0.008   PREDICTED: similar to hCG2022304 
LOC284072             0.008   PREDICTED: hypothetical protein 
LOC100289341          0.008   PREDICTED: hypothetical protein XP_002344248 
CLSTN2                0.008   calsyntenin 2 
BOC                   0.008   brother of CDO 
LOC100291756          0.004   PREDICTED: hypothetical protein XP_002345525 
LOC284072             0.004   PREDICTED: hypothetical protein 
LOC100288538          0.004   PREDICTED: hypothetical protein 
LOC100288538          0.004   PREDICTED: hypothetical protein XP_002343816 
RBPJL                 0.004   recombining binding protein L 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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