Guide to the Human Genome
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Name: B4GALNT1 Sequence: fasta or formatted (533aa) NCBI GI: 4503893
Description:

beta-1,4-N-acetyl-galactosaminyl transferase 1

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids
Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         47           2
 C cysteine            1.5          8           1
 D aspartate           4.9         26           3
 E glutamate           4.5         24           1
 F phenylalanine       4.1         22           2
 G glycine             7.3         39           3
 H histidine           1.9         10           2
 I isoleucine          2.4         13           1
 K lysine              2.3         12           1
 L leucine            12.9         69           3
 M methionine          0.8          4           1
 N asparagine          2.1         11           2
 P proline             7.1         38           2
 Q glutamine           5.1         27           1
 R arginine            8.4         45           2
 S serine              6.9         37           2
 T threonine           6.2         33           2
 V valine              8.3         44           3
 W tryptophan          1.3          7           1
 Y tyrosine            3.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-1,4-N-acetyl-galactosaminyl transferase 1 
B4GALNT2              0.328   beta-1,4-N-acetyl-galactosaminyl transferase 2 isof...
B4GALNT2              0.328   beta-1,4-N-acetyl-galactosaminyl transferase 2 isof...
B4GALNT2              0.328   beta-1,4-N-acetyl-galactosaminyl transferase 2 isof...
SRCAP                 0.014   Snf2-related CBP activator protein 
IRF3                  0.010   interferon regulatory factor 3 
FLJ39051              0.008   PREDICTED: hypothetical protein 
FLJ39051              0.008   PREDICTED: hypothetical protein 
LMTK3                 0.008   lemur tyrosine kinase 3 
FHAD1                 0.008   forkhead-associated (FHA) phosphopeptide binding do...
AGAP2                 0.007   centaurin, gamma 1 isoform PIKE-L 
PDE4A                 0.007   phosphodiesterase 4A isoform 2 
MBD1                  0.007   methyl-CpG binding domain protein 1 isoform 3 [Homo...
NCAPD2                0.007   non-SMC condensin I complex, subunit D2 
RBL2                  0.007   retinoblastoma-like 2 (p130) 
MBD1                  0.007   methyl-CpG binding domain protein 1 isoform 4 
WNK2                  0.007   WNK lysine deficient protein kinase 2 
CHD9                  0.006   chromodomain helicase DNA binding protein 9 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 2 
GALNT12               0.005   N-acetylgalactosaminyltransferase 12 
MYPOP                 0.005   Myb protein P42POP 
SH2D3A                0.005   SH2 domain containing 3A 
ZFPM1                 0.005   zinc finger protein, multitype 1 
CKAP2                 0.005   cytoskeleton associated protein 2 isoform 2 
CKAP2                 0.005   cytoskeleton associated protein 2 isoform 1 
TOX3                  0.005   TOX high mobility group box family member 3 isoform...
TOX3                  0.005   TOX high mobility group box family member 3 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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