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Search of human proteins with 239750015
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750015 PREDICTED: hypothetical protein XP_002347237 [Homo
sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755513 PREDICTED: hypothetical protein [Homo sapiens] 306 5e-84
gi|239750015 PREDICTED: hypothetical protein XP_002347237 [Homo ... 306 5e-84
gi|239744328 PREDICTED: hypothetical protein XP_002343098 [Homo ... 306 5e-84
gi|71043876 undifferentiated embryonic cell transcription factor... 33 0.066
gi|4502175 apical protein of Xenopus-like [Homo sapiens] 32 0.19
gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens] 32 0.25
gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens] 32 0.25
gi|150170670 piccolo isoform 2 [Homo sapiens] 31 0.43
gi|150378539 piccolo isoform 1 [Homo sapiens] 31 0.43
gi|8567388 period 3 [Homo sapiens] 30 0.56
gi|117938759 GNAS complex locus XLas [Homo sapiens] 30 0.56
gi|169209171 PREDICTED: hypothetical protein [Homo sapiens] 30 0.56
gi|19924099 synapsin I isoform Ia [Homo sapiens] 30 0.56
gi|19924097 synapsin I isoform Ib [Homo sapiens] 30 0.56
gi|116235456 ring finger protein 214 [Homo sapiens] 30 0.56
gi|116235451 ring finger protein 214 [Homo sapiens] 30 0.56
gi|239747614 PREDICTED: similar to Putative uncharacterized prot... 30 0.73
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 0.95
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 30 0.95
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 29 1.2
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap... 29 1.2
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 29 1.6
gi|145199237 transcription elongation factor B polypeptide 3 bin... 29 1.6
gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Ho... 29 1.6
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 28 2.1
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 28 2.1
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
>gi|239755513 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 306 bits (783), Expect = 5e-84
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG
Sbjct: 1 MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
Query: 61 NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS
Sbjct: 61 NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
Query: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
QLSLCLKSQNANSVCELNLPVTAGVG
Sbjct: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
>gi|239750015 PREDICTED: hypothetical protein XP_002347237 [Homo
sapiens]
Length = 146
Score = 306 bits (783), Expect = 5e-84
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG
Sbjct: 1 MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
Query: 61 NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS
Sbjct: 61 NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
Query: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
QLSLCLKSQNANSVCELNLPVTAGVG
Sbjct: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
>gi|239744328 PREDICTED: hypothetical protein XP_002343098 [Homo
sapiens]
Length = 146
Score = 306 bits (783), Expect = 5e-84
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG
Sbjct: 1 MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
Query: 61 NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS
Sbjct: 61 NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
Query: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
QLSLCLKSQNANSVCELNLPVTAGVG
Sbjct: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 33.5 bits (75), Expect = 0.066
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 75 KPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGV 119
+P + P +PA P P PG G PR SP+ + ELG+
Sbjct: 7 RPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGL 51
>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
Length = 1616
Score = 32.0 bits (71), Expect = 0.19
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 33/137 (24%)
Query: 7 TGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLL----HHLVPGQA--LSPTSRRKKTERG 60
T A EA+DG+ + +AGL G+ + PL HL QA L TS +++
Sbjct: 651 TAAGEAEDGTG------RWRAGLGGGTQEGPLAGTYKDHLKEAQARVLRATSFKRRDLDP 704
Query: 61 NC---------EQMG-------FWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDK 104
N +MG FW +GL +P P+ TS PP I R A K
Sbjct: 705 NPGDLYPESLEHRMGDPDTVPHFW-EAGLAQP----PSSTSGGPHPPRIGGRRRFTAEQK 759
Query: 105 PREGPSPTKVDELGVSQ 121
+ P K++E+G+++
Sbjct: 760 LKSYSEPEKMNEVGLTR 776
>gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]
Length = 457
Score = 31.6 bits (70), Expect = 0.25
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
Query: 42 LVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIP--ARPGL 99
L PG L+P RR P G P+ PA +AP PP P A PG
Sbjct: 38 LGPGLELAPFERR---------------PEGAPAPAARAPAAPAAPPPPPPPPRTADPGG 82
Query: 100 GAGDKPREG-PSPTK 113
G P E P+P +
Sbjct: 83 SPGPAPAEAEPAPVQ 97
>gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]
Length = 250
Score = 31.6 bits (70), Expect = 0.25
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
Query: 42 LVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIP--ARPGL 99
L PG L+P RR P G P+ PA +AP PP P A PG
Sbjct: 38 LGPGLELAPFERR---------------PEGAPAPAARAPAAPAAPPPPPPPPRTADPGG 82
Query: 100 GAGDKPREG-PSPTK 113
G P E P+P +
Sbjct: 83 SPGPAPAEAEPAPVQ 97
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 30.8 bits (68), Expect = 0.43
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 22 PQKQKAGLERG--------SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGL 73
PQ ++A + RG S P + PG+ + +K++ G + PSGL
Sbjct: 281 PQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPA--QPSGL 338
Query: 74 HKPSVMLPACTSAPAWPPDI---PARPGLGAGDKPRE 107
KP P P PP PA+P LG P +
Sbjct: 339 TKPLAQQPGTVKPPVQPPGTTKPPAQP-LGPAKPPAQ 374
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 30.8 bits (68), Expect = 0.43
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 22 PQKQKAGLERG--------SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGL 73
PQ ++A + RG S P + PG+ + +K++ G + PSGL
Sbjct: 281 PQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPA--QPSGL 338
Query: 74 HKPSVMLPACTSAPAWPPDI---PARPGLGAGDKPRE 107
KP P P PP PA+P LG P +
Sbjct: 339 TKPLAQQPGTVKPPVQPPGTTKPPAQP-LGPAKPPAQ 374
>gi|8567388 period 3 [Homo sapiens]
Length = 1201
Score = 30.4 bits (67), Expect = 0.56
Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 34 MQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSA------P 87
+QL LL +P + SP R+ T C Q + V + S PA T A P
Sbjct: 925 LQLNLLQEEMPRPSESPDQMRRNT----CPQTEYCVTG--NNGSESSPATTGALSTGSPP 978
Query: 88 AWPPDIPARPGLGAGDKPREGPSPTKVDELGVSQLSLCLKSQNANSVCELNLP 140
P P L G P + PS L + S S + LP
Sbjct: 979 RENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMGLP 1031
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 30.4 bits (67), Expect = 0.56
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 63 EQMGFWVPSGLHK------PSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD- 115
EQ GF PSG+H P++M P S ARPGLG P E P + D
Sbjct: 119 EQPGF--PSGVHAGLEAFGPALMEPGAFSG--------ARPGLGGYSPPPEEAMPFEFDQ 168
Query: 116 --ELGVSQLSL 124
+ G SQL L
Sbjct: 169 PAQRGCSQLLL 179
>gi|169209171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 30.4 bits (67), Expect = 0.56
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 32 GSMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPP 91
G+ + P+ L P L P R++ R ++ WV S + + LP P PP
Sbjct: 33 GAPRPPVRSDLAPSDRLLPVPGRRRCARAGLWKI-VWVNSQASRLNARLPPPPLHPLLPP 91
Query: 92 DIPARPGLGAGDKPREGP 109
+ P P+ GP
Sbjct: 92 PLAFNPTRHPHSAPQPGP 109
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 30.4 bits (67), Expect = 0.56
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 16 SKCPFGPQKQKAGLERGSMQLPLLHHLVPG-QALSPTSRRKKTERGNCEQMGFWVPSGLH 74
S+ P GP Q+ +G P PG Q P +++ +G G P+G
Sbjct: 449 SQQPAGPPAQQRPPPQGGPPQP-----GPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSP 503
Query: 75 KPSVMLPACTSAPAWPPDIPARPGLGAGDKPR 106
P LP+ TSAP P A P G G + R
Sbjct: 504 LPQ-RLPSPTSAPQQPASQAAPPTQGQGRQSR 534
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 30.4 bits (67), Expect = 0.56
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 16 SKCPFGPQKQKAGLERGSMQLPLLHHLVPG-QALSPTSRRKKTERGNCEQMGFWVPSGLH 74
S+ P GP Q+ +G P PG Q P +++ +G G P+G
Sbjct: 449 SQQPAGPPAQQRPPPQGGPPQP-----GPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSP 503
Query: 75 KPSVMLPACTSAPAWPPDIPARPGLGAGDKPR 106
P LP+ TSAP P A P G G + R
Sbjct: 504 LPQ-RLPSPTSAPQQPASQAAPPTQGQGRQSR 534
>gi|116235456 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 0.56
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 33 SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWV-PSGLHKPSVMLPACTSAPAWPP 91
S+ P+L+ + Q P+S + N +G V P G H P PA +
Sbjct: 483 SLSFPILNPAL-SQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMP----PAAS------- 530
Query: 92 DIPARPGLGAGDKPREGPSPTKVDELG------VSQLSLCLKSQNANSVCELNLPVTAGV 145
IP PGLG E P P VD+L +++ C K+Q N + ++ T
Sbjct: 531 -IPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMA 589
Query: 146 G 146
G
Sbjct: 590 G 590
>gi|116235451 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 0.56
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 33 SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWV-PSGLHKPSVMLPACTSAPAWPP 91
S+ P+L+ + Q P+S + N +G V P G H P PA +
Sbjct: 483 SLSFPILNPAL-SQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMP----PAAS------- 530
Query: 92 DIPARPGLGAGDKPREGPSPTKVDELG------VSQLSLCLKSQNANSVCELNLPVTAGV 145
IP PGLG E P P VD+L +++ C K+Q N + ++ T
Sbjct: 531 -IPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMA 589
Query: 146 G 146
G
Sbjct: 590 G 590
>gi|239747614 PREDICTED: similar to Putative uncharacterized protein
FLJ44672 [Homo sapiens]
Length = 259
Score = 30.0 bits (66), Expect = 0.73
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 72 GLHKPSVMLPACTSAPAWPPDIPARPGLG 100
GL +P+ LPA + PA PP +RP G
Sbjct: 25 GLSRPTCSLPASSPGPALPPGCVSRPDSG 53
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 29.6 bits (65), Expect = 0.95
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 81 PACTSAPAWPPDIPAR--PGLGAGDKPREGPSPTKVDELGVSQ 121
PA + PA P + AR PG G G P GP P K G +Q
Sbjct: 154 PAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQ 196
Score = 26.6 bits (57), Expect = 8.0
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 84 TSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
T+APA PP A+ G AG P P+P GVS
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAP--APAPAAGGPAGVS 326
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 29.6 bits (65), Expect = 0.95
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 72 GLHKPSVMLPACTSAPAWPPDIPARPGLGAGD-----KPREGPSPTKVDELGVS 120
G P +ML A P PP + PG G G R GP+P LG +
Sbjct: 4 GALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAA 57
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 29.3 bits (64), Expect = 1.2
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 45 GQALSPTSRRKKTERGNCEQMGFW----VPSGLHKPSVMLPACT-SAPAWPPDIPARPGL 99
G A SP RR K R + G P G+ P+ P T AP P P P
Sbjct: 12 GGASSPAERRSKRRRRSGGDGGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMS 71
Query: 100 GAGDKPREGPSPTKVDEL 117
A ++ PS VDE+
Sbjct: 72 SAIERKSLDPSEEPVDEV 89
>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 1.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 43 VPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAG 102
V +AL PT+ + T G E VP G + + A AWP D AR + A
Sbjct: 259 VTEEALKPTAATRTTLLGGKEAQALGVPGGSAETT---EAEWGPAAWPEDKRARLSVAAP 315
Query: 103 DKPR 106
+PR
Sbjct: 316 CQPR 319
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 28.9 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 81 PACTSAPAWPPDIPARPGLGAGDKPREGPSP 111
PA S WP +P RPG GD+ P P
Sbjct: 60 PARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 28.9 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 81 PACTSAPAWPPDIPARPGLGAGDKPREGPSP 111
PA S WP +P RPG GD+ P P
Sbjct: 60 PARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 28.9 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 81 PACTSAPAWPPDIPARPGLGAGDKPREGPSP 111
PA S WP +P RPG GD+ P P
Sbjct: 60 PARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 28.9 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 84 TSAPAWPPDIPARPGL----GAGDKPREGPSPTKVDELGVSQLSL 124
T+ P PP +P PG+ G P +P DE G++ L L
Sbjct: 502 TAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHL 546
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 28.9 bits (63), Expect = 1.6
Identities = 36/113 (31%), Positives = 40/113 (35%), Gaps = 27/113 (23%)
Query: 4 KSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERGNCE 63
K KTGA A G K K ++ P P QA SP R+K ER
Sbjct: 378 KKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRADKKGP-QASSP---RRKAER---- 429
Query: 64 QMGFWVPSGLHK-PSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD 115
P G K PS P TS G G D+P PSPT D
Sbjct: 430 ------PEGTKKKPSSATPVATS------------GKGRPDRPARRPSPTSGD 464
>gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Homo
sapiens]
Length = 445
Score = 28.9 bits (63), Expect = 1.6
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 25/133 (18%)
Query: 2 VGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERGN 61
+G S+ G + P P K G+ + M P + VP Q R+ T + +
Sbjct: 222 IGMSQPGTWQTGLSQPVPRQPNKSPPGMWQRGMWQPGMSQQVPSQL---GMRQPGTSQSS 278
Query: 62 CEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGD----------KPREGPSP 111
Q G P G +P + W P P++PGL D + G S
Sbjct: 279 KNQTGMSHP-GRGQPGI----------WEPG-PSQPGLSQQDLNQLVLSQPGLSQPGRSQ 326
Query: 112 TKVDELGVSQLSL 124
V ++G+ Q S+
Sbjct: 327 PSVSQMGMRQTSM 339
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 28.5 bits (62), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 77 SVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD 115
S+ LP AP PP +PA P P EGP P++ D
Sbjct: 863 SLGLPFSPPAPFRPPPLPASP-------PLEGPFPSQSD 894
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 28.5 bits (62), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 77 SVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD 115
S+ LP AP PP +PA P P EGP P++ D
Sbjct: 800 SLGLPFSPPAPFRPPPLPASP-------PLEGPFPSQSD 831
>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 28.5 bits (62), Expect = 2.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 87 PAWPPDIPARPGLGAGDKPREGPSPTKVDELGVSQLSLCLKSQNANS 133
P PP P R G G GD G + + + G + + C S+ A +
Sbjct: 5 PVPPPSQPGRWGAGTGDADEAGGATGSLCQRGAASANHCSGSEGAGT 51
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,205,487
Number of Sequences: 37866
Number of extensions: 400895
Number of successful extensions: 1475
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 147
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.