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Search of human proteins with 239749627
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo
sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo ... 240 2e-64
gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo ... 240 2e-64
gi|239755146 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|239757298 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo ... 38 0.002
gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo ... 38 0.002
gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo ... 37 0.003
gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo ... 37 0.003
gi|239741677 PREDICTED: hypothetical protein XP_002342280 [Homo ... 37 0.003
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 34 0.028
gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo ... 33 0.037
gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo ... 33 0.037
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 33 0.063
gi|120587019 zinc finger protein 318 [Homo sapiens] 32 0.11
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.11
gi|10863889 squamous cell carcinoma antigen recognized by T cell... 32 0.14
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 31 0.18
gi|239748149 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239742047 PREDICTED: hypothetical protein XP_002342399 [Homo ... 31 0.18
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 31 0.24
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 31 0.24
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 31 0.24
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 31 0.24
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 30 0.31
>gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo
sapiens]
Length = 115
Score = 240 bits (612), Expect = 2e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR
Sbjct: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
Query: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL 115
SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL
Sbjct: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL 115
>gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo
sapiens]
Length = 115
Score = 240 bits (612), Expect = 2e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR
Sbjct: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
Query: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL 115
SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL
Sbjct: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL 115
>gi|239755146 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 237 bits (604), Expect = 2e-63
Identities = 114/115 (99%), Positives = 114/115 (99%)
Query: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR
Sbjct: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
Query: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL 115
SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEA PRAAAWSPSSLYFLNFL
Sbjct: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPSSLYFLNFL 115
>gi|239757298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 44 YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEAPPR 100
+RD+R P +A R GRW S GG R RG L+ G+ E + + AP R
Sbjct: 106 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 165
Query: 101 AAAWSPSSL 109
A A + S+L
Sbjct: 166 AQASARSAL 174
>gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo
sapiens]
Length = 260
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 44 YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEAPPR 100
+RD+R P +A R GRW S GG R RG L+ G+ E + + AP R
Sbjct: 183 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 242
Query: 101 AAAWSPSSL 109
A A + S+L
Sbjct: 243 AQASARSAL 251
>gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo
sapiens]
Length = 260
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 44 YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEAPPR 100
+RD+R P +A R GRW S GG R RG L+ G+ E + + AP R
Sbjct: 183 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 242
Query: 101 AAAWSPSSL 109
A A + S+L
Sbjct: 243 AQASARSAL 251
>gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo
sapiens]
Length = 180
Score = 37.0 bits (84), Expect = 0.003
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 24/122 (19%)
Query: 2 RSHQARLKKTAACESAPCVRLH------RSGRRLSARAG--------QPGATEPPPYRDR 47
RS Q R K + + + H RSG R R G + T PP++
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPL 107
Query: 48 RSHSP-PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSP 106
S S A +PRR+GRW + W L PRV+ P A+AW
Sbjct: 108 SSRSTRSATRSPRRTGRWLNT---------MPSWNVVRLCAMQPRVSRRTCAPLASAWKR 158
Query: 107 SS 108
S+
Sbjct: 159 SA 160
>gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo
sapiens]
Length = 180
Score = 37.0 bits (84), Expect = 0.003
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 24/122 (19%)
Query: 2 RSHQARLKKTAACESAPCVRLH------RSGRRLSARAG--------QPGATEPPPYRDR 47
RS Q R K + + + H RSG R R G + T PP++
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPL 107
Query: 48 RSHSP-PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSP 106
S S A +PRR+GRW + W L PRV+ P A+AW
Sbjct: 108 SSRSTRSATRSPRRTGRWLNT---------MPSWNVVRLCAMQPRVSRRTCAPLASAWKR 158
Query: 107 SS 108
S+
Sbjct: 159 SA 160
>gi|239741677 PREDICTED: hypothetical protein XP_002342280 [Homo
sapiens]
Length = 180
Score = 37.0 bits (84), Expect = 0.003
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 24/122 (19%)
Query: 2 RSHQARLKKTAACESAPCVRLH------RSGRRLSARAG--------QPGATEPPPYRDR 47
RS Q R K + + + H RSG R R G + T PP++
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPL 107
Query: 48 RSHSP-PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSP 106
S S A +PRR+GRW + W L PRV+ P A+AW
Sbjct: 108 SSRSTRSATRSPRRTGRWLNT---------MPSWNVVRLCAMQPRVSRRTCAPLASAWKR 158
Query: 107 SS 108
S+
Sbjct: 159 SA 160
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 38 ATEPPPYRDRR-SHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
A PPP + R S SPP L+AP R PSL R RRR + +G
Sbjct: 275 ARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAG 322
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 38 ATEPPPYRDRR-SHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
A PPP + R S SPP L+AP R PSL R RRR + +G
Sbjct: 275 ARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAG 322
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 40 EPPPYRDRR-SHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
+PPP + R S SPP L+AP R PSL R RRR + +G
Sbjct: 183 KPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAG 228
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 33.9 bits (76), Expect = 0.028
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 25 SGRRLSARAGQPGATEPPP---------YRD-----------RRSHSPPALSAPRRSGRW 64
SG+R A G+PG+ PP RD R SP SAP GR
Sbjct: 317 SGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRG 376
Query: 65 PSLGG-----LRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPS 107
G R R RRR ++ R R APPR ++ S S
Sbjct: 377 GRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLS 424
Score = 27.7 bits (60), Expect = 2.0
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 6 ARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWP 65
+R K+ S+ C R ++ + PG + SHSP +LS+ R P
Sbjct: 218 SRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHR-HSSGSSHSP-SLSSHYSDSRSP 275
Query: 66 SLGGLRER--GRRRLDWRASGLRERSPRVTLGEAPPR 100
S + R GR+ R+SG R SP G P+
Sbjct: 276 SRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQ 312
>gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo
sapiens]
Length = 166
Score = 33.5 bits (75), Expect = 0.037
Identities = 34/95 (35%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 14 CESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALS----APRRSGRWPSLGG 69
C S RL R R SAR G+P +EP R+ PALS APR G+ G
Sbjct: 54 CCSVVAARLLRLTPRSSARRGRP-ESEPATNGTRQQGDLPALSAAAEAPREGGKEEG-AG 111
Query: 70 LRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAW 104
RE G R RA G + P + +A R +W
Sbjct: 112 AREAGAAR--GRARGPQPSPPGSSAAKA--RGRSW 142
>gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo
sapiens]
Length = 166
Score = 33.5 bits (75), Expect = 0.037
Identities = 34/95 (35%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 14 CESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALS----APRRSGRWPSLGG 69
C S RL R R SAR G+P +EP R+ PALS APR G+ G
Sbjct: 54 CCSVVAARLLRLTPRSSARRGRP-ESEPATNGTRQQGDLPALSAAAEAPREGGKEEG-AG 111
Query: 70 LRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAW 104
RE G R RA G + P + +A R +W
Sbjct: 112 AREAGAAR--GRARGPQPSPPGSSAAKA--RGRSW 142
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 32.7 bits (73), Expect = 0.063
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 47 RRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSP 106
RR +P A S+PR+S G +R RRR W G P PP AA+ SP
Sbjct: 140 RRPKTPEAASSPRKS-------GASDRQRRRGGWETCGCEPGRP-----PGPPTAASPSP 187
Query: 107 SS 108
+
Sbjct: 188 GA 189
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 32.0 bits (71), Expect = 0.11
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 24 RSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWP-SLGGLRERGRRRLDWRA 82
RSGR + +G + PPP PP+ S+ R R P S G R R RA
Sbjct: 24 RSGRSSGSSSGPARRSSPPP--------PPSGSSSRTPARRPRSPSGHRGR-------RA 68
Query: 83 SGLRERSPRVTLGEAPPRAAAWSPS 107
S R RV+ +PPRA SPS
Sbjct: 69 SPSPPRGRRVS--PSPPRARRGSPS 91
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 0.11
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 9 KKTAACESAPCVRLHRSGRRLS--ARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPS 66
++ + ++P R RS R S R T P R RS +PPA+ RS R P
Sbjct: 1979 RRRSRSRTSPVTR-RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRS-RTPL 2036
Query: 67 LGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSL 109
L R R R L R R R+PR G+ R+ SP ++
Sbjct: 2037 LPRKRSRSRSPLAIRRRS-RSRTPRTARGK---RSLTRSPPAI 2075
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 16 SAPCVRLHRSG--RRLSARAGQPGA-TEPPPYRDRRSHSPPALSAPRRSGRWPS 66
S+PC + RR + + QP A + PP R R S SPP P++ + PS
Sbjct: 782 SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPP----PKQKSKTPS 831
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 21 RLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRER------G 74
R RS ++R T P P++ RS + PA RS R P + R R
Sbjct: 1838 RRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS-RTPLISRRRSRSRTSPVS 1896
Query: 75 RRRLDWRASGLRERS 89
RRR R S R RS
Sbjct: 1897 RRRSRSRTSVTRRRS 1911
>gi|10863889 squamous cell carcinoma antigen recognized by T cells
1 [Homo sapiens]
Length = 800
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 30 SARAGQPGATEPPP-YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLR 86
+A AG GATE PP +R+ + H R G S G R+R R R R SG R
Sbjct: 17 TAAAGTGGATEQPPRHREHKKHK------HRSGGSGGSGGERRKRSRERGGERGSGRR 68
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 31.2 bits (69), Expect = 0.18
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 7 RLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDR------RSHSPPALSAPRR 60
R + A + P R R PGA P P R R SPP APRR
Sbjct: 148 RHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASPPPRPAPRR 207
Query: 61 SGRWPSL-GGLRERGRRR 77
P GG RGR R
Sbjct: 208 RSTAPRHEGGRPGRGRTR 225
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 31.2 bits (69), Expect = 0.18
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 14 CESAPCVRLHRSG----------RRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGR 63
C +AP + R G RRL A A P A P P + RR +P A+++ +G
Sbjct: 230 CPAAPGAQDPRRGKRAPRPPLRRRRLPAAASAP-APVPRPSQPRRPGTPEAVASRAVAGL 288
Query: 64 WPSL--GGLRERGRRRLDWRASGLRERSPRVTLG--EAPP 99
P+L GGL E + SG RE + R G +PP
Sbjct: 289 SPALPPGGLEEMA------QGSGGREGALRTPAGGWHSPP 322
>gi|239748149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 42 PPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGR--RRLDWRASGLRERSPRV-----TL 94
PP R+++ HS P ++A P+LGG +ERG A+GL + S RV L
Sbjct: 6 PPRRNQQPHSAPTMAASAAPRAAPALGG-QERGHLGAPAHSAAAGL-QPSYRVVCVEGVL 63
Query: 95 GEAPPRAAAWSP 106
G P R+ A SP
Sbjct: 64 GAEPQRSLARSP 75
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 31.2 bits (69), Expect = 0.18
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 5 QARLKKTAACESAPCVRLHRSGRRLSARAGQ-PGATEPPPYRDRRSHSPPALSAPRRSGR 63
Q L + A P +R R R G+ PG PPP R P
Sbjct: 20 QVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPS---- 75
Query: 64 WPSLGGLR-----ERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSP 106
P+ GGLR GR+R D A+ R RV P AAA +P
Sbjct: 76 -PAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAP 122
>gi|239742047 PREDICTED: hypothetical protein XP_002342399 [Homo
sapiens]
Length = 84
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 42 PPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGR--RRLDWRASGLRERSPRV-----TL 94
PP R+++ HS P ++A P+LGG +ERG A+GL + S RV L
Sbjct: 6 PPRRNQQPHSAPTMAASAAPRAAPALGG-QERGHLGAPAHSAAAGL-QPSYRVVCVEGVL 63
Query: 95 GEAPPRAAAWSP 106
G P R+ A SP
Sbjct: 64 GAEPQRSLARSP 75
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 30.8 bits (68), Expect = 0.24
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 2 RSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRS 61
+ Q R ++++ E R HR R S + + P RDR P+ R
Sbjct: 505 KERQCRQSRSSSKE-----RDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQ 559
Query: 62 GRWPSLGGLRERGRRRLDWRASG-----------------LRERSPRVTLGEAPPRAAA 103
R PS +ER RRR WR+ R RSP G + PRA++
Sbjct: 560 SRSPS----KERDRRR--WRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASS 612
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 21 RLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWP 65
R+ RS RRL + +PG P RS A PR+SGRWP
Sbjct: 114 RVPRSSRRLPPESRRPGG--PAKTHPARS----ACCRPRKSGRWP 152
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 30.8 bits (68), Expect = 0.24
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 24 RSGRRLSARAGQPGATEPPPY------------RDRRSHSPPALSAPRRSGRWPSLGGLR 71
RSG A + G PP RDR+ S + SA RRS R
Sbjct: 525 RSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTR 584
Query: 72 ERGR----RRLDWRASGLRERSPRVTLGEAPPRAAAWSPSS 108
R R RR R S RE+ R +PP A + S SS
Sbjct: 585 RRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSS 625
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 23 HRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRE 72
HR RR R GQ G +E R R SHS + +SG S GG R+
Sbjct: 213 HREHRR---RDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRK 259
Score = 26.2 bits (56), Expect = 5.9
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 2 RSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSP--------- 52
R +A +T + + P S + +A + TEP YR RRS SP
Sbjct: 274 RDSKAHRSRTKSSKEPP------SAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPV 327
Query: 53 ---PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPS 107
+ S R P+ GG RR + R RSP + + R SPS
Sbjct: 328 SHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPS 385
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 23 HRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRE 72
HR RR R GQ G +E R R SHS + +SG S GG R+
Sbjct: 213 HREHRR---RDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRK 259
Score = 26.2 bits (56), Expect = 5.9
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 2 RSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSP--------- 52
R +A +T + + P S + +A + TEP YR RRS SP
Sbjct: 274 RDSKAHRSRTKSSKEPP------SAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPV 327
Query: 53 ---PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPS 107
+ S R P+ GG RR + R RSP + + R SPS
Sbjct: 328 SHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPS 385
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 35 QPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
QPG PPP H PAL A G +L GL G D RASG
Sbjct: 221 QPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGL---GAAHPDLRASG 267
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,840,539
Number of Sequences: 37866
Number of extensions: 296518
Number of successful extensions: 1880
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 1742
Number of HSP's gapped (non-prelim): 272
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.