Guide to the Human Genome
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Name: LOC730198 Sequence: fasta or formatted (224aa) NCBI GI: 113412994
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {224aa} PREDICTED: hypothetical protein
alt mRNA {224aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         28           2
 C cysteine            3.6          8           1
 D aspartate           1.8          4           1
 E glutamate           3.6          8           1
 F phenylalanine       1.8          4           1
 G glycine            12.9         29           2
 H histidine           1.8          4           1
 I isoleucine          4.5         10           2
 K lysine              4.0          9           1
 L leucine             9.4         21           1
 M methionine          1.3          3           1
 N asparagine          3.1          7           1
 P proline            10.3         23           1
 Q glutamine           4.0          9           2
 R arginine           12.1         27           3
 S serine              5.8         13           2
 T threonine           2.2          5           1
 V valine              3.6          8           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730198             1.000   PREDICTED: hypothetical protein 
LOC730198             1.000   PREDICTED: hypothetical protein 
LOC100287450          0.025   PREDICTED: hypothetical protein XP_002343550 
LOC100287417          0.025   PREDICTED: hypothetical protein XP_002343549 
LOC100287374          0.025   PREDICTED: hypothetical protein XP_002343548 
TESSP1                0.025   testis-specific serine protease 1 
RBM15B                0.023   RNA binding motif protein 15B 
LOC100129463          0.023   PREDICTED: hypothetical protein 
LOC100129463          0.023   PREDICTED: hypothetical protein 
LOC100129463          0.023   PREDICTED: hypothetical protein 
LOC100129463          0.023   PREDICTED: hypothetical protein 
LOC147670             0.021   PREDICTED: hypothetical protein LOC147670 
LOC100293975          0.021   PREDICTED: hypothetical protein 
LOC100293695          0.021   PREDICTED: hypothetical protein 
LOC100292934          0.021   PREDICTED: hypothetical protein 
LOC147670             0.021   PREDICTED: hypothetical protein LOC147670 
LOC100290812          0.021   PREDICTED: hypothetical protein XP_002347678 
LOC100288294          0.021   PREDICTED: hypothetical protein 
LOC100290359          0.021   PREDICTED: hypothetical protein XP_002346414 
LOC147670             0.021   PREDICTED: hypothetical protein LOC147670 
LOC100288205          0.021   PREDICTED: hypothetical protein XP_002343496 
LOC100288294          0.021   PREDICTED: hypothetical protein XP_002342927 
LOC100287202          0.021   PREDICTED: hypothetical protein XP_002342114 
LOC728767             0.018   PREDICTED: hypothetical protein 
LOC728767             0.018   PREDICTED: hypothetical protein 
LOC728650             0.018   PREDICTED: hypothetical protein 
LOC100133305          0.018   PREDICTED: hypothetical protein 
LOC100133305          0.018   PREDICTED: hypothetical protein 
SCRT1                 0.018   scratch 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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