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Search of human proteins with 117938270
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117938270 jumpy isoform 2 [Homo sapiens]
(650 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117938270 jumpy isoform 2 [Homo sapiens] 1317 0.0
gi|117938272 jumpy isoform 1 [Homo sapiens] 1184 0.0
gi|117938274 jumpy isoform 3 [Homo sapiens] 981 0.0
gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens] 49 2e-05
gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens] 49 2e-05
gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens] 49 2e-05
gi|217272865 myotubularin related protein 4 [Homo sapiens] 47 4e-05
gi|4557896 myotubularin [Homo sapiens] 45 3e-04
gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens] 40 0.009
gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens] 40 0.009
gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens] 40 0.009
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 37 0.044
gi|47716512 mex-3 homolog B [Homo sapiens] 37 0.044
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.044
gi|28872761 myotubularin-related protein 1 [Homo sapiens] 37 0.044
gi|134142348 myotubularin related protein 6 [Homo sapiens] 37 0.057
gi|225543474 myotubularin related protein 7 [Homo sapiens] 37 0.074
gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2... 33 0.63
gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1... 33 0.63
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 33 1.1
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 33 1.1
gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens] 32 1.4
gi|41281462 autophagy-related protein 13 isoform 2 [Homo sapiens] 32 1.4
gi|102469037 jun D proto-oncogene [Homo sapiens] 32 1.8
gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens] 32 1.8
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 32 1.8
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 32 1.8
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 32 2.4
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 32 2.4
gi|21361759 myotubularin related protein 8 [Homo sapiens] 32 2.4
>gi|117938270 jumpy isoform 2 [Homo sapiens]
Length = 650
Score = 1317 bits (3409), Expect = 0.0
Identities = 650/650 (100%), Positives = 650/650 (100%)
Query: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
Sbjct: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
Query: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
Sbjct: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
Query: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
Sbjct: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
Query: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
Sbjct: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
Query: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
Sbjct: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
Query: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
Sbjct: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
Query: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
Sbjct: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
Query: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK
Sbjct: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSV 540
SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSV
Sbjct: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSV 540
Query: 541 DHPLPGSSLSTDYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRETR 600
DHPLPGSSLSTDYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRETR
Sbjct: 541 DHPLPGSSLSTDYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRETR 600
Query: 601 LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 650
LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
Sbjct: 601 LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 650
>gi|117938272 jumpy isoform 1 [Homo sapiens]
Length = 598
Score = 1184 bits (3064), Expect = 0.0
Identities = 598/650 (92%), Positives = 598/650 (92%), Gaps = 52/650 (8%)
Query: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
Sbjct: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
Query: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
Sbjct: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
Query: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
Sbjct: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
Query: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
Sbjct: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
Query: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
Sbjct: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
Query: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
Sbjct: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
Query: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
Sbjct: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
Query: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK
Sbjct: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK 480
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSV 540
SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPR
Sbjct: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPR-- 538
Query: 541 DHPLPGSSLSTDYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRETR 600
LAALSDRETR
Sbjct: 539 --------------------------------------------------LAALSDRETR 548
Query: 601 LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 650
LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
Sbjct: 549 LQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 598
>gi|117938274 jumpy isoform 3 [Homo sapiens]
Length = 538
Score = 981 bits (2535), Expect = 0.0
Identities = 478/478 (100%), Positives = 478/478 (100%)
Query: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
Sbjct: 1 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR 60
Query: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
Sbjct: 61 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS 120
Query: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
Sbjct: 121 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE 180
Query: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
Sbjct: 181 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA 240
Query: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
Sbjct: 241 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC 300
Query: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
Sbjct: 301 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP 360
Query: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
Sbjct: 361 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD 420
Query: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAW 478
GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAW
Sbjct: 421 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAW 478
Score = 113 bits (282), Expect = 6e-25
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 591 LAALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 650
LAALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
Sbjct: 479 LAALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL 538
>gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens]
Length = 1161
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 311 LKLLLSLVNS--DDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTV 368
LK L +V++ D +LVHC GWDRTP ++L +L L+ + E + V
Sbjct: 392 LKSALLVVHAVDQDQRPVLVHCSDGWDRTPQIVALAKL------LLDPYYRTIEGFQVLV 445
Query: 369 AYDWFLFGHMLVDRLSKGE 387
+W FGH DR GE
Sbjct: 446 EMEWLDFGHKFADRCGHGE 464
>gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens]
Length = 1170
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 311 LKLLLSLVNS--DDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTV 368
LK L +V++ D +LVHC GWDRTP ++L +L L+ + E + V
Sbjct: 392 LKSALLVVHAVDQDQRPVLVHCSDGWDRTPQIVALAKL------LLDPYYRTIEGFQVLV 445
Query: 369 AYDWFLFGHMLVDRLSKGE 387
+W FGH DR GE
Sbjct: 446 EMEWLDFGHKFADRCGHGE 464
>gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens]
Length = 1198
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 311 LKLLLSLVNS--DDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTV 368
LK L +V++ D +LVHC GWDRTP ++L +L L+ + E + V
Sbjct: 392 LKSALLVVHAVDQDQRPVLVHCSDGWDRTPQIVALAKL------LLDPYYRTIEGFQVLV 445
Query: 369 AYDWFLFGHMLVDRLSKGE 387
+W FGH DR GE
Sbjct: 446 EMEWLDFGHKFADRCGHGE 464
>gi|217272865 myotubularin related protein 4 [Homo sapiens]
Length = 1195
Score = 47.4 bits (111), Expect = 4e-05
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 304 VQQTQNYLKLLLSLVNSDDDSG--LLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPT 361
+Q LK + + N+ D G +LVHC GWDRTP ++L ++ L+ +
Sbjct: 379 LQHLSVMLKAAVLVANTVDREGRPVLVHCSDGWDRTPQIVALAKI------LLDPYYRTL 432
Query: 362 EILYLTVAYDWFLFGHMLVDRLSKGEEI 389
E + V DW FGH DR E +
Sbjct: 433 EGFQVLVESDWLDFGHKFGDRCGHQENV 460
>gi|4557896 myotubularin [Homo sapiens]
Length = 603
Score = 44.7 bits (104), Expect = 3e-04
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 320 SDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHML 379
S S +LVHC GWDRT SL L L + S++ EIL V +W FGH
Sbjct: 365 SSGKSSVLVHCSDGWDRTAQLTSLAMLML---DSFYRSIEGFEIL---VQKEWISFGHKF 418
Query: 380 VDRLSKGEE 388
R+ G++
Sbjct: 419 ASRIGHGDK 427
>gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens]
Length = 643
Score = 39.7 bits (91), Expect = 0.009
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L DG T ++ E+L V +W FGH R+
Sbjct: 411 TSVVVHCSDGWDRTAQLTSLAMLML--DGYYRT-IRGFEVL---VEKEWLSFGHRFQLRV 464
Query: 384 SKGEE 388
G++
Sbjct: 465 GHGDK 469
>gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens]
Length = 571
Score = 39.7 bits (91), Expect = 0.009
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L DG T ++ E+L V +W FGH R+
Sbjct: 339 TSVVVHCSDGWDRTAQLTSLAMLML--DGYYRT-IRGFEVL---VEKEWLSFGHRFQLRV 392
Query: 384 SKGEE 388
G++
Sbjct: 393 GHGDK 397
>gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens]
Length = 571
Score = 39.7 bits (91), Expect = 0.009
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L DG T ++ E+L V +W FGH R+
Sbjct: 339 TSVVVHCSDGWDRTAQLTSLAMLML--DGYYRT-IRGFEVL---VEKEWLSFGHRFQLRV 392
Query: 384 SKGEE 388
G++
Sbjct: 393 GHGDK 397
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 37.4 bits (85), Expect = 0.044
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 499 DRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSVDHPLPGSSLSTDYGSWQM 558
D S + ++ ++ +S ++NF + GS+PL PL G + S+D SW M
Sbjct: 418 DIFTSPKRISGPECTTPKASTSANNFTKSGSTPL----------PLSGGTSSSD-NSWTM 466
Query: 559 VTGCGSIQERAVLHTDSSLPFSFP 582
+ +A L T S++P +FP
Sbjct: 467 DASIDEVVRKAKLGTPSNMPPNFP 490
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 37.4 bits (85), Expect = 0.044
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSS--SNHSDNFFRMGSSPLEVPKPR 538
S S P S LW++P PS P ++ + R+ SSSS S +D++F G+S R
Sbjct: 256 SGGSGPGS-LWSKPTPSITPTPGRKPFSSYRNDSSSSLGSASTDSYFGGGTSSSAAATQR 314
Query: 539 SVDHPLPGSSLS 550
D+ P +LS
Sbjct: 315 LADYSPPSPALS 326
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.4 bits (85), Expect = 0.044
Identities = 29/88 (32%), Positives = 37/88 (42%)
Query: 463 EAVELVPAGAPTQAAWRKSHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSD 522
EAV PT A ++ SSS S + S S + + SSSSSSS+ S
Sbjct: 2588 EAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Query: 523 NFFRMGSSPLEVPKPRSVDHPLPGSSLS 550
+ P +PKP S P PG S
Sbjct: 2648 SPSPAKPGPQALPKPASPKKPPPGERRS 2675
Score = 30.8 bits (68), Expect = 4.1
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 425 LEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRKSHSS 484
L + C+ +++R + S ++ + S + + +++ P+ +P + R S
Sbjct: 1505 LNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQE---RSESDS 1561
Query: 485 SPQSVLWNRPQPSEDRLPSQQGLAEARSSSS----SSSNHSDNFFRMGSSPLEVPKPRSV 540
SP S ++ R P +Q +RS SS S S S R GSSP KPR+
Sbjct: 1562 SPDS-------KAKTRTPLRQ---RSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAA 1611
Query: 541 DHPLPGSSLSTD 552
GS S +
Sbjct: 1612 PRAQSGSDSSPE 1623
>gi|28872761 myotubularin-related protein 1 [Homo sapiens]
Length = 665
Score = 37.4 bits (85), Expect = 0.044
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 324 SGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRL 383
+ ++VHC GWDRT SL L L + ++K E L V +W FGH R+
Sbjct: 432 TSVVVHCSDGWDRTAQLTSLAMLML---DSYYRTIKGFETL---VEKEWISFGHRFALRV 485
Query: 384 SKGEE 388
G +
Sbjct: 486 GHGND 490
>gi|134142348 myotubularin related protein 6 [Homo sapiens]
Length = 621
Score = 37.0 bits (84), Expect = 0.057
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 322 DDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVD 381
+++ +LVHC GWDRT SL L L+ + + + + + DW FGH +
Sbjct: 328 ENASVLVHCSDGWDRTSQVCSLGSL------LLDSYYRTIKGFMVLIEKDWISFGHKFSE 381
Query: 382 R 382
R
Sbjct: 382 R 382
>gi|225543474 myotubularin related protein 7 [Homo sapiens]
Length = 660
Score = 36.6 bits (83), Expect = 0.074
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 320 SDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGH 377
S++ + +LVHC GWDRT S+ L L+ + + + + DW FGH
Sbjct: 328 SEEGASVLVHCSDGWDRTAQVCSVASL------LLDPHYRTLKGFMVLIEKDWISFGH 379
>gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2
[Homo sapiens]
Length = 659
Score = 33.5 bits (75), Expect = 0.63
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 AGARAAAAAASAGSSASSGNQPPQELGLGE---LLEEFSRTQYRAKDGSGTGGSKVERI 57
A A AAAAAA+AG SG PP L GE E F+R A G G+G + R+
Sbjct: 6 AAAAAAAAAAAAGGGCGSG-PPPLLLSEGEQQCYSELFARCAGAAGGGPGSGPPEAARV 63
>gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1
[Homo sapiens]
Length = 660
Score = 33.5 bits (75), Expect = 0.63
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 AGARAAAAAASAGSSASSGNQPPQELGLGE---LLEEFSRTQYRAKDGSGTGGSKVERI 57
A A AAAAAA+AG SG PP L GE E F+R A G G+G + R+
Sbjct: 6 AAAAAAAAAAAAGGGCGSG-PPPLLLSEGEQQCYSELFARCAGAAGGGPGSGPPEAARV 63
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 438 STTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRKSHSSS------PQSVLW 491
STTS S+ S + SSP A+G+ T + +G +++ S S P S
Sbjct: 339 STTSGHSEKSTIFHSSPDASGT-TPSSAHSTTSGVSEESSTSHSQPGSTHTTAFPDSTTT 397
Query: 492 NRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSVDHPLPGSSLST 551
+ S QG EA ++ S + ++P+EV + H P S+ +T
Sbjct: 398 SGLSQEPTTSHSSQGSTEATLDTTPSPPGTT------AAPVEV---STTYHSRPSSTPTT 448
Query: 552 DYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRET 599
+ + T G +E +H SS + LP S A LS++ T
Sbjct: 449 HFSA--SSTTLGRSEESTTVH--SSPGSTETTALPGSTTTAGLSEKST 492
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 438 STTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRKSHSSS------PQSVLW 491
STTS S+ S + SSP A+G+ T + +G +++ S S P S
Sbjct: 233 STTSGHSEKSTIFHSSPDASGT-TPSSAHSTTSGVSEESSTSHSQPGSTHTTAFPDSTTT 291
Query: 492 NRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSVDHPLPGSSLST 551
+ S QG EA ++ S + ++P+EV + H P S+ +T
Sbjct: 292 SGLSQEPTTSHSSQGSTEATLDTTPSPPGTT------AAPVEV---STTYHSRPSSTPTT 342
Query: 552 DYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRET 599
+ + T G +E +H SS + LP S A LS++ T
Sbjct: 343 HFSA--SSTTLGRSEESTTVH--SSPGSTETTALPGSTTTAGLSEKST 386
>gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens]
Length = 517
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 492 NRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKP----------RSVD 541
N P E P Q L SS SS N D+F + P R
Sbjct: 412 NPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQ 471
Query: 542 HPLPGSSLSTDYGSWQMVTGCGSIQERAVLH 572
+P SSLS D G+ M S+ E+ +H
Sbjct: 472 NPPQLSSLSIDIGAQSMAEDLDSLPEKLAVH 502
>gi|41281462 autophagy-related protein 13 isoform 2 [Homo sapiens]
Length = 480
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 492 NRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKP----------RSVD 541
N P E P Q L SS SS N D+F + P R
Sbjct: 375 NPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQ 434
Query: 542 HPLPGSSLSTDYGSWQMVTGCGSIQERAVLH 572
+P SSLS D G+ M S+ E+ +H
Sbjct: 435 NPPQLSSLSIDIGAQSMAEDLDSLPEKLAVH 465
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 1.8
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 2 AGARAAAAAASAG--SSASSGNQPPQELGLGELLEE---FSRTQYRAKDGSGTGGS 52
AGA AAAAAA+AG S ++G+ PP EL E ++ A G GG+
Sbjct: 155 AGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPVYANLSSYAGGAGGAGGA 210
>gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens]
Length = 2002
Score = 32.0 bits (71), Expect = 1.8
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 483 SSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSVDH 542
S PQ + PQP + + P QQ ++ S +S + S GS+ + +P V
Sbjct: 1525 SQQPQPLQKQPPQPQQQQRPQQQQPHHPQTESVNSYSAS------GSTNPYMRRPNPVS- 1577
Query: 543 PLPGSSLSTD-YGSWQMVTGCGSIQERAVLHTDSSLPFS 580
P P SS ++D YGS + + + A + +SS P +
Sbjct: 1578 PYPNSSHTSDIYGSTSPMNFYSTSSQAAGSYLNSSNPMN 1616
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 32.0 bits (71), Expect = 1.8
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 452 SSPGATGSFTYEAVELVPAGAPTQAAWRK-SHSSSPQSVLWNRPQPSEDRLPSQQGLAEA 510
SSP + G + P G P + +RK +HS SV P+P E R Q G
Sbjct: 649 SSPSSPG-----LGRVAPRGHPRHSHYRKDTHSPLDSSVTKQVPRPPERRRACQDGSVPR 703
Query: 511 RSSSSSSS 518
S SSSS+
Sbjct: 704 YSGSSSST 711
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 469 PAGAPTQAAWRKSHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMG 528
PAG PT A + S S++P P P Q+ L E SSS +
Sbjct: 297 PAGRPTPAPRKASESTTPAP-----PTPRPRSSLQQENLVEQAGSSSLVNGRLHE----- 346
Query: 529 SSPLEVPKPRSVDHPLPGS 547
L VPKPR P G+
Sbjct: 347 ---LPVPKPRGTPKPSEGT 362
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 31.6 bits (70), Expect = 2.4
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 481 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSV 540
S SS S +RP + +R +Q E SS S S + G KP+
Sbjct: 599 SSRSSEMSSSKDRPLSARERRRLKQSQEEMSSSGPSVRKASLSVAGPG-------KPQEE 651
Query: 541 DHPLPGSSLSTDYGSWQMVTGCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSD 596
D PLP LS+D C QER +H S DEL +S SD
Sbjct: 652 DQPLPARRLSSD---------CSVTQERKQIHCLSE------DELSSSTSSTDKSD 692
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 31.6 bits (70), Expect = 2.4
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3 GARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVER 56
G AAAAAA+A ++A+ G PP G G + + RA++ +G G + ++R
Sbjct: 39 GNAAAAAAAAAAAAAAPGPTPPAPPGPG--TDAQAAGAERAEEAAGPGAAALQR 90
>gi|21361759 myotubularin related protein 8 [Homo sapiens]
Length = 704
Score = 31.6 bits (70), Expect = 2.4
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 322 DDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVD 381
+ + +LVHC GWDRT S+ A L+ + + L + + +W GH
Sbjct: 330 EKASVLVHCSDGWDRTAQVCSV------ASILLDPFYRTFKGLMILIEKEWISMGHKFSQ 383
Query: 382 R 382
R
Sbjct: 384 R 384
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,277,142
Number of Sequences: 37866
Number of extensions: 1261339
Number of successful extensions: 4949
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 4825
Number of HSP's gapped (non-prelim): 123
length of query: 650
length of database: 18,247,518
effective HSP length: 109
effective length of query: 541
effective length of database: 14,120,124
effective search space: 7638987084
effective search space used: 7638987084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.