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Search of human proteins with 117553617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117553617 hypothetical protein LOC440087 [Homo sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117553617 hypothetical protein LOC440087 [Homo sapiens] 428 e-120
gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo sap... 35 0.040
gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo sap... 35 0.040
gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo sap... 35 0.040
gi|157389009 hypothetical protein LOC144608 [Homo sapiens] 35 0.040
gi|7706353 vacuolar protein sorting 24 isoform 1 [Homo sapiens] 32 0.34
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [... 32 0.44
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [... 32 0.44
gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3 [... 32 0.44
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 32 0.44
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 32 0.44
gi|4505225 menage a trois 1 (CAK assembly factor) [Homo sapiens] 32 0.57
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 32 0.57
gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... 31 0.75
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 31 0.75
gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens] 31 0.75
gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens] 31 0.75
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 30 1.3
gi|32698688 citron [Homo sapiens] 30 1.7
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 30 1.7
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 30 1.7
gi|71061468 centromere protein E [Homo sapiens] 30 1.7
gi|156104908 myosin heavy chain 6 [Homo sapiens] 30 1.7
gi|27734761 non-SMC element 2, MMS21 homolog [Homo sapiens] 30 1.7
gi|55770834 centromere protein F [Homo sapiens] 30 1.7
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 30 2.2
gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens] 30 2.2
gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens] 30 2.2
gi|31791053 zinc finger protein 804B [Homo sapiens] 30 2.2
gi|239756135 PREDICTED: similar to AGAP002076-PA [Homo sapiens] 29 2.8
>gi|117553617 hypothetical protein LOC440087 [Homo sapiens]
Length = 225
Score = 428 bits (1101), Expect = e-120
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MAQSDFLYPENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDG 60
MAQSDFLYPENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDG
Sbjct: 1 MAQSDFLYPENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDG 60
Query: 61 TIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISVI 120
TIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISVI
Sbjct: 61 TIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISVI 120
Query: 121 LGEATSAASAVAVKLVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAIL 180
LGEATSAASAVAVKLVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAIL
Sbjct: 121 LGEATSAASAVAVKLVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAIL 180
Query: 181 GAVEKTQLQAAIKSYEKHLVEFKSASEKYNHAITEVINTVKHQMK 225
GAVEKTQLQAAIKSYEKHLVEFKSASEKYNHAITEVINTVKHQMK
Sbjct: 181 GAVEKTQLQAAIKSYEKHLVEFKSASEKYNHAITEVINTVKHQMK 225
>gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 35.4 bits (80), Expect = 0.040
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 29 LSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDL---------IIQAIMKIQKE 79
++D D N + E LN HL C + ++ K DG K N L I ++ + Q++
Sbjct: 193 ITDVLDQKNYVEE-LNRHLSCTVGDLQTKIDGLEKTNSKLQEELSAATDRICSLQEEQQQ 251
Query: 80 LQKVDEALKDKLEPTLYRKLQDIK-EKETDK 109
L++ +E ++++ E ++ QD K E ET K
Sbjct: 252 LREQNELIRERSEKSVEITKQDTKVELETYK 282
>gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 35.4 bits (80), Expect = 0.040
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 29 LSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDL---------IIQAIMKIQKE 79
++D D N + E LN HL C + ++ K DG K N L I ++ + Q++
Sbjct: 193 ITDVLDQKNYVEE-LNRHLSCTVGDLQTKIDGLEKTNSKLQEELSAATDRICSLQEEQQQ 251
Query: 80 LQKVDEALKDKLEPTLYRKLQDIK-EKETDK 109
L++ +E ++++ E ++ QD K E ET K
Sbjct: 252 LREQNELIRERSEKSVEITKQDTKVELETYK 282
>gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo
sapiens]
Length = 708
Score = 35.4 bits (80), Expect = 0.040
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 29 LSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDL---------IIQAIMKIQKE 79
++D D N + E LN HL C + ++ K DG K N L I ++ + Q++
Sbjct: 301 ITDVLDQKNYVEE-LNRHLSCTVGDLQTKIDGLEKTNSKLQEELSAATDRICSLQEEQQQ 359
Query: 80 LQKVDEALKDKLEPTLYRKLQDIK-EKETDK 109
L++ +E ++++ E ++ QD K E ET K
Sbjct: 360 LREQNELIRERSEKSVEITKQDTKVELETYK 390
>gi|157389009 hypothetical protein LOC144608 [Homo sapiens]
Length = 245
Score = 35.4 bits (80), Expect = 0.040
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 10 ENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLI 69
E+ K +E + + + + D V N LTE+ + + ++ + +K + IK+
Sbjct: 4 ESEKDKERLIQAAKMFFFHVQDLASVINTLTELFSRSMNTQILLMAVKNNSYIKD----F 59
Query: 70 IQAIMKIQKELQKVDEALKDKLEP------------TLYRKLQDIKE-----KETDKIAI 112
+ ++KI KE+Q V +A DK++ ++ +K +++E KE K A
Sbjct: 60 FEQMLKIFKEMQSVVDARHDKIQKESLCSKVAMAMCSVVQKSTNVEELHQSAKEVFKSAH 119
Query: 113 VQKVISV-----ILGEATSAAS 129
+ISV ILG S+ S
Sbjct: 120 TPVIISVLNSSNILGSLESSLS 141
>gi|7706353 vacuolar protein sorting 24 isoform 1 [Homo sapiens]
Length = 222
Score = 32.3 bits (72), Expect = 0.34
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 67 DLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISVILGEATS 126
+L+ + +KI+KE++ VD ++D + R+ + +K D QK + ++L +
Sbjct: 14 ELVNEWSLKIRKEMRVVDRQIRD-----IQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 68
Query: 127 AASAVAVKLVGS-----NVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAILG 181
+ KL S +V G+ N+L + ++ SL S V ++A+
Sbjct: 69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVL--RVAGSLQKSTEV----------MKAMQS 116
Query: 182 AVEKTQLQAAIKSYEKHLVE 201
V+ ++QA ++ K +++
Sbjct: 117 LVKIPEIQATMRELSKEMMK 136
>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
[Homo sapiens]
Length = 871
Score = 32.0 bits (71), Expect = 0.44
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 16 EEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMK 75
EEV RLHQ+ L L+ + + L L+S+E +R G KE + +A +
Sbjct: 258 EEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAEL- 316
Query: 76 IQKELQKVDEALK 88
++K+L K E L+
Sbjct: 317 LRKQLSKTQEDLE 329
>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
[Homo sapiens]
Length = 835
Score = 32.0 bits (71), Expect = 0.44
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 16 EEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMK 75
EEV RLHQ+ L L+ + + L L+S+E +R G KE + +A +
Sbjct: 222 EEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAEL- 280
Query: 76 IQKELQKVDEALK 88
++K+L K E L+
Sbjct: 281 LRKQLSKTQEDLE 293
>gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3
[Homo sapiens]
Length = 782
Score = 32.0 bits (71), Expect = 0.44
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 16 EEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMK 75
EEV RLHQ+ L L+ + + L L+S+E +R G KE + +A +
Sbjct: 169 EEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAEL- 227
Query: 76 IQKELQKVDEALK 88
++K+L K E L+
Sbjct: 228 LRKQLSKTQEDLE 240
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 32.0 bits (71), Expect = 0.44
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 102 IKEKETDKIAIVQKVISVILGEATSAASAVAVKLVGSNVTTGIINKLVTVLAQIGASLLG 161
I E T ++I + +V+ G +A S +VK+ GS V L T SLLG
Sbjct: 756 INEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLG 815
Query: 162 SIGVA---VLGL 170
+ GVA V+GL
Sbjct: 816 TQGVAPGPVIGL 827
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 32.0 bits (71), Expect = 0.44
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 102 IKEKETDKIAIVQKVISVILGEATSAASAVAVKLVGSNVTTGIINKLVTVLAQIGASLLG 161
I E T ++I + +V+ G +A S +VK+ GS V L T SLLG
Sbjct: 771 INEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLG 830
Query: 162 SIGVA---VLGL 170
+ GVA V+GL
Sbjct: 831 TQGVAPGPVIGL 842
>gi|4505225 menage a trois 1 (CAK assembly factor) [Homo sapiens]
Length = 309
Score = 31.6 bits (70), Expect = 0.57
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 42 VLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQD 101
V N+ L + + K + KEN D+I + +K+ +E ++++EAL+ + + R+L
Sbjct: 106 VFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFI 165
Query: 102 IKEKETDKIAIVQKVISVILGEATSAASAVAVKL 135
KE++ +I + +K L E S+ VA+ L
Sbjct: 166 QKEEQLQQI-LKRKNKQAFLDELESSDLPVALLL 198
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 31.6 bits (70), Expect = 0.57
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 18 VNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKR--------DGTIKENCDLI 69
+ L +L +C ++ +K E+L M + + E+K+ D TI+E+ +
Sbjct: 1104 IKDLTAELREC---KMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEM 1160
Query: 70 IQAIMKIQKELQKVDEALKD--KLEPTLYRKLQDIKEKETDK 109
Q I+K++ L+K + LK+ K +L KLQ+ KE+ +K
Sbjct: 1161 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK 1202
Score = 28.1 bits (61), Expect = 6.3
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 13 KRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMK--RDGTIKENCDLII 70
K+ EEV L ++L + S T++ +L L + ++ + R+G +++ +
Sbjct: 878 KKSEEVYCLQKEL-KIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLE 936
Query: 71 QAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIV-QKVISVILGEATSAAS 129
+ + K+++ELQK E+ +KL RK+++ E + + QKVI E T A
Sbjct: 937 KQVSKLEQELQKQRESSAEKL-----RKMEEKCESAAHEADLKRQKVI-----ELTGTAR 986
Query: 130 AVAVKL 135
V +++
Sbjct: 987 QVKIEM 992
>gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I
[Homo sapiens]
Length = 925
Score = 31.2 bits (69), Expect = 0.75
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 49 CRL-ASIEMKRDGTIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQD 101
C+L AS++ T+K N + + Q + K QK +KV+ + DK + + + ++D
Sbjct: 428 CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 31.2 bits (69), Expect = 0.75
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 13 KRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQA 72
K ++ + HQQ LD L D N L ++ A +E + D ++
Sbjct: 998 KEKKSLQEAHQQTLDDLQVEEDKVNGLIKIN--------AKLEQQTDD---------LEG 1040
Query: 73 IMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKV 116
++ +K+L+ E K KLE L + I + E DK I +K+
Sbjct: 1041 SLEQEKKLRADLERAKRKLEGDLKMSQESIMDLENDKQQIEEKL 1084
>gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens]
Length = 822
Score = 31.2 bits (69), Expect = 0.75
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 170 LGIDMIVRAILGAVEKTQLQAAIKSYEKHLVEFKSASEKYNHAITEVINTVK 221
+G+ + A + V KT+L+ SY + + E SA EKY A+ + T K
Sbjct: 115 IGVHQQIEAEMIKVTKTELEKLKCSYRQLIKEMNSAKEKYKEALAKGKETEK 166
>gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens]
Length = 245
Score = 31.2 bits (69), Expect = 0.75
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 175 IVRAILGAVEKTQLQAAIKS-YEKHLVEFKSASEKYNHAITEVINTV 220
+V AI+G V + +++ + K+ YEK L ++ S + +HA+ ++ NT+
Sbjct: 105 LVAAIVGFVFRHEIKNSFKNNYEKALKQYNSTGDYRSHAVDKIQNTL 151
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 30.4 bits (67), Expect = 1.3
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 3 QSDFLYPENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIE--MKRDG 60
+ D E K E+++ H++ D LS S + +LT+++N + IE +R
Sbjct: 770 KKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINK----KEIFIEKLKERSS 825
Query: 61 TIKENCDLIIQAIMK---IQKELQKVDEALKDKLEPT--LYRKLQDIKEKET 107
++E D QA+ K +++ +++ D +L E L +L+ ++E+++
Sbjct: 826 KLQEELDKYSQALRKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQS 877
>gi|32698688 citron [Homo sapiens]
Length = 2027
Score = 30.0 bits (66), Expect = 1.7
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 13 KRREEVNRLHQQL--LDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLII 70
K +E+ RLH+++ ++ + +V K +E L LA+ + ++K + +
Sbjct: 467 KMEQEMTRLHRRVSEVEAVLSQKEVELKASETQRSLLEQDLATY-ITECSSLKRSLE--- 522
Query: 71 QAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKE 106
QA M++ +E K + L D E + RKLQ+IKE+E
Sbjct: 523 QARMEVSQEDDKALQLLHDIREQS--RKLQEIKEQE 556
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 30.0 bits (66), Expect = 1.7
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 13 KRREEVNRLHQQLLDCLSDSFDVTNKLT--EVLNMHLGCRLASIEMKRDGTIKENCDLII 70
K ++ V +LHQ L + + S + L E +G AS+ K + + + +
Sbjct: 1131 KEQQTVTKLHQLLENQKNSSVPLAEHLQIKEAFEKEVGIIKASLREKEEESQNK-----M 1185
Query: 71 QAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISV 119
+ + K+Q E+Q +ALK KLE R++ D+ + + K + ++ S+
Sbjct: 1186 EEVSKLQSEVQNTKQALK-KLET---REVVDLSKYKATKSDLETQISSL 1230
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 30.0 bits (66), Expect = 1.7
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 13 KRREEVNRLHQQLLDCLSDSFDVTNKLT--EVLNMHLGCRLASIEMKRDGTIKENCDLII 70
K ++ V +LHQ L + + S + L E +G AS+ K + + + +
Sbjct: 1144 KEQQTVTKLHQLLENQKNSSVPLAEHLQIKEAFEKEVGIIKASLREKEEESQNK-----M 1198
Query: 71 QAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISV 119
+ + K+Q E+Q +ALK KLE R++ D+ + + K + ++ S+
Sbjct: 1199 EEVSKLQSEVQNTKQALK-KLET---REVVDLSKYKATKSDLETQISSL 1243
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 50 RLASIEMKRDGTIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDK 109
RL + +KEN I+ ++ ++EL+ LK++ E T+ ++ EKET+
Sbjct: 1449 RLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQ-EETINELRVNLSEKETE- 1506
Query: 110 IAIVQKVISVI 120
I+ +QK + I
Sbjct: 1507 ISTIQKQLEAI 1517
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 30.0 bits (66), Expect = 1.7
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 1 MAQSDFLYPENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDG 60
MA D + + K ++ + HQQ LD L D N L++ +E + D
Sbjct: 984 MAGLDEIIAKLTKEKKALQEAHQQALDDLQVEEDKVNSLSK--------SKVKLEQQVDD 1035
Query: 61 TIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKV 116
++ ++ +K+++ E K KLE L + I + E DK+ + +K+
Sbjct: 1036 ---------LEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLENDKLQLEEKL 1082
>gi|27734761 non-SMC element 2, MMS21 homolog [Homo sapiens]
Length = 247
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 166 AVLGLGIDMIVRAILGAVEKTQLQAAIKSYEKHLVEFKSASEKYNHAITEVINTVKH 222
A + G+D L VE ++ S +K +VEF + + NH + V +T+ H
Sbjct: 32 ACINSGMDTASSVALDLVESQTEVSSEYSMDKAMVEFATLDRQLNHYVKAVQSTINH 88
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 30.0 bits (66), Expect = 1.7
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 10 ENPKRREEVNRLHQQL--LDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCD 67
EN +R +++ +Q+L LD + +V T++ M ++ +++ + KEN
Sbjct: 2157 ENLERELQMSEENQELVILDAENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLT 2216
Query: 68 LIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISVILGEATSA 127
IQ EL K+ + K LE ++Q IKE+ + ++Q + L EA +A
Sbjct: 2217 KQIQEKQGQLSELDKLLSSFKSLLEEKEQAEIQ-IKEESKTAVEMLQNQLKE-LNEAVAA 2274
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 32 SFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAI------MKIQKELQKVDE 85
+F + ++ E+LN+H ++SI+ + +++ + + + + E +
Sbjct: 2943 AFSIISEGCEILNIHAPAFISSIDQEESEQMQDKLEYLEEKASFKTIPLPDDSETVACHK 3002
Query: 86 ALKDKLEPTLYRKLQDIKEKETDK 109
LK +LE L++ K+KET K
Sbjct: 3003 TLKSRLEDEKVTPLKENKQKETHK 3026
>gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens]
Length = 348
Score = 29.6 bits (65), Expect = 2.2
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 29 LSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMKIQKELQKVDEALK 88
++ F + TE + + +++ + +K T E ++ ++E + EALK
Sbjct: 22 VAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALK 81
Query: 89 DKLEPTLYRKLQDIKEKETD--------------KIAIVQKVISVILGEATSAASAVAVK 134
+ L P + + +D+++KE KI + + VI E +
Sbjct: 82 N-LTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIA 140
Query: 135 LVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAILGA-VEKTQLQAA 191
V S +TGI++ + +LA A L SI A +GLGI I + VE T ++A
Sbjct: 141 NVVSG-STGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSA 197
>gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens]
Length = 351
Score = 29.6 bits (65), Expect = 2.2
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 29 LSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMKIQKELQKVDEALK 88
++ F + TE + + +++ + +K T E ++ ++E + EALK
Sbjct: 25 VAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALK 84
Query: 89 DKLEPTLYRKLQDIKEKETD--------------KIAIVQKVISVILGEATSAASAVAVK 134
+ L P + + +D+++KE KI + + VI E +
Sbjct: 85 N-LTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIA 143
Query: 135 LVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAILGA-VEKTQLQAA 191
V S +TGI++ + +LA A L SI A +GLGI I + VE T ++A
Sbjct: 144 NVVSG-STGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSA 200
>gi|31791053 zinc finger protein 804B [Homo sapiens]
Length = 1349
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 22 HQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMKIQKELQ 81
H L+D+ D N L++ + +HL S+ +KRD T KE +I I +
Sbjct: 1010 HTNNFTILADT-DCDNHLSKGI-IHLVTESQSLNIKRDATTKEQSKPLISEIQPFIQSCD 1067
Query: 82 KVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISV 119
V Y + D E + D+I + + +S+
Sbjct: 1068 PVPNEFPGAFPSNKYTGVTDSTETQEDQINLDLQDVSM 1105
>gi|239756135 PREDICTED: similar to AGAP002076-PA [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 2.8
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 126 SAASAVAVKLVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAI 179
+A +A+ V+ VG G+++ + + GA +LG + + V+ +G D RA+
Sbjct: 349 AARAALLVQAVGDGRRRGLVDDAQHIEPRDGACVLGGLALRVVEIGRDRYDRAV 402
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,374,458
Number of Sequences: 37866
Number of extensions: 225178
Number of successful extensions: 1388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 71
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.