Guide to the Human Genome
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Name: VPS24 Sequence: fasta or formatted (222aa) NCBI GI: 7706353
Description:

vacuolar protein sorting 24 isoform 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [156aa] vacuolar protein sorting 24 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         22           2
 C cysteine            0.5          1           1
 D aspartate           4.5         10           2
 E glutamate          15.3         34           6
 F phenylalanine       1.4          3           1
 G glycine             4.1          9           1
 H histidine           0.5          1           1
 I isoleucine          5.4         12           2
 K lysine             10.4         23           2
 L leucine             8.1         18           1
 M methionine          7.7         17           2
 N asparagine          1.4          3           1
 P proline             3.6          8           2
 Q glutamine           4.5         10           1
 R arginine            5.9         13           1
 S serine              6.8         15           1
 T threonine           3.2          7           1
 V valine              6.3         14           2
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 24 isoform 1 
VPS24                 0.678   vacuolar protein sorting 24 isoform 2 
CHMP2B                0.176   chromatin modifying protein 2B 
CHMP2A                0.174   chromatin modifying protein 2A 
CHMP2A                0.174   chromatin modifying protein 2A 
CHMP1B                0.055   chromatin modifying protein 1B 
DNAH1                 0.053   dynein, axonemal, heavy chain 1 
CHMP5                 0.045   chromatin modifying protein 5 
CHMP6                 0.043   chromatin modifying protein 6 
CROCC                 0.040   ciliary rootlet coiled-coil 
CT47A1                0.038   cancer/testis antigen family 47, member A1 
CT47A2                0.038   cancer/testis antigen family 47, member A2 
CT47A3                0.038   cancer/testis antigen family 47, member A3 
CT47A4                0.038   cancer/testis antigen family 47, member A4 
CT47A5                0.038   cancer/testis antigen family 47, member A5 
CT47A6                0.038   cancer/testis antigen family 47, member A6 
CT47A7                0.038   cancer/testis antigen family 47, member A7 
CT47A8                0.038   cancer/testis antigen family 47, member A8 
CT47A9                0.038   cancer/testis antigen family 47, member A9 
CT47A10               0.038   cancer/testis antigen family 47, member A10 
CT47A11               0.038   cancer/testis antigen family 47, member A11 
LOC440243             0.035   PREDICTED: Putative golgin subfamily A member 6-lik...
CHMP4B                0.035   chromatin modifying protein 4B 
LOC283767             0.035   golgi autoantigen, golgin subfamily a-like 
MYH7                  0.033   myosin, heavy chain 7, cardiac muscle, beta 
CHMP4C                0.033   chromatin modifying protein 4C 
MTUS1                 0.033   mitochondrial tumor suppressor 1 isoform 5 
MTUS1                 0.033   mitochondrial tumor suppressor 1 isoform 1 
MTUS1                 0.033   mitochondrial tumor suppressor 1 isoform 2 
MTUS1                 0.033   mitochondrial tumor suppressor 1 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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