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Search of human proteins with 239749253
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749253 PREDICTED: hypothetical protein XP_002346961 [Homo
sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754672 PREDICTED: hypothetical protein XP_002346070 [Homo ... 237 1e-63
gi|239749253 PREDICTED: hypothetical protein XP_002346961 [Homo ... 237 1e-63
gi|239743347 PREDICTED: hypothetical protein XP_002342825 [Homo ... 237 1e-63
gi|239509035 PREDICTED: hypothetical protein [Homo sapiens] 237 1e-63
gi|110611914 progesterone receptor [Homo sapiens] 33 0.049
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 31 0.19
gi|206597541 solute carrier family 39 (metal ion transporter), m... 31 0.24
gi|206597539 solute carrier family 39 (metal ion transporter), m... 31 0.24
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 30 0.54
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 29 0.70
gi|239752671 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239747188 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239741014 PREDICTED: hypothetical protein XP_002342054 [Homo ... 29 0.92
gi|145309328 papilin [Homo sapiens] 29 0.92
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 28 1.2
gi|239750956 PREDICTED: hypothetical protein XP_002347617 [Homo ... 28 1.2
gi|239745362 PREDICTED: hypothetical protein XP_002343447 [Homo ... 28 1.2
gi|46094081 development and differentiation enhancing factor 1 [... 28 1.2
gi|7706194 proline rich 16 [Homo sapiens] 28 1.2
gi|33286444 mastermind-like 2 [Homo sapiens] 28 1.6
gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens] 28 1.6
gi|118918413 MICAL C-terminal like [Homo sapiens] 28 1.6
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 28 2.0
gi|55750053 atrophin-1 [Homo sapiens] 28 2.0
gi|55750041 atrophin-1 [Homo sapiens] 28 2.0
gi|4758250 ephrin B2 [Homo sapiens] 27 2.7
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 27 2.7
>gi|239754672 PREDICTED: hypothetical protein XP_002346070 [Homo
sapiens]
Length = 113
Score = 237 bits (605), Expect = 1e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG
Sbjct: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
Query: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG
Sbjct: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
>gi|239749253 PREDICTED: hypothetical protein XP_002346961 [Homo
sapiens]
Length = 113
Score = 237 bits (605), Expect = 1e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG
Sbjct: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
Query: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG
Sbjct: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
>gi|239743347 PREDICTED: hypothetical protein XP_002342825 [Homo
sapiens]
Length = 113
Score = 237 bits (605), Expect = 1e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG
Sbjct: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
Query: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG
Sbjct: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
>gi|239509035 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 237 bits (605), Expect = 1e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG
Sbjct: 1 MTKFRLRLGIWYTPRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG 60
Query: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG
Sbjct: 61 FSGGSLLGSELLHPNSFQPLRQTLVPHRAPPSWSAAELLPREFEGSGTSVLGG 113
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 33.1 bits (74), Expect = 0.049
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 53 SPHLSAAGFSGGSLLGSELLH---PNSFQPLRQTLVPHRAPPSWSAAELLP 100
SP +S +G G G+ H P P RQ L+P P WS A + P
Sbjct: 162 SPLMSRSGCKVGDSSGTAAAHKVLPRGLSPARQLLLPASESPHWSGAPVKP 212
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 32 PTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGSLLGSELLHP 74
P+P+P L L + G SP S+ +GG+ G+ L HP
Sbjct: 355 PSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHP 397
>gi|206597541 solute carrier family 39 (metal ion transporter),
member 5 [Homo sapiens]
Length = 540
Score = 30.8 bits (68), Expect = 0.24
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 21/88 (23%)
Query: 30 NLPTPDPGLTRELTRPRLPLPGQSPHLSAAGFSG----GSLLGSELLHPNSFQPLRQTLV 85
+LP+P L L PRL P GF G G+L G LLH L+
Sbjct: 224 SLPSPLSLLLLRLLGPRLLRP-------LLGFLGALAVGTLCGDALLH----------LL 266
Query: 86 PHRAPPSWSAAELLPREFEGSGTSVLGG 113
PH + LP + G G SVLGG
Sbjct: 267 PHAQEGRHAGPGGLPEKDLGPGLSVLGG 294
>gi|206597539 solute carrier family 39 (metal ion transporter),
member 5 [Homo sapiens]
Length = 540
Score = 30.8 bits (68), Expect = 0.24
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 21/88 (23%)
Query: 30 NLPTPDPGLTRELTRPRLPLPGQSPHLSAAGFSG----GSLLGSELLHPNSFQPLRQTLV 85
+LP+P L L PRL P GF G G+L G LLH L+
Sbjct: 224 SLPSPLSLLLLRLLGPRLLRP-------LLGFLGALAVGTLCGDALLH----------LL 266
Query: 86 PHRAPPSWSAAELLPREFEGSGTSVLGG 113
PH + LP + G G SVLGG
Sbjct: 267 PHAQEGRHAGPGGLPEKDLGPGLSVLGG 294
>gi|150170729 microtubule associated serine/threonine kinase 3
[Homo sapiens]
Length = 1309
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 17 RSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGSLL 67
R + + N+ + TP P L+R L+ +P G SP S FS S L
Sbjct: 21 RGRGCRSGNRKSLVVGTPSPTLSRPLSPLSVPTAGSSPLDSPRNFSAASAL 71
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 32 PTP-DPGLTRELTRPRLPLPGQSPHLSAAGFSGGS 65
P P D G R L PR P P +S S+ G GGS
Sbjct: 855 PRPLDAGRGRRLGGPRDPAPEKSRASSSGGSGGGS 889
>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 14 PRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGS 65
PR + H ++T + +P P R R PG SPHL A G GS
Sbjct: 443 PRAGGQSSGHPDRT---VTSPRPIPARPRPRTSASRPGPSPHLEATGTHAGS 491
>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 14 PRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGS 65
PR + H ++T + +P P R R PG SPHL A G GS
Sbjct: 443 PRAGGQSSGHPDRT---VTSPRPIPARPRPRTSASRPGPSPHLEATGTHAGS 491
>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 536
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 14 PRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGS 65
PR + H ++T + +P P R R PG SPHL A G GS
Sbjct: 480 PRAGGQSSGHPDRT---VTSPRPIPARPRPRTSASRPGPSPHLEATGTHAGS 528
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 32 PTPDPGLTRELTRPRLPLPGQS-----PHLSAAGFSGGSLLGSELLHPNSFQPLRQTLVP 86
P +P L+ L P L PG+ P SG L +L+ P+ P ++
Sbjct: 885 PPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPLSPIIT 944
Query: 87 HRAPPSWSAAELLPREFEGSGTS 109
APP+ S L F G S
Sbjct: 945 AAAPPALSPLGELEYPFGAKGDS 967
>gi|239752671 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 30 NLPTPDPGLTRELTRPRLPLPGQSPHLSA-------AGFSGGSLLGSEL-LH---PNSFQ 78
N T PGLT+ R PLPG S SA A GSL +L LH ++
Sbjct: 16 NFHTCAPGLTQRHEVARPPLPGSSEDGSATPDTWQLAALPLGSLSSGQLCLHLRGTSTPA 75
Query: 79 PLRQTLVPHRAPPSWSAAELLPR 101
P L P P W A+E+ R
Sbjct: 76 PTCVPLAPKLPPYVWVASEMWGR 98
>gi|239747188 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 30 NLPTPDPGLTRELTRPRLPLPGQSPHLSA-------AGFSGGSLLGSEL-LH---PNSFQ 78
N T PGLT+ R PLPG S SA A GSL +L LH ++
Sbjct: 16 NFHTCAPGLTQRHEVARPPLPGSSEDGSATPDTWQLAALPLGSLSSGQLCLHLRGTSTPA 75
Query: 79 PLRQTLVPHRAPPSWSAAELLPR 101
P L P P W A+E+ R
Sbjct: 76 PTCVPLAPKLPPYVWVASEMWGR 98
>gi|239741014 PREDICTED: hypothetical protein XP_002342054 [Homo
sapiens]
Length = 147
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 30 NLPTPDPGLTRELTRPRLPLPGQSPHLSA-------AGFSGGSLLGSEL-LH---PNSFQ 78
N T PGLT+ R PLPG S SA A GSL +L LH ++
Sbjct: 16 NFHTCAPGLTQRHEVARPPLPGSSEDGSATPDTWQLAALPLGSLSSGQLCLHLRGTSTPA 75
Query: 79 PLRQTLVPHRAPPSWSAAELLPR 101
P L P P W A+E+ R
Sbjct: 76 PTCVPLAPKLPPYVWVASEMWGR 98
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 28.9 bits (63), Expect = 0.92
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 13 TPRGRSKPIKH-SNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAAG-FSGGSLLGS 69
+P G +P +H + P P GL R+ +P PG++PH A G + G LGS
Sbjct: 804 SPAGEQEPSQHRTGAAVQRKPWPSGGLWRQDQQPG---PGEAPHTQAFGEWPWGQELGS 859
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 28.5 bits (62), Expect = 1.2
Identities = 36/117 (30%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 10 IWYTPRGRSKPIKHSN---QTFFNLPTPDPGLTRELTRPRL--PLPGQSPHLSAAGFSGG 64
+ +TPRG P HS +TF + P G L P P P Q P
Sbjct: 1017 VGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTP 1076
Query: 65 SLLGSELLHPNSFQPL-----RQTL---VPHRAPPSWSAAELLPREFEGSGTSVLGG 113
L +L ++ QP QTL PH + S +A L PR GSG S G
Sbjct: 1077 GRLTQDLKLISASQPALPQDGAQTLRRASPHSSGESMAAFPLFPRAGGGSGGSGSSG 1133
>gi|239750956 PREDICTED: hypothetical protein XP_002347617 [Homo
sapiens]
Length = 139
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 32 PTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGSLLGSELLHP 74
P P PG + P PLPG PH+ + LL P
Sbjct: 77 PLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAP 119
>gi|239745362 PREDICTED: hypothetical protein XP_002343447 [Homo
sapiens]
Length = 139
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 32 PTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGSLLGSELLHP 74
P P PG + P PLPG PH+ + LL P
Sbjct: 77 PLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAP 119
>gi|46094081 development and differentiation enhancing factor 1
[Homo sapiens]
Length = 1129
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 32 PTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGSLLGSELLHPNSFQPLRQ 82
P P PG R L+ P PLP P+ A + S N F+ L Q
Sbjct: 828 PPPPPGHKRTLSDPPSPLPHGPPNKGAVPWGNDGGPSSSSKTTNKFEGLSQ 878
>gi|7706194 proline rich 16 [Homo sapiens]
Length = 281
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 27 TFFNLPTPDPGLTRELTRPRLPLPGQ------SPHLSAAGFSGGSLLGSELLHPNSFQPL 80
T +N+ + L E P +P Q +PHL G G + H NSF P+
Sbjct: 199 TRYNIKNREVHLHSEPVHPPGKIPHQGPPLPPTPHLPPFPLENG---GMGISHSNSFPPI 255
Query: 81 RQTLVPHRAPP 91
R VP P
Sbjct: 256 RPATVPPPTAP 266
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 45 PRLPLPGQSPHLSAAGFSGGSLLGSELLHPN------SFQPLRQT---LVPHRAPPSWSA 95
PR P G S + + A F GS+ S+ L PN S P R + + + P+W++
Sbjct: 909 PRPPTLGPSNNNNVATFGAGSVGNSQQLRPNLTHSMASMPPQRTSNVMITSNTTAPNWAS 968
Query: 96 AE 97
E
Sbjct: 969 QE 970
>gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 32 PTPDPGLTRELTRPRLPLPGQSPHLSAAGFSGGSLLGSELLHPNSFQPLRQTLVPHRAPP 91
P P PG + PR P G P L + G + GS+ L P+ P RQ P+ P
Sbjct: 117 PVP-PGFFQPFMSPRYP-GGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGP 174
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 45 PRLPLPGQSPHLSA------AGFSGGSLLGSELLHPNSFQPLRQTLVPHRAPPS 92
P LPLP S H S+ SG + GS + +PL Q H +PP+
Sbjct: 9 PSLPLPSSSSHSSSPPSSSSTSVSGNAPDGSSPPQMTASEPLSQVSRGHPSPPT 62
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 34 PDPGLTRELTRPRLPLPGQSPHLSAAGFSGGSLLGSELLHPNS--FQPLRQTLVPHRAPP 91
P+P + + P + P S++ SGG++ LHPNS F+P +L P+R+ P
Sbjct: 1823 PEPSSSGQRLYPEVFYGSAGP--SSSQISGGAM--DSQLHPNSGGFRPGTPSLHPYRSQP 1878
Query: 92 SWSAAELLPREFEGSGTSVLG 112
+ P SG ++ G
Sbjct: 1879 LYLPPGPAPPSALLSGLALKG 1899
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 30 NLPTPDPGLTRELTRPRLPLPGQ--SPHLSAAGFSGGSLLGSELLHPNSFQPLRQTLVPH 87
N PGL + PLPG SPH G G L P + PH
Sbjct: 312 NASASPPGLGAQ------PLPGHLPSPHAMGQGMGG--------LPPGPEKGPTLAPSPH 357
Query: 88 RAPPSWSAAELLPREFEGSGTS 109
PP+ S+A P F S +S
Sbjct: 358 SLPPASSSAPAPPMRFPYSSSS 379
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 30 NLPTPDPGLTRELTRPRLPLPGQ--SPHLSAAGFSGGSLLGSELLHPNSFQPLRQTLVPH 87
N PGL + PLPG SPH G G L P + PH
Sbjct: 312 NASASPPGLGAQ------PLPGHLPSPHAMGQGMGG--------LPPGPEKGPTLAPSPH 357
Query: 88 RAPPSWSAAELLPREFEGSGTS 109
PP+ S+A P F S +S
Sbjct: 358 SLPPASSSAPAPPMRFPYSSSS 379
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 48 PLPGQSPHLSAAGFSGGSLLGSEL 71
P PG S ++AG SG ++LGSE+
Sbjct: 202 PNPGSSTDGNSAGHSGNNILGSEV 225
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 14 PRGRSKPIKHSNQTFFNLPTPDPGLTRELTRPRLPLPGQSPHLSAA 59
PR RS P + + T F+ P P + +R R PG P S+A
Sbjct: 88 PRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSA 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,706,378
Number of Sequences: 37866
Number of extensions: 300380
Number of successful extensions: 964
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 84
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.