Guide to the Human Genome
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Name: LOC100288107 Sequence: fasta or formatted (113aa) NCBI GI: 239743347
Description:

PREDICTED: hypothetical protein XP_002342825

Not currently referenced in the text

Other entries for this name:
alt mRNA {113aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          5           2
 C cysteine            0.0          0           0
 D aspartate           0.9          1           1
 E glutamate           4.4          5           1
 F phenylalanine       5.3          6           2
 G glycine            10.6         12           2
 H histidine           3.5          4           1
 I isoleucine          1.8          2           1
 K lysine              2.7          3           1
 L leucine            15.0         17           2
 M methionine          0.9          1           1
 N asparagine          2.7          3           1
 P proline            13.3         15           2
 Q glutamine           3.5          4           1
 R arginine            8.8         10           1
 S serine             10.6         12           1
 T threonine           7.1          8           1
 V valine              1.8          2           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342825 
LOC100291676          1.000   PREDICTED: hypothetical protein XP_002346070 
LOC100291498          1.000   PREDICTED: hypothetical protein XP_002346961 
LOC100288107          1.000   PREDICTED: hypothetical protein 
PGR                   0.038   progesterone receptor 
LHX1                  0.028   LIM homeobox protein 1 
SLC39A5               0.028   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.028   solute carrier family 39 (metal ion transporter), m...
MAST3                 0.024   microtubule associated serine/threonine kinase 3 [H...
LOC728503             0.019   PREDICTED: hypothetical protein 
LOC728503             0.019   PREDICTED: hypothetical protein 
LOC728503             0.019   PREDICTED: hypothetical protein 
MLL2                  0.019   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC100293374          0.019   PREDICTED: hypothetical protein 
LOC100287750          0.019   PREDICTED: hypothetical protein 
LOC100287750          0.019   PREDICTED: hypothetical protein XP_002342054 
PAPLN                 0.019   papilin 
HCN4                  0.014   hyperpolarization activated cyclic nucleotide-gated p...
LOC100290470          0.014   PREDICTED: hypothetical protein XP_002347617 
LOC100287301          0.014   PREDICTED: hypothetical protein XP_002343447 
ASAP1                 0.014   development and differentiation enhancing factor 1 [...
PRR16                 0.014   proline rich 16 
MAML2                 0.014   mastermind-like 2 
SSBP2                 0.014   single-stranded DNA binding protein 2 
MICALCL               0.014   MICAL C-terminal like 
BAT2                  0.014   HLA-B associated transcript-2 
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
EFNB2                 0.009   ephrin B2 
LOC100291634          0.009   PREDICTED: hypothetical protein XP_002346062 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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