Guide to the Human Genome
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Name: LOC100290470 Sequence: fasta or formatted (139aa) NCBI GI: 239750956
Description:

PREDICTED: hypothetical protein XP_002347617

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         17           1
 C cysteine            4.3          6           1
 D aspartate           2.2          3           1
 E glutamate           4.3          6           1
 F phenylalanine       5.8          8           2
 G glycine             6.5          9           1
 H histidine           5.0          7           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            13.7         19           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            15.8         22           2
 Q glutamine           1.4          2           1
 R arginine            0.7          1           1
 S serine             10.1         14           1
 T threonine           8.6         12           2
 V valine              2.2          3           1
 W tryptophan          5.8          8           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347617 
LOC100287301          1.000   PREDICTED: hypothetical protein XP_002343447 
LOC100293702          0.038   PREDICTED: hypothetical protein 
LOC100287504          0.038   PREDICTED: hypothetical protein 
LOC100287504          0.038   PREDICTED: hypothetical protein XP_002343166 
LOC100291624          0.038   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.038   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.038   PREDICTED: hypothetical protein XP_002342583 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
SNRPC                 0.035   small nuclear ribonucleoprotein polypeptide C 
CACNA1I               0.035   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.035   calcium channel, voltage-dependent, T type, alpha 1I...
LOC100132670          0.035   PREDICTED: hypothetical protein 
KLF2                  0.035   Kruppel-like factor 
FIP1L1                0.035   FIP1 like 1 isoform 2 
PDCD7                 0.035   programmed cell death 7 
FAM75A6               0.035   hypothetical protein LOC389730 
FAM75A2               0.035   hypothetical protein LOC642265 
LOC100289460          0.035   PREDICTED: hypothetical protein XP_002343919 
FAM75A4               0.035   PREDICTED: family with sequence similarity 75, memb...
FAM75A4               0.035   PREDICTED: family with sequence similarity 75, memb...
FAM75A7               0.035   hypothetical protein LOC26165 
FAM75A3               0.035   hypothetical protein LOC727830 
FAM75A1               0.035   hypothetical protein LOC647060 
FAM75A5               0.035   hypothetical protein LOC727905 
LOC100132670          0.031   PREDICTED: hypothetical protein 
LOC100132263          0.031   PREDICTED: hypothetical protein 
LOC100132351          0.031   PREDICTED: hypothetical protein 
LOC100132427          0.031   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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