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Search of human proteins with 239749201
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749201 PREDICTED: hypothetical protein XP_002346947 [Homo
sapiens]
(76 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754655 PREDICTED: hypothetical protein [Homo sapiens] 162 4e-41
gi|239749201 PREDICTED: hypothetical protein XP_002346947 [Homo ... 162 4e-41
gi|239743281 PREDICTED: hypothetical protein XP_002342784 [Homo ... 162 4e-41
gi|239508964 PREDICTED: similar to FLJ00248 protein [Homo sapiens] 162 4e-41
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 35 0.017
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 35 0.017
gi|32490559 low density lipoprotein receptor-related protein 10 ... 34 0.022
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 33 0.065
gi|210032580 SET domain containing 1B [Homo sapiens] 32 0.084
gi|39812378 RAN binding protein 9 [Homo sapiens] 32 0.11
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 32 0.14
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.14
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.19
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.19
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 31 0.19
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 31 0.19
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 31 0.19
gi|41872374 polo-like kinase 3 [Homo sapiens] 31 0.19
gi|11056048 doublesex and mab-3 related transcription factor 3 [... 31 0.19
gi|112421108 capicua homolog [Homo sapiens] 31 0.19
gi|28875786 FCH and double SH3 domains 1 [Homo sapiens] 31 0.19
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 31 0.19
gi|157168329 formin 1 [Homo sapiens] 31 0.25
gi|133922582 zinc finger protein 358 [Homo sapiens] 31 0.25
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 30 0.32
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 30 0.32
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 30 0.32
>gi|239754655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 76
Score = 162 bits (411), Expect = 4e-41
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
Query: 61 PPDHTSDPPSPYTHCP 76
PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76
>gi|239749201 PREDICTED: hypothetical protein XP_002346947 [Homo
sapiens]
Length = 76
Score = 162 bits (411), Expect = 4e-41
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
Query: 61 PPDHTSDPPSPYTHCP 76
PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76
>gi|239743281 PREDICTED: hypothetical protein XP_002342784 [Homo
sapiens]
Length = 76
Score = 162 bits (411), Expect = 4e-41
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
Query: 61 PPDHTSDPPSPYTHCP 76
PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76
>gi|239508964 PREDICTED: similar to FLJ00248 protein [Homo
sapiens]
Length = 76
Score = 162 bits (411), Expect = 4e-41
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
Query: 61 PPDHTSDPPSPYTHCP 76
PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 2 MGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQM-----SQGEPRPSS 56
+G L L P P R P P P+ P +W+ G A G S+ P PS
Sbjct: 645 IGGLSLSPSP---ERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSK 701
Query: 57 SAVGPPD---HTSDPPSPYTHCP 76
P D HT + SP T P
Sbjct: 702 RKRTPSDKSAHTVEHGSPRTRDP 724
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 9 PPPPIMSARVLPRPSPSRGPSTAWLSGPELIA 40
P PP + R +P SP+R P GPE A
Sbjct: 801 PAPPQKAKRSVPPASPARAPPATETPGPEKAA 832
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 2 MGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQM-----SQGEPRPSS 56
+G L L P P R P P P+ P +W+ G A G S+ P PS
Sbjct: 640 IGGLSLSPSP---ERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSK 696
Query: 57 SAVGPPD---HTSDPPSPYTHCP 76
P D HT + SP T P
Sbjct: 697 RKRTPSDKSAHTVEHGSPRTRDP 719
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 9 PPPPIMSARVLPRPSPSRGPSTAWLSGPELIA 40
P PP + R +P SP+R P GPE A
Sbjct: 796 PAPPQKAKRSVPPASPARAPPATETPGPEKAA 827
>gi|32490559 low density lipoprotein receptor-related protein 10
precursor [Homo sapiens]
Length = 713
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 11 PPIMSARVLPRPSPSRGPSTA-WLSGP------ELIALTGLLQMSQGEPRPSSSAVGPPD 63
PP+ LP S S P+T GP E L+G++Q +G PS +GPP
Sbjct: 614 PPLPIKAPLPSASTSPAPTTVPEAPGPLPSLPLEPSLLSGVVQALRGRLLPS---LGPPG 670
Query: 64 HTSDPPSPYT 73
T PP P+T
Sbjct: 671 PTRSPPGPHT 680
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 9 PPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
PPPP R P P PSR P+ A P RPS + PP + P
Sbjct: 299 PPPPPARGRGAPPPPPSRAPTAAPPPPP--------------PSRPSVAVPPPPPNRMYP 344
Query: 69 PSP 71
P P
Sbjct: 345 PPP 347
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 18/68 (26%)
Query: 4 SLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPD 63
S+ + PPPP R+ P P P+ PS+A SGP P PS VGP
Sbjct: 331 SVAVPPPPP---NRMYPPPPPAL-PSSA-PSGPP-------------PPPPSVLGVGPVA 372
Query: 64 HTSDPPSP 71
PP P
Sbjct: 373 PPPPPPPP 380
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 32.3 bits (72), Expect = 0.084
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 3 GSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGL-LQMSQGEPRPSSSAVGP 61
G++ L P PP P SP R P PE + L LQ PRP P
Sbjct: 1235 GAMLLSPEPPAKEVEARPPLSPERAPEHDLEVEPEPPMMLPLPLQPPLPPPRPPRPPSPP 1294
Query: 62 PD-------HTSDPPSP 71
P+ H S PP P
Sbjct: 1295 PEPETTDASHPSVPPEP 1311
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 7 LLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTS 66
+LP PP +SA P SP G G L A L + P P ++A PP
Sbjct: 34 VLPAPPAVSAGSSPAGSPGGG-----AGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPP 88
Query: 67 DPPSPYTHCP 76
PP P
Sbjct: 89 PPPPASAAAP 98
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 4 SLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGP 61
+L L PPPP A P P P P A + P + G P P A GP
Sbjct: 66 ALLLHPPPPPPPATAAPPPPPPPPPPPASAAAP-----------ASGPPAPPGLAAGP 112
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 19/70 (27%)
Query: 10 PPPIMSARVLPRPSPS--RGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
PPP+ ++ R S + RG + +W GP G P + A PPDH+
Sbjct: 150 PPPLPTSCHWARRSCALRRGGAASWRRGP-------------GTPAAAPEAPSPPDHS-- 194
Query: 68 PPSPYT-HCP 76
PSP+T CP
Sbjct: 195 -PSPWTSRCP 203
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 19/70 (27%)
Query: 10 PPPIMSARVLPRPSPS--RGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
PPP+ ++ R S + RG + +W GP G P + A PPDH+
Sbjct: 150 PPPLPTSCHWARRSCALRRGGAASWRRGP-------------GTPAAAPEAPSPPDHS-- 194
Query: 68 PPSPYT-HCP 76
PSP+T CP
Sbjct: 195 -PSPWTSRCP 203
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 19/70 (27%)
Query: 10 PPPIMSARVLPRPSPS--RGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
PPP+ ++ R S + RG + +W GP G P + A PPDH+
Sbjct: 150 PPPLPTSCHWARRSCALRRGGAASWRRGP-------------GTPAAAPEAPSPPDHS-- 194
Query: 68 PPSPYT-HCP 76
PSP+T CP
Sbjct: 195 -PSPWTSRCP 203
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 10 PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPP 62
PPP P SRGPST P+ G + S+G P P +++VGPP
Sbjct: 644 PPPC------PLHGGSRGPSTFLPEPPDTYEEDGGVYFSEG-PEPPTASVGPP 689
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 2 MGSLKLLPPP-PIMSARVLPRPSPSRGPSTAWLS----GPELI--------ALTGLLQMS 48
+G + + PPP P +SA+ P P P P++ +S GP LI L LQ +
Sbjct: 1019 LGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQPN 1078
Query: 49 QGE-PRPSSSAVGPPDHTSDPPSP 71
G P+ S +G TS PP+P
Sbjct: 1079 SGSLPQVLPSPLGVLSGTSRPPTP 1102
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 5 LKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRP----SSSAVG 60
L++ P PP PR P+ GP T+ +SGP L L ++ G P P SS +
Sbjct: 571 LQVPPSPPASPTLQAPRRPPTPGPDTS-VSGPRL-----TLALAPGPPPPPSRSPSSTLS 624
Query: 61 PPD---HTSDPPS 70
PD H+S S
Sbjct: 625 GPDLAGHSSSATS 637
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 5 LKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRP----SSSAVG 60
L++ P PP PR P+ GP T+ +SGP L L ++ G P P SS +
Sbjct: 840 LQVPPSPPASPTLQAPRRPPTPGPDTS-VSGPRL-----TLALAPGPPPPPSRSPSSTLS 893
Query: 61 PPD---HTSDPPS 70
PD H+S S
Sbjct: 894 GPDLAGHSSSATS 906
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 7 LLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAV-GPPDHT 65
L P PP+ + L PSPS PS L P SQ P ++ + PP
Sbjct: 331 LPPSPPLATPLPLAPPSPSAPPSLQTLPSPP------ATPPSQAPPSMTTPPMQAPPSLQ 384
Query: 66 SDPPSPYTH 74
+ PP H
Sbjct: 385 TIPPIQVPH 393
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 5 LKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRP----SSSAVG 60
L++ P PP PR P+ GP T+ +SGP L L ++ G P P SS +
Sbjct: 532 LQVPPSPPASPTLQAPRRPPTPGPDTS-VSGPRL-----TLALAPGPPPPPSRSPSSTLS 585
Query: 61 PPD---HTSDPPS 70
PD H+S S
Sbjct: 586 GPDLAGHSSSATS 598
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
++ L LLPPPP +LP + P G LIA L +S P P + A G
Sbjct: 97 VLPDLDLLPPPPPPPPVLLPSEEEAPAP-----MGASLIADLEQLHLSPPPPPPQAPAEG 151
Query: 61 P 61
P
Sbjct: 152 P 152
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
++ L LLPPPP +LP + P G LIA L +S P P + A G
Sbjct: 97 VLPDLDLLPPPPPPPPVLLPSEEEAPAP-----MGASLIADLEQLHLSPPPPPPQAPAEG 151
Query: 61 P 61
P
Sbjct: 152 P 152
>gi|41872374 polo-like kinase 3 [Homo sapiens]
Length = 646
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 8 LPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGL 44
L P P A P P GP + L GPEL L GL
Sbjct: 8 LSPRPFQRAAAAPAPPAGPGPPPSALRGPELEMLAGL 44
>gi|11056048 doublesex and mab-3 related transcription factor 3
[Homo sapiens]
Length = 472
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 4 SLKLLP-PPPIMSARVLPRPSPSRGPSTAWLSGP--ELIALTGLLQMSQGEPRPSSSAVG 60
SL+ LP PPP A P+P P+ PS P EL A L ++ +P + +
Sbjct: 90 SLRALPGPPPPGDAVAAPQPPPASQPSQPQPPRPAAELAAAAALRWTAEPQPGALQAQLA 149
Query: 61 PPDHTSD 67
PD T +
Sbjct: 150 KPDLTEE 156
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 8 LPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
+PPP +A P PSP+ GP S +G Q + P P S G P
Sbjct: 1537 VPPPTGTAAAPAPTPSPAGGPDPTSPSSD-----SGTAQAAPPLPPPPESGPGQPGWEGA 1591
Query: 68 P-PSP 71
P PSP
Sbjct: 1592 PQPSP 1596
>gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]
Length = 690
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 9 PPPPIMS--ARVLPRPSPSR-----------GPSTAWLSGPELIALTGLLQMSQGEPRPS 55
P PP +S ++LP PSP GP L G + + G L M RP
Sbjct: 611 PGPPELSDPEQMLPSPSPPSFSPPAPTSVLDGPPAPVLPGDKALDFPGFLDMMAPRLRPM 670
Query: 56 SSAVGPPDHTSDP--PSPYT 73
PP DP P P T
Sbjct: 671 RPPPPPPAKAPDPGHPDPLT 690
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 2 MGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPS 55
MG+ P PP+ P PSP +G + + P ++ L +S G+P PS
Sbjct: 501 MGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGALP-LPLSLGQPPPS 553
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
++GS LPPPP +S+ P+P R P L G +G L G P P +++
Sbjct: 432 LLGSDAHLPPPPTLSSGSPPQP---RHPIQPSLPG----TTSGSLSSVPGAPAPPAASKA 484
Query: 61 PPDHTSDPPSPYTHCP 76
P PSP P
Sbjct: 485 PV-----VPSPVLQSP 495
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 22/86 (25%)
Query: 7 LLPPPPIMSARVLPRPSPSRG--PSTAWLSGPELIALTGLLQMSQGEP------------ 52
L PP P++S ++ + P G P + S P L L LQ+ +P
Sbjct: 762 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSP-LACLLQSLQIPPEQPEAPCLPPESPAS 820
Query: 53 -------RPSSSAVGPPDHTSDPPSP 71
RP SA+ PP + DPP P
Sbjct: 821 ALEPEPARPPLSALAPPHGSPDPPVP 846
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 9 PPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
PPPP+ S P+P P +A GP L P P S+ GPP P
Sbjct: 654 PPPPLPSGLGSLSPAPPMPPVSA---GPPLPP-----PPPPPPPLPPPSSAGPPPPPPPP 705
Query: 69 PSPYTHCP 76
P P + P
Sbjct: 706 PLPNSPAP 713
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 8 LPPP---PIMSARVLPRPSP--SRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPP 62
LP P P+ +R P P+P S P +GP+L+ L + +P P S P
Sbjct: 471 LPDPSSKPLPGSRSTPSPTPVESSDPKAGHDAGPDLVPSPDLDPVPSPDPDPVPSPDPNP 530
Query: 63 DHTSDPPSP 71
DP SP
Sbjct: 531 VSCPDPCSP 539
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 10 PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
P P + P PSP GPS + GP G G P P + G P T P
Sbjct: 4 PDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMG-PSPGPPSAGHPIPTQGP 61
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
M + LPPP + + P P P GP + P G+ + P PS G
Sbjct: 213 MQQQMPTLPPPSVSATGPGPGPGPGPGPGPG-PAPPNYSRPHGMGGPNMPPPGPSGVPPG 271
Query: 61 PPDH-TSDPPSPYTHCP 76
P PP P+ P
Sbjct: 272 MPGQPPGGPPKPWPEGP 288
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 10 PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
P P + P PSP GPS + GP G G P P + G P T P
Sbjct: 4 PDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMG-PSPGPPSAGHPIPTQGP 61
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
M + LPPP + + P P P GP + P G+ + P PS G
Sbjct: 213 MQQQMPTLPPPSVSATGPGPGPGPGPGPGPG-PAPPNYSRPHGMGGPNMPPPGPSGVPPG 271
Query: 61 PPDH-TSDPPSPYTHCP 76
P PP P+ P
Sbjct: 272 MPGQPPGGPPKPWPEGP 288
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 10 PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
P P + P PSP GPS + GP G G P P + G P T P
Sbjct: 4 PDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMG-PSPGPPSAGHPIPTQGP 61
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 1 MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
M + LPPP + + P P P GP + P G+ + P PS G
Sbjct: 213 MQQQMPTLPPPSVSATGPGPGPGPGPGPGPG-PAPPNYSRPHGMGGPNMPPPGPSGVPPG 271
Query: 61 PPDH-TSDPPSPYTHCP 76
P PP P+ P
Sbjct: 272 MPGQPPGGPPKPWPEGP 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,066,289
Number of Sequences: 37866
Number of extensions: 298640
Number of successful extensions: 2277
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 1891
Number of HSP's gapped (non-prelim): 589
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.