Guide to the Human Genome
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Name: LOC100129619 Sequence: fasta or formatted (114aa) NCBI GI: 239743144
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {114aa} PREDICTED: hypothetical protein
alt prot {337aa} PREDICTED: hypothetical protein
alt mRNA {114aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.3         22           3
 C cysteine            2.6          3           1
 D aspartate           0.9          1           1
 E glutamate           0.9          1           1
 F phenylalanine       0.0          0           0
 G glycine            12.3         14           2
 H histidine           4.4          5           1
 I isoleucine          1.8          2           1
 K lysine              2.6          3           1
 L leucine             6.1          7           1
 M methionine          1.8          2           1
 N asparagine          0.9          1           1
 P proline             9.6         11           1
 Q glutamine           3.5          4           1
 R arginine           10.5         12           2
 S serine             10.5         12           2
 T threonine           6.1          7           2
 V valine              2.6          3           1
 W tryptophan          3.5          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129619          1.000   PREDICTED: hypothetical protein 
LOC100129619          1.000   PREDICTED: hypothetical protein 
LOC100129619          0.967   PREDICTED: hypothetical protein 
LOC100291311          0.033   PREDICTED: hypothetical protein XP_002347439 
LOC100289410          0.033   PREDICTED: hypothetical protein XP_002344274 
PLXNA1                0.033   plexin A1 
LOC100293975          0.033   PREDICTED: hypothetical protein 
LOC100290812          0.033   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.033   PREDICTED: hypothetical protein XP_002343496 
TRIM28                0.033   tripartite motif-containing 28 protein 
MAP3K1                0.028   mitogen-activated protein kinase kinase kinase 1 [H...
LOC100128559          0.028   PREDICTED: hypothetical protein 
LOC100128559          0.028   PREDICTED: hypothetical protein 
LOC100287514          0.028   PREDICTED: hypothetical protein XP_002343754 
LOC100128559          0.028   PREDICTED: hypothetical protein 
FBXO42                0.028   F-box protein 42 
LOC100293375          0.028   PREDICTED: hypothetical protein 
NACAD                 0.023   NAC alpha domain containing 
NACAD                 0.023   PREDICTED: NAC alpha domain containing 
NACAD                 0.023   PREDICTED: NAC alpha domain containing 
NACAD                 0.023   PREDICTED: NAC alpha domain containing 
NACAD                 0.023   PREDICTED: NAC alpha domain containing 
ATXN7L2               0.023   ataxin 7-like 2 
ODZ3                  0.023   odz, odd Oz/ten-m homolog 3 
BIN2                  0.023   bridging integrator 2 
LOC339192             0.023   PREDICTED: hypothetical protein 
LOC645321             0.023   PREDICTED: hypothetical protein 
LOC100289316          0.023   PREDICTED: hypothetical protein 
LOC339192             0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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