Guide to the Human Genome
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Name: LOC100287349 Sequence: fasta or formatted (102aa) NCBI GI: 239508804
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {102aa} PREDICTED: hypothetical protein XP_002342760
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8          9           2
 C cysteine            2.9          3           1
 D aspartate           2.0          2           1
 E glutamate           4.9          5           2
 F phenylalanine       2.0          2           1
 G glycine             8.8          9           2
 H histidine           1.0          1           1
 I isoleucine          3.9          4           1
 K lysine              9.8         10           2
 L leucine             9.8         10           4
 M methionine          2.0          2           1
 N asparagine          2.9          3           1
 P proline             2.0          2           1
 Q glutamine           5.9          6           1
 R arginine            7.8          8           1
 S serine             12.7         13           2
 T threonine           3.9          4           2
 V valine              6.9          7           1
 W tryptophan          2.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292798          1.000   PREDICTED: hypothetical protein 
LOC100129619          1.000   PREDICTED: hypothetical protein 
LOC100287349          1.000   PREDICTED: hypothetical protein XP_002342760 
MON2                  0.023   MON2 homolog 
FKBP5                 0.011   FK506 binding protein 5 isoform 2 
CCIN                  0.011   calicin 
LOC100129969          0.006   PREDICTED: Transmembrane protein ENSP00000340100 [H...
LOC100129969          0.006   PREDICTED: Transmembrane protein ENSP00000340100 [H...
LOC100129969          0.006   PREDICTED: Transmembrane protein ENSP00000340100 [H...
NUP214                0.006   nucleoporin 214kDa 
THAP11                0.006   THAP domain containing 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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