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Search of human proteins with 239748973
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748973 PREDICTED: hypothetical protein [Homo sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754389 PREDICTED: hypothetical protein [Homo sapiens] 340 4e-94
gi|239748973 PREDICTED: hypothetical protein [Homo sapiens] 340 4e-94
gi|239742995 PREDICTED: hypothetical protein XP_002342714 [Homo ... 340 4e-94
gi|32698950 hypothetical protein LOC283870 [Homo sapiens] 31 0.53
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 30 1.2
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 29 1.5
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i... 29 1.5
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i... 29 1.5
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i... 29 1.5
gi|38505282 voltage-dependent calcium channel alpha 1G subunit i... 29 1.5
gi|38505278 voltage-dependent calcium channel alpha 1G subunit i... 29 1.5
gi|38505272 voltage-dependent calcium channel alpha 1G subunit i... 29 1.5
gi|38505268 voltage-dependent calcium channel alpha 1G subunit i... 29 1.5
gi|190341097 rhomboid family 1 [Homo sapiens] 29 2.0
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 28 2.6
gi|55749742 HEAT repeat containing 5B [Homo sapiens] 28 3.4
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|239754702 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo ... 28 4.5
gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo ... 28 4.5
gi|239509001 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|40288197 GATA binding protein 6 [Homo sapiens] 27 5.8
gi|38348368 hypothetical protein LOC374872 [Homo sapiens] 27 5.8
gi|14149987 WD repeat domain 24 [Homo sapiens] 27 5.8
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 27 7.6
gi|239756153 PREDICTED: hypothetical protein [Homo sapiens] 27 7.6
gi|239750693 PREDICTED: hypothetical protein [Homo sapiens] 27 7.6
gi|239745001 PREDICTED: hypothetical protein XP_002343291 [Homo ... 27 7.6
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i... 27 7.6
gi|38505270 voltage-dependent calcium channel alpha 1G subunit i... 27 7.6
>gi|239754389 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 340 bits (871), Expect = 4e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA
Sbjct: 1 MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
Query: 61 GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP
Sbjct: 61 GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
Query: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW
Sbjct: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
>gi|239748973 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 340 bits (871), Expect = 4e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA
Sbjct: 1 MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
Query: 61 GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP
Sbjct: 61 GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
Query: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW
Sbjct: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
>gi|239742995 PREDICTED: hypothetical protein XP_002342714 [Homo
sapiens]
Length = 161
Score = 340 bits (871), Expect = 4e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA
Sbjct: 1 MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
Query: 61 GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP
Sbjct: 61 GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
Query: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW
Sbjct: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
>gi|32698950 hypothetical protein LOC283870 [Homo sapiens]
Length = 228
Score = 30.8 bits (68), Expect = 0.53
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 39 AVGPDQARLQLLSHPVDAPHIAGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRH 98
A GP + RLQ L + +PH+ P+ Q IL V N T+ + H LF
Sbjct: 55 AQGPPKPRLQTLRMTLPSPHMPRPN---QTILVDVAR-NAATITVTPPQSNHSWAVLFDG 110
Query: 99 AAGFILNVCYHRGKHKVACL 118
+G I CY +H+V L
Sbjct: 111 QSGCI---CYRPEEHQVCFL 127
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 35 PDEPAVGPDQARLQLLSHPVDAPH-----IAGPHGSRQPILNVVGSFN---HLLFTIKGD 86
P P VGP R HP D P +AG ++ +N GS + + F + G+
Sbjct: 280 PSNPPVGPAPGR-----HPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE 334
Query: 87 DTRHWTKYLFRHAA 100
DT W++ + R +A
Sbjct: 335 DTLLWSRRMGRASA 348
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 26 HPPERKVQLPDEPAVGPDQARLQLLSHP--VDAPHI-AGPH 63
HP + +LP P VGP AR L+ PH+ AGPH
Sbjct: 1002 HPEGQPQRLPQPPEVGPQPARKVTLTRGGLQQPPHLPAGPH 1042
>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
isoform 13 [Homo sapiens]
Length = 2243
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1822 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1880
Query: 60 AGPHGSRQP 68
+ H + QP
Sbjct: 1881 SLEHPTMQP 1889
>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
isoform 12 [Homo sapiens]
Length = 2250
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1829 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1887
Query: 60 AGPHGSRQP 68
+ H + QP
Sbjct: 1888 SLEHPTMQP 1896
>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
isoform 10 [Homo sapiens]
Length = 2266
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1845 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1903
Query: 60 AGPHGSRQP 68
+ H + QP
Sbjct: 1904 SLEHPTMQP 1912
>gi|38505282 voltage-dependent calcium channel alpha 1G subunit
isoform 8 [Homo sapiens]
Length = 2284
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1863 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1921
Query: 60 AGPHGSRQP 68
+ H + QP
Sbjct: 1922 SLEHPTMQP 1930
>gi|38505278 voltage-dependent calcium channel alpha 1G subunit
isoform 11 [Homo sapiens]
Length = 2261
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1840 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1898
Query: 60 AGPHGSRQP 68
+ H + QP
Sbjct: 1899 SLEHPTMQP 1907
>gi|38505272 voltage-dependent calcium channel alpha 1G subunit
isoform 9 [Homo sapiens]
Length = 2273
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1852 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1910
Query: 60 AGPHGSRQP 68
+ H + QP
Sbjct: 1911 SLEHPTMQP 1919
>gi|38505268 voltage-dependent calcium channel alpha 1G subunit
isoform 14 [Homo sapiens]
Length = 2171
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1829 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1887
Query: 60 AGPHGSRQP 68
+ H + QP
Sbjct: 1888 SLEHPTMQP 1896
>gi|190341097 rhomboid family 1 [Homo sapiens]
Length = 855
Score = 28.9 bits (63), Expect = 2.0
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 22/110 (20%)
Query: 11 EGRRNTMCARNHRTLHPPERKVQLP-------DEPAVGPD---QARLQLLSHPVDAPHIA 60
E RR++ + + PP K+ +P +EP+ QA L+ +S P + HI+
Sbjct: 3 EARRDSTSSLQRKK--PPWLKLDIPSAVPLTAEEPSFLQPLRRQAFLRSVSMPAETAHIS 60
Query: 61 GPHGS-RQPILNVVGSFNHLL---------FTIKGDDTRHWTKYLFRHAA 100
PH R+P+L S + + D T+ W + RH +
Sbjct: 61 SPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCS 110
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 28.5 bits (62), Expect = 2.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 35 PDEPAVGPDQARLQLLSHPVDAPHIAGPHGSRQPILNVVGSFN 77
P EPA P ++R AP HGS Q I+N G+ N
Sbjct: 217 PAEPARSPAESR---------APETGEEHGSSQKIINTAGTSN 250
>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
Length = 2071
Score = 28.1 bits (61), Expect = 3.4
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 1 MEEAKQEGD-------LEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHP 53
+E K GD LEGR +CA H PE + + P + + ++SH
Sbjct: 592 LEAEKARGDSFTWQVTLEGRAGALCAMRSFVAHCPELLTEDVIRKLMTPIECAMTMMSH- 650
Query: 54 VDAPHIAGPHGS 65
P + HG+
Sbjct: 651 --IPSVMKAHGA 660
>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 27.7 bits (60), Expect = 4.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 26 HPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIAGPHGS 65
HP E VQLP P G +Q ++ S P P + P +
Sbjct: 64 HPAELSVQLPANPPPGLNQGCIRAASAPRWVPTLTVPQAT 103
>gi|239754702 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 4.5
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 5 KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
K +G L G + +C R R H P R P PA P+ H+ G
Sbjct: 2 KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52
Query: 62 PHGSRQPILNVVG 74
P ++ + V+G
Sbjct: 53 PGAGQRSEIQVLG 65
>gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo
sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 4.5
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 5 KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
K +G L G + +C R R H P R P PA P+ H+ G
Sbjct: 2 KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52
Query: 62 PHGSRQPILNVVG 74
P ++ + V+G
Sbjct: 53 PGAGQRSEIQVLG 65
>gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo
sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 4.5
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 5 KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
K +G L G + +C R R H P R P PA P+ H+ G
Sbjct: 2 KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52
Query: 62 PHGSRQPILNVVG 74
P ++ + V+G
Sbjct: 53 PGAGQRSEIQVLG 65
>gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 4.5
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 5 KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
K +G L G + +C R R H P R P PA P+ H+ G
Sbjct: 2 KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52
Query: 62 PHGSRQPILNVVG 74
P ++ + V+G
Sbjct: 53 PGAGQRSEIQVLG 65
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 27.3 bits (59), Expect = 5.8
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 33 QLPDEPAVGPDQARLQL---LSHPVDAPH------IAGPHGS 65
QL E A GP L L SHP APH +AGP G+
Sbjct: 64 QLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGN 105
>gi|38348368 hypothetical protein LOC374872 [Homo sapiens]
Length = 473
Score = 27.3 bits (59), Expect = 5.8
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 16 TMCARNHRTLHPPERKVQLPDEP------------AVGPDQARLQLLSHPVDAP 57
T RTLHP +VQ P P AVGP +L P DAP
Sbjct: 67 TQSLPTRRTLHPSSIQVQPPRRPFLGSHSVDKSQAAVGPACLPAELTFGPADAP 120
>gi|14149987 WD repeat domain 24 [Homo sapiens]
Length = 790
Score = 27.3 bits (59), Expect = 5.8
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 8 GDLEGRRNTMCARNHRTLHPPERKVQLPDE----------PAVGPDQARLQLLSHPVDAP 57
GD+EG + + + HP + + LP E GP+ L D+P
Sbjct: 541 GDVEGEEDELYLLDPEHAHPEDPECVLPQEAFPLRHEIVDTPPGPEH-----LQDKADSP 595
Query: 58 HIAGPHGSRQPILNVVGSFNHL 79
H++G + V SF+ L
Sbjct: 596 HVSGSEADVASLAPVDSSFSLL 617
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 26.9 bits (58), Expect = 7.6
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 38/166 (22%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1863 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1921
Query: 60 AGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLV 119
+ H + + + F+ + I+G + W L AG
Sbjct: 1922 SLEHPTDRQL------FDTISLLIQG--SLEWELKLMDELAG------------------ 1955
Query: 120 PGREAQLIHSLTAPNLG-------TFSKSSLDVTSDLLDQRECRLS 158
PG + S AP+LG +L +TS+++ + C L+
Sbjct: 1956 PGGQPSAFPS--APSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLA 1999
>gi|239756153 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 26.9 bits (58), Expect = 7.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 11 EGRRNTMCARNHRTLHP----PERKVQLPDEPAVGPDQ-ARLQLLSH---PVDAPHIAGP 62
+G + MC++ H+ LHP P LP +P ++ AR+ L H P +A A
Sbjct: 7 QGSQLRMCSQPHQWLHPLYWAPASPGLLPTQPPHSQEEYARVPHLFHLAPPANALRSASC 66
Query: 63 HG 64
HG
Sbjct: 67 HG 68
>gi|239750693 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 26.9 bits (58), Expect = 7.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 11 EGRRNTMCARNHRTLHP----PERKVQLPDEPAVGPDQ-ARLQLLSH---PVDAPHIAGP 62
+G + MC++ H+ LHP P LP +P ++ AR+ L H P +A A
Sbjct: 7 QGSQLRMCSQPHQWLHPLYWAPASPGLLPTQPPHSQEEYARVPHLFHLAPPANALRSASC 66
Query: 63 HG 64
HG
Sbjct: 67 HG 68
>gi|239745001 PREDICTED: hypothetical protein XP_002343291 [Homo
sapiens]
Length = 150
Score = 26.9 bits (58), Expect = 7.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 11 EGRRNTMCARNHRTLHP----PERKVQLPDEPAVGPDQ-ARLQLLSH---PVDAPHIAGP 62
+G + MC++ H+ LHP P LP +P ++ AR+ L H P +A A
Sbjct: 7 QGSQLRMCSQPHQWLHPLYWAPASPGLLPTQPPHSQEEYARVPHLFHLAPPANALRSASC 66
Query: 63 HG 64
HG
Sbjct: 67 HG 68
>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
isoform 3 [Homo sapiens]
Length = 2343
Score = 26.9 bits (58), Expect = 7.6
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 38/166 (22%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1829 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1887
Query: 60 AGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLV 119
+ H + + + F+ + I+G + W L AG
Sbjct: 1888 SLEHPTDRQL------FDTISLLIQG--SLEWELKLMDELAG------------------ 1921
Query: 120 PGREAQLIHSLTAPNLG-------TFSKSSLDVTSDLLDQRECRLS 158
PG + S AP+LG +L +TS+++ + C L+
Sbjct: 1922 PGGQPSAFPS--APSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLA 1965
>gi|38505270 voltage-dependent calcium channel alpha 1G subunit
isoform 2 [Homo sapiens]
Length = 2354
Score = 26.9 bits (58), Expect = 7.6
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 38/166 (22%)
Query: 2 EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
EEA+ E +LE T+ + H L P V+ PD P P L +H A H
Sbjct: 1840 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1898
Query: 60 AGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLV 119
+ H + + + F+ + I+G + W L AG
Sbjct: 1899 SLEHPTDRQL------FDTISLLIQG--SLEWELKLMDELAG------------------ 1932
Query: 120 PGREAQLIHSLTAPNLG-------TFSKSSLDVTSDLLDQRECRLS 158
PG + S AP+LG +L +TS+++ + C L+
Sbjct: 1933 PGGQPSAFPS--APSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLA 1976
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,165,368
Number of Sequences: 37866
Number of extensions: 335787
Number of successful extensions: 815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 48
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.