Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291104 Sequence: fasta or formatted (199aa) NCBI GI: 239748832
Description:

PREDICTED: hypothetical protein XP_002346815

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         15           1
 C cysteine            3.0          6           2
 D aspartate           3.0          6           1
 E glutamate           4.5          9           1
 F phenylalanine       2.5          5           1
 G glycine             6.5         13           2
 H histidine           2.0          4           1
 I isoleucine          3.0          6           1
 K lysine              6.5         13           2
 L leucine            13.1         26           3
 M methionine          1.5          3           1
 N asparagine          3.5          7           1
 P proline             8.0         16           2
 Q glutamine           4.0          8           2
 R arginine            4.5          9           1
 S serine             10.1         20           2
 T threonine           4.0          8           1
 V valine              8.5         17           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346815 
ANKRD36               0.266   PREDICTED: ankyrin repeat domain 36 
LOC100133923          0.266   PREDICTED: similar to UPF0634 protein C 
POTEA                 0.168   POTE ankyrin domain family, member A isoform 2 [Homo...
ANKRD18B              0.138   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.138   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.138   PREDICTED: ankyrin repeat domain 18B 
ANKRD18A              0.136   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.136   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.136   PREDICTED: ankyrin repeat domain 18A 
ANKRD62               0.136   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.136   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.133   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
POTEH                 0.133   ANKRD26-like family C, member 3 
POTEG                 0.130   POTE ankyrin domain family, member G 
P704P                 0.130   prostate-specific P704P 
POTEB                 0.130   protein expressed in prostate, ovary, testis, and pl...
POTEE                 0.130   protein expressed in prostate, ovary, testis, and p...
POTEC                 0.130   ANKRD26-like family B, member 2 
LOC100287399          0.130   PREDICTED: hypothetical protein XP_002343353 
LOC653781             0.130   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.130   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.130   PREDICTED: similar to protein expressed in prostate,...
POTEF                 0.130   prostate, ovary, testis expressed protein on chromo...
ANKRD20A1             0.128   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.128   ankyrin repeat domain 20 family, member A4 
POTED                 0.125   pote protein 
ANKRD20A3             0.125   ankyrin repeat domain 20 family, member A3 
LOC100288966          0.125   PREDICTED: hypothetical protein XP_002343915 isofor...
LOC100288966          0.125   PREDICTED: hypothetical protein XP_002343914 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press