Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239748761
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo
sapiens]
(513 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo ... 1019 0.0
gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo ... 1019 0.0
gi|239754229 PREDICTED: hypothetical protein [Homo sapiens] 1016 0.0
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 49 8e-06
gi|210031154 zinc finger protein 541 [Homo sapiens] 46 7e-05
gi|33946327 nucleoporin 214kDa [Homo sapiens] 46 9e-05
gi|28559039 mediator complex subunit 1 [Homo sapiens] 45 2e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 42 0.002
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 41 0.002
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 41 0.003
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 41 0.003
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 41 0.003
gi|89276766 trophinin isoform 5 [Homo sapiens] 40 0.005
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 40 0.005
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 39 0.009
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 39 0.009
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens] 39 0.011
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 39 0.011
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 39 0.015
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 39 0.015
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 38 0.019
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 38 0.019
gi|153792074 proline rich 12 [Homo sapiens] 37 0.033
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 37 0.043
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 37 0.043
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 37 0.043
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 37 0.043
gi|73476377 LBXCOR1 homolog [Homo sapiens] 37 0.043
>gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo
sapiens]
Length = 513
Score = 1019 bits (2636), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS 60
MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS
Sbjct: 1 MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS 60
Query: 61 VSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR 120
VSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR
Sbjct: 61 VSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR 120
Query: 121 WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS 180
WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS
Sbjct: 121 WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS 180
Query: 181 APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL 240
APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL
Sbjct: 181 APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL 240
Query: 241 SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS 300
SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS
Sbjct: 241 SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS 300
Query: 301 MLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL 360
MLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL
Sbjct: 301 MLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL 360
Query: 361 VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS 420
VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS
Sbjct: 361 VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS 420
Query: 421 SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN 480
SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN
Sbjct: 421 SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN 480
Query: 481 AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA 513
AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA
Sbjct: 481 AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA 513
>gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo
sapiens]
Length = 513
Score = 1019 bits (2636), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS 60
MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS
Sbjct: 1 MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS 60
Query: 61 VSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR 120
VSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR
Sbjct: 61 VSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR 120
Query: 121 WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS 180
WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS
Sbjct: 121 WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS 180
Query: 181 APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL 240
APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL
Sbjct: 181 APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL 240
Query: 241 SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS 300
SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS
Sbjct: 241 SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS 300
Query: 301 MLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL 360
MLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL
Sbjct: 301 MLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL 360
Query: 361 VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS 420
VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS
Sbjct: 361 VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS 420
Query: 421 SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN 480
SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN
Sbjct: 421 SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN 480
Query: 481 AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA 513
AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA
Sbjct: 481 AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA 513
>gi|239754229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 1016 bits (2626), Expect = 0.0
Identities = 511/513 (99%), Positives = 511/513 (99%)
Query: 1 MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS 60
MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS
Sbjct: 1 MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPS 60
Query: 61 VSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR 120
VSSA FSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR
Sbjct: 61 VSSAGFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFR 120
Query: 121 WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS 180
WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS
Sbjct: 121 WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS 180
Query: 181 APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL 240
APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL
Sbjct: 181 APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSL 240
Query: 241 SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS 300
SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS
Sbjct: 241 SREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFS 300
Query: 301 MLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL 360
MLANSPLESR TPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL
Sbjct: 301 MLANSPLESRFTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGL 360
Query: 361 VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS 420
VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS
Sbjct: 361 VVAAGVAVVAALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGS 420
Query: 421 SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN 480
SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN
Sbjct: 421 SSVTGGFGKSSGGLGRRPCRGCAGEGRKTDLRGSRGCHLQNLLDVCQLDGRLARDGLDHN 480
Query: 481 AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA 513
AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA
Sbjct: 481 AAVRLDDEALLEGLQGQVLYAVLGRGENCERTA 513
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/235 (28%), Positives = 94/235 (40%), Gaps = 18/235 (7%)
Query: 39 LSSSLFSEDLFSAALSPSEG----PSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGA 94
+ S+ ++ S A +PS+ PS S AS S+ + A + S TS S SS SGA
Sbjct: 126 IPSAFWASPSASGASTPSDSGWASPSASWASTSSDSGWASPSASWTSPSASCASSSASGA 185
Query: 95 GWGPSSAVLAPSPF--SSLGSW--RPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAP 150
S +PS F S SW P F W P + S ++ C +A A
Sbjct: 186 STPSDSGWASPSVFWVSPSTSWASSPSDFGW-ASTPSD---SGWASSSASCISPSASGAS 241
Query: 151 ASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCT 210
S + S S V+ S SR SS + AS S +S W+ P + +
Sbjct: 242 TSSDSGWASPSASWVSTSTSR---ASTSSDSGWASSSASWDSITSDSGWVCPSASWASSS 298
Query: 211 GEAVSAVACSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGV 265
SA + S +SP+ R+S G + P D G +S H SGV
Sbjct: 299 ASWASAPSDSGSSSPSVSRASTLSVSGWASFSASGASAPSD--SGWTS-HSASGV 350
Score = 48.5 bits (114), Expect = 1e-05
Identities = 102/407 (25%), Positives = 152/407 (37%), Gaps = 57/407 (14%)
Query: 50 SAALSPSEGPSVSS-ASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPF 108
S++ S + PS S AS SA + P +DS ++ + G S+ S +GW SA A P
Sbjct: 22 SSSASGASTPSNSGWASPSASGASIP-SDSGWASPSASGASTPSNSGWASFSASWASIPS 80
Query: 109 SSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCE--AAPPAPASPSPSASLKSMSLVA 166
S W + W + P S AS S A+P + PSA S S
Sbjct: 81 DS--GWASPSASWASTPSDSGWASPSASGASIPSDSGWASPSVSGASIPSAFWASPSASG 138
Query: 167 KSR---------SRLWLLDASSS---APSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAV 214
S S W +S S +PSAS S C+SS + + P S +V
Sbjct: 139 ASTPSDSGWASPSASWASTSSDSGWASPSASWTSPSASCASSSASGASTPSDSGWASPSV 198
Query: 215 SAVACST--GASPATWRSSVAPSD----------------GCSLSREEDQDDPGDVKKGK 256
V+ ST +SP+ + + PSD G S S + P
Sbjct: 199 FWVSPSTSWASSPSDFGWASTPSDSGWASSSASCISPSASGASTSSDSGWASPSASWVST 258
Query: 257 SSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFSMLANSPLESRSTPPLL 316
S+ ++ G A W + +G + AS + A++P +S S+ P +
Sbjct: 259 STSRASTSSDSGWASSSASWDSI---TSDSGWVCPSASWASSSASWASAPSDSGSSSPSV 315
Query: 317 ARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDS-FGLVVAAGVAVVAALGTE 375
+R A SV AS +GA DS + A+GV+ + G
Sbjct: 316 SR----------------ASTLSVSGWASFSASGASAPSDSGWTSHSASGVSTTSDSGWA 359
Query: 376 PPKLSEAVVLLPV-LAGPGSATLVFSRVGAEDTDEMIWAMEASGGSS 421
P S A A P ++ S GA + WA ++ G+S
Sbjct: 360 SPSASGASTSSDSGWASPSASWASPSASGASTPSDSGWASPSASGAS 406
Score = 41.6 bits (96), Expect = 0.002
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 15/209 (7%)
Query: 34 SVFGFLSSSLFSEDLFSAALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSG 93
S FG+ S+ S+ ++++ + PS S AS S+ + A + S S S S+ S
Sbjct: 212 SDFGWASTP--SDSGWASSSASCISPSASGASTSSDSGWASPSASWVSTSTSRA-STSSD 268
Query: 94 AGWGPSSAVLAPSPFSS-----LGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPP 148
+GW SSA S SW + W + P VS+AS S
Sbjct: 269 SGWASSSASWDSITSDSGWVCPSASWASSSASWASAPSDSGSSSPSVSRASTLSVSGWAS 328
Query: 149 APASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSR 208
AS + + S + + S + +S + ASP S SS W SP +
Sbjct: 329 FSASGASAPSDSGWTSHSASG-----VSTTSDSGWASPSASGASTSSDSGWASPSASWAS 383
Query: 209 CTGEAVSAVACSTGASPATWRSSV--APS 235
+ S + S ASP+ +S+ APS
Sbjct: 384 PSASGASTPSDSGWASPSASGASMPSAPS 412
Score = 36.6 bits (83), Expect = 0.056
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 21/185 (11%)
Query: 85 SGGFSSCSGAGWGPSSAVLAPSPF-------SSLGSWRPCAFRWRLRVPRNLKLFPQVSQ 137
+ G S+ SG+GW SSA A +P S+ G+ P W
Sbjct: 9 ASGVSTPSGSGWASSSASGASTPSNSGWASPSASGASIPSDSGWASPSASGASTPSNSGW 68
Query: 138 ASFCSCEAAPPAP---ASPSPS-ASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPC 193
ASF + A+ P+ ASPS S AS S S A + + + S S S +S+P
Sbjct: 69 ASFSASWASIPSDSGWASPSASWASTPSDSGWASPSASGASIPSDSGWASPSVSGASIP- 127
Query: 194 SSSGSWLSPRPCSSRC---TGEAVSAVACSTGASPATWRSSVA----PSDGCSLSREEDQ 246
S W SP + +G A + + ++ +S + W S A PS C+ S
Sbjct: 128 --SAFWASPSASGASTPSDSGWASPSASWASTSSDSGWASPSASWTSPSASCASSSASGA 185
Query: 247 DDPGD 251
P D
Sbjct: 186 STPSD 190
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 46.2 bits (108), Expect = 7e-05
Identities = 54/204 (26%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 54 SPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGS 113
+PS GP+ AGAS + G ++ S G SSC+ A GP + AP+ +
Sbjct: 287 TPSPGPA------PAGASDSEGRNTACPCPASSGSSSCTPA--GPHA---APAALDTELP 335
Query: 114 WRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLW 173
PC +P+ + + + E P P P P +L L A+S + W
Sbjct: 336 EEPC-------LPQKEPATDVFTAPNSRAAENGAPDPPEPEPDTAL----LQARSTAECW 384
Query: 174 LLDASSSAPSASPVL-------SSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPA 226
S P+ P+ SS P S S WL P + G V V A P+
Sbjct: 385 --PEGGSVPACLPLFRGQTVPASSQPSSHSFQWLRNLPGCPKSKGNNVFVVH-KPSAVPS 441
Query: 227 TWRSSVAPSDGCSLSREEDQDDPG 250
S P EE PG
Sbjct: 442 REGSESGPGPSSGSPSEESPPGPG 465
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 45.8 bits (107), Expect = 9e-05
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 17 LQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEGPSVSSASFSAGASPAPGA 76
+ TF LL A A +VF F SSSL S +A E PS SS S S+ A+P PG
Sbjct: 467 IATFSLLPAGGAP----TVFSFGSSSLKS-----SATVTGEPPSYSSGSDSSKAAPGPGP 517
Query: 77 DSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVS 136
+ + F S A P+ A +P ++ S+ F+ L P VS
Sbjct: 518 STFS-------FVPPSKASLAPTPAASPVAPSAASFSFGSSGFKPTLESTP----VPSVS 566
Query: 137 QASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSS 196
+ + PP+ ++ + S K + + + +S SAP SP S+ ++S
Sbjct: 567 APNIAMKPSFPPSTSAVKVNLSEKFTAAATSTP-----VSSSQSAPPMSPFSSASKPAAS 621
Query: 197 GSWLSPRPCSSRCTGEAV-SAVACSTGASPATWRSSVAPS 235
G P P S+ + + S+V S A SS PS
Sbjct: 622 GPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQGSSSPVPS 661
Score = 36.6 bits (83), Expect = 0.056
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 23 LSALLATLLGESVFGFL-------SSSLFSEDLFSAALSPSEGPSVSSASF---SAGASP 72
+SA A+LL E L S S+ E + + + G + SS S SA A+P
Sbjct: 1510 VSASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAEATP 1569
Query: 73 APGA--DSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLK 130
A D+ T A S G ++A+ + P + S P A V
Sbjct: 1570 ATTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPG-- 1627
Query: 131 LFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSS 190
P A+F + + A P ++S + + + + +++APSA+PV
Sbjct: 1628 --PSAEAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNN---------TATAPSATPVFGQ 1676
Query: 191 VPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPA 226
V S++ S + S+ T A V+ S +SPA
Sbjct: 1677 VAASTAPSLFGQQTGSTASTAAATPQVSSSGFSSPA 1712
Score = 35.8 bits (81), Expect = 0.096
Identities = 98/413 (23%), Positives = 151/413 (36%), Gaps = 88/413 (21%)
Query: 36 FGFLSSSLFSEDLFSAALSPSEGPSVSSASFSAGASPAPG----ADSTTSAGVSGGFSSC 91
FG ++ + S + +PS S +FS+G P +S+ +G++ ++
Sbjct: 1225 FGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGGSKPSYEAIPESSPPSGITSASNTT 1284
Query: 92 SGAGWGPSSAVLAPS--PFSSLGSWRPCAFRWRLRVPRNL---KLFPQ----VSQASFCS 142
G SS +APS S+ S +L P + LFP + SF
Sbjct: 1285 PGEPAASSSRPVAPSGTALSTTSS--------KLETPPSKLGELLFPSSLAGETLGSFSG 1336
Query: 143 CEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPS-----ASPVLSSVPCSSSG 197
A S P+ S SL + ++ +S PS A PVL G
Sbjct: 1337 LRVG-QADDSTKPTNKASSTSLTSTQPTK------TSGVPSGFNFTAPPVL--------G 1381
Query: 198 SWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKS 257
P P +S T +V+ A ++ +S A + S S G S G + G +
Sbjct: 1382 KHTEP-PVTSSATTTSVAPPAATSTSSTAVFGSLPVTSAGSS----------GVISFGGT 1430
Query: 258 SLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFSMLANSPLESRSTPPL-L 316
SL F + N +P PP L + S ++ S L S +TP L +
Sbjct: 1431 SLSAGKTSFSFGSQQTNSTVPPSAPPPTTAATPLPT---SFPTLSFGSLLSSATTPSLPM 1487
Query: 317 ARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGLVVAAGVAVV------A 370
+ GR S EA S L G + V+A A + A
Sbjct: 1488 SAGR------------------STEEATSSALPEKPGDSE-----VSASAASLLEEQQSA 1524
Query: 371 ALGTEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGSSSV 423
L PP+ S++V PVLA P + S A T + + EA+ ++ V
Sbjct: 1525 QLPQAPPQTSDSVKKEPVLAQPAVSN---SGTAASSTSLVALSAEATPATTGV 1574
Score = 35.8 bits (81), Expect = 0.096
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 34 SVFGFLSSSLFSEDLFSAALSPSEGPSV----------SSASFSAGASPAPGADSTTSAG 83
SVFG SS+ S SP+ G + S F G S G + T+
Sbjct: 1770 SVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGSVFGGTSAATTTA 1829
Query: 84 VSGGFSSCSGAGWGPSS 100
+ GFS C +G+G S+
Sbjct: 1830 ATSGFSFCQASGFGSSN 1846
Score = 32.7 bits (73), Expect = 0.81
Identities = 43/143 (30%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 97 GPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPAS---P 153
G S + P S G +P + P + P SQA +A APAS
Sbjct: 409 GVKSLIKTPERLSLEGERQP-------KSPGSTPTTPTSSQAPQKLDASAAAAPASLPPS 461
Query: 154 SPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLS-PRPCSSRCTGE 212
SP+A + + SL+ + SSS S++ V P SSGS S P T
Sbjct: 462 SPAAPIATFSLLPAGGAPTVFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFS 521
Query: 213 AVSAVACSTGASPATWRSSVAPS 235
V S +PA S VAPS
Sbjct: 522 FVPPSKASLAPTPAA--SPVAPS 542
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 45.1 bits (105), Expect = 2e-04
Identities = 69/236 (29%), Positives = 100/236 (42%), Gaps = 38/236 (16%)
Query: 45 SEDLFSAALSPSEGPSVSSASFSAGASPA-PGADSTTSAGVSGGFSSCSGAGWGPSSAVL 103
S S+++ S+G S SS S ++ S PG+ T G+S G SS G S+++
Sbjct: 1123 SSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLM 1182
Query: 104 APS---PFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLK 160
PS P S RP +L P P P +P PS+ K
Sbjct: 1183 NPSLSKPNISPSHSRPPGGSDKLASPMK-------------------PVPGTP-PSSKAK 1222
Query: 161 SMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPR--PCSSRCTGEAVSAVA 218
S S + S S+S + SS SSGS LS + P S+ CT A S+
Sbjct: 1223 SPISSGSGGSHM------SGTSSSSGMKSSSGLGSSGS-LSQKTPPSSNSCT--ASSSSF 1273
Query: 219 CSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLN 274
S+G+S ++ ++ S G S SR + + K K + +TSG PG PL+
Sbjct: 1274 SSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGV-VTSG--PGGEDPLD 1326
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.3 bits (103), Expect = 3e-04
Identities = 75/289 (25%), Positives = 105/289 (36%), Gaps = 48/289 (16%)
Query: 55 PSEGP--SVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPS--PFSS 110
P+EGP SVSSAS + P+P A SAG GG P+S L+ S P SS
Sbjct: 201 PTEGPRKSVSSASEHSTTEPSPAARRRPSAG--GGLQR-------PASRSLSSSATPLSS 251
Query: 111 LGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSA--SLKSMSLVAKS 168
P S S AP P+ P P +L+ +
Sbjct: 252 ----------------------PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 289
Query: 169 RSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATW 228
+ L SS+P A+P S+ S + L P SS T + + + + + A
Sbjct: 290 KDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPP 349
Query: 229 RSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGL 288
PS + G +L T P + PL+P L PPP L
Sbjct: 350 SLQTLPSPPAT------PPSQATTSLGSPTLQATHSFLP--SPPLSP-LATPPPQAPPAL 400
Query: 289 NLLVSVVASIFSMLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGP 337
L + + S A+ PL +TP A L + L + F P+ P
Sbjct: 401 AL--PPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPP 447
Score = 35.0 bits (79), Expect = 0.16
Identities = 81/315 (25%), Positives = 110/315 (34%), Gaps = 64/315 (20%)
Query: 37 GFLSSSLFSEDLFSAALSPSEGPSVSSASFSAG-----ASPAPGADSTTSAGVSGGFSSC 91
G LSSS + SAAL P++ + S+ A+P P A + SA
Sbjct: 297 GPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSA--------- 347
Query: 92 SGAGWGPSSAVLAPSP--------FSSLGSWRPCAFRWRLRVPRNLKLF---PQVSQASF 140
P S PSP +SLGS A L P L PQ A
Sbjct: 348 ------PPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALA 401
Query: 141 CSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVL------SSVPCS 194
APP+P + P + L + S A + + LL A S P + PV +S P S
Sbjct: 402 LPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS 461
Query: 195 SSGSWLSPRPCSSRCTGEAV-----SAVACSTGASPATWRSSVAPSDGCSLSREEDQDDP 249
S + S P S V ++ S A+P + L++ Q P
Sbjct: 462 PSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPP 521
Query: 250 GDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFSMLANSPLES 309
+L FPG A P +P LP P LA P ++
Sbjct: 522 ALATPPLQALPSPPASFPGQA-PFSPSASLPMSP------------------LATPPPQA 562
Query: 310 RSTPPLLARGRLLIP 324
PP+LA L +P
Sbjct: 563 ---PPVLAAPLLQVP 574
Score = 29.3 bits (64), Expect = 9.0
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 70 ASPAPGA-DSTTSAGVSGGFSSCSGAGWGPSS 100
A+PAPGA D S G SGG + +GAG G SS
Sbjct: 715 ATPAPGALDPGPSPGTSGG-KAAAGAGAGASS 745
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 41.6 bits (96), Expect = 0.002
Identities = 56/222 (25%), Positives = 87/222 (39%), Gaps = 9/222 (4%)
Query: 42 SLFSEDLFSAALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSA 101
SL ++DL +AA + + + SS+S A A P + + V G G S
Sbjct: 212 SLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGD 271
Query: 102 VLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKS 161
+ + GSW P PR P ++ + C E PP+ A S +
Sbjct: 272 AFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPRE--PPSLAEAVYSV-YRE 328
Query: 162 MSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACST 221
S VA SR A+++A +AS S PCS SW + +S ++SA A
Sbjct: 329 RSGVAGSRRAA----AATAAAAASSCSSPAPCSPPESW-GRQSTASSFVDSSLSAFAL-L 382
Query: 222 GASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITS 263
R A CS R + ++ +G+ L +T+
Sbjct: 383 PLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTN 424
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 41.2 bits (95), Expect = 0.002
Identities = 63/228 (27%), Positives = 89/228 (39%), Gaps = 47/228 (20%)
Query: 16 TLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSP-SEGPSVSSASFSAGASPAP 74
T Q+ FLLS+ L S + L+ AA P GP SS+S S+ +SP+P
Sbjct: 10 TRQSAFLLSSPPLAALH-------SMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSPSP 62
Query: 75 GADSTTSAGV----SGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLK 130
+ G+ +GG SS SP L + P L P
Sbjct: 63 PLGTHNPGGLKPPATGGLSSLG-------------SPPQQLSAATPHGINDILSRPS--- 106
Query: 131 LFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASP--VL 188
P S A+ S ASPS S+S S S A S S A+++A ++SP +L
Sbjct: 107 -MPVASGAALPS--------ASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLL 157
Query: 189 SSVPCSSS--------GSWLSPRPCSSRCTGEAVSAVACSTGASPATW 228
+ +P SS G + SP + G +A G +P W
Sbjct: 158 AGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFW 205
>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
sapiens]
Length = 528
Score = 40.8 bits (94), Expect = 0.003
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 129 LKLFPQVSQASFCSCEAAPPA--PASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASP 186
L L P++ A FC C+ PA P+ PSA++ +++ A+S SR +S P AS
Sbjct: 173 LSLPPEL--ADFCLCQRVSPASCPSRSCPSAAVFILAVAARSCSR--RRRVGTSGPEAST 228
Query: 187 VLSSV-------PCSSSGSWLSP-RPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGC 238
+ S + P ++ G P R SSR A + C + +P+ +P+ G
Sbjct: 229 LSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPASG- 287
Query: 239 SLSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLP 280
PG + G +S T PG P L +P
Sbjct: 288 --PDARGAPTPGRARGGGASWSATPTTIPGPGPPRPQLLVIP 327
>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
sapiens]
Length = 528
Score = 40.8 bits (94), Expect = 0.003
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 129 LKLFPQVSQASFCSCEAAPPA--PASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASP 186
L L P++ A FC C+ PA P+ PSA++ +++ A+S SR +S P AS
Sbjct: 173 LSLPPEL--ADFCLCQRVSPASCPSRSCPSAAVFILAVAARSCSR--RRRVGTSGPEAST 228
Query: 187 VLSSV-------PCSSSGSWLSP-RPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGC 238
+ S + P ++ G P R SSR A + C + +P+ +P+ G
Sbjct: 229 LSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPASG- 287
Query: 239 SLSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLP 280
PG + G +S T PG P L +P
Sbjct: 288 --PDARGAPTPGRARGGGASWSATPTTIPGPGPPRPQLLVIP 327
>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 528
Score = 40.8 bits (94), Expect = 0.003
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 129 LKLFPQVSQASFCSCEAAPPA--PASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASP 186
L L P++ A FC C+ PA P+ PSA++ +++ A+S SR +S P AS
Sbjct: 173 LSLPPEL--ADFCLCQRVSPASCPSRSCPSAAVFILAVAARSCSR--RRRVGTSGPEAST 228
Query: 187 VLSSV-------PCSSSGSWLSP-RPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGC 238
+ S + P ++ G P R SSR A + C + +P+ +P+ G
Sbjct: 229 LSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPASG- 287
Query: 239 SLSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLP 280
PG + G +S T PG P L +P
Sbjct: 288 --PDARGAPTPGRARGGGASWSATPTTIPGPGPPRPQLLVIP 327
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 40.8 bits (94), Expect = 0.003
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 59 PSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCA 118
P ++S S ASP ++ S S S+ + A S+ AP+P L S
Sbjct: 1792 PVLASTSAPVPASPLAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILAS----- 1846
Query: 119 FRWRLRVPRNLKLFPQVS----QASFCSCEAAPPAPASPSPSASLKSMSLVAKS--RSRL 172
+ P ++ + S ++ S A PAPA+ SP+A + + + S + +
Sbjct: 1847 ----VSTPASVTILASASIPILASALASTSAPTPAPAASSPAAPVITAPTIPASAPTASV 1902
Query: 173 WLLDASSSAPSASPVLSSVP 192
L AS+SAP+ +P S P
Sbjct: 1903 PLAPASASAPAPAPTPVSAP 1922
Score = 35.8 bits (81), Expect = 0.096
Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 37/183 (20%)
Query: 57 EGPSVSSASFSAGASPAPGAD--STTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSW 114
+ + A SA P A +TSA V S+ P A L P P S+
Sbjct: 1733 QATGIQQAQSSASVPPLASAPLPPSTSASVPASTSA-------PLPATLTPVPASTSAP- 1784
Query: 115 RPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASP----SPSASLKSMSLVAKSRS 170
VP + L P ++ S P PASP S SAS+ + + S +
Sbjct: 1785 ----------VPAST-LAPVLASTS-------APVPASPLAPVSASASVSASVPASTSAA 1826
Query: 171 RLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRS 230
+ A +SAP+ +P+L+SV +S + L +S SA+A ++ +PA S
Sbjct: 1827 AITSSSAPASAPAPTPILASVSTPASVTIL-----ASASIPILASALASTSAPTPAPAAS 1881
Query: 231 SVA 233
S A
Sbjct: 1882 SPA 1884
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 49 FSAALSPS-EGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSP 107
FS +S S GP +SA+FS GAS G +T+AG SG S+ + G P+++ + S
Sbjct: 823 FSGGVSSSFSGPLSTSATFSGGASSGFGGTLSTTAGFSGVLSTSTSFGSAPTTSTVFSSA 882
Query: 108 FSS 110
S+
Sbjct: 883 LST 885
Score = 33.9 bits (76), Expect = 0.36
Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 16/181 (8%)
Query: 62 SSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAV-LAPSPFSSLGSWRPCAFR 120
++ +FS GAS G S +G SS G GP +APS +S + +F
Sbjct: 719 TNVNFSRGASTRAGFSDGASISFNGAPSSSGGFSGGPGITFGVAPSTSASFSNTASISFG 778
Query: 121 WRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSS 180
L + S A+ S A S S AS+ + S S + +S S
Sbjct: 779 GTLSTSSSF------SSAASISFGCAHSTSTSFSSEASISFGGMPCTSASFSGGVSSSFS 832
Query: 181 AP-SASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPAT---WRSSVAPSD 236
P S S S S G LS S V + + S G++P T + S+++ S
Sbjct: 833 GPLSTSATFSGGASSGFGGTLSTTAGFS-----GVLSTSTSFGSAPTTSTVFSSALSTST 887
Query: 237 G 237
G
Sbjct: 888 G 888
Score = 32.7 bits (73), Expect = 0.81
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 55 PSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSW 114
PS G S ++G S P +T AG GG ++ +G G GPS++ S +SLG+
Sbjct: 1371 PSTGVGFCSGPSTSGFSGGP----STGAGFGGGPNTGAGFGGGPSTSAGFGSGAASLGA- 1425
Query: 115 RPCAFRW 121
C F +
Sbjct: 1426 --CGFSY 1430
Score = 30.8 bits (68), Expect = 3.1
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 42 SLFSEDLFSAALSPSEGPSVS-SASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSS 100
+L + FS+A S S G + S S SFS+ AS + G TSA SGG SS S +G +S
Sbjct: 780 TLSTSSSFSSAASISFGCAHSTSTSFSSEASISFGGMPCTSASFSGGVSS-SFSGPLSTS 838
Query: 101 AVLAPSPFSSLG 112
A + S G
Sbjct: 839 ATFSGGASSGFG 850
Score = 30.4 bits (67), Expect = 4.0
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 16 TLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAALSPSEG-PSVSSASFSAGASPAP 74
TL T S +L+T + FG S+ + +FS+ALS S G + S S G SP+
Sbjct: 852 TLSTTAGFSGVLST---STSFG---SAPTTSTVFSSALSTSTGFGGILSTSVCFGGSPSS 905
Query: 75 GAD--STTSAGVSGGFSSCSGAGWG 97
T S + G S C+ G+G
Sbjct: 906 SGSFGGTLSTSICFGGSPCTSTGFG 930
Score = 30.4 bits (67), Expect = 4.0
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 49 FSAALSPS---EGPSVSSASFSAG--ASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAV- 102
F A+S S G +SA FS +P G +TSAG G S+ + G PS+++
Sbjct: 1069 FGCAVSTSASFSGAVSTSACFSGAPITNPGFGGAFSTSAGFGGALSTAADFGGTPSNSIG 1128
Query: 103 --LAPSPFSSLG 112
APS S G
Sbjct: 1129 FGAAPSTSVSFG 1140
Score = 30.4 bits (67), Expect = 4.0
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 25/78 (32%)
Query: 49 FSAALSPS--EGPSVS---------------------SASFSAGASPAPGADS--TTSAG 83
FS A SPS +GPS S SA F G + G +TS+G
Sbjct: 1179 FSGATSPSFCDGPSTSTGFSFGNGLSTNAGFGGGLNTSAGFGGGLGTSAGFSGGLSTSSG 1238
Query: 84 VSGGFSSCSGAGWGPSSA 101
GG + +G G GP ++
Sbjct: 1239 FDGGLGTSAGFGGGPGTS 1256
Score = 29.6 bits (65), Expect = 6.9
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 49 FSAALSPS---EGPSVSSASFSAG--ASPAPGADSTTSAGVSGGFSSCSGAGWG 97
FS LS S +G +SA F G S G TSAG SGG + +G G G
Sbjct: 1229 FSGGLSTSSGFDGGLGTSAGFGGGPGTSTGFGGGLGTSAGFSGGLGTSAGFGGG 1282
Score = 29.3 bits (64), Expect = 9.0
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 49 FSAALSPSEGPS---VSSASFSAGASPAPGADST--TSAGVSGGFSSCSGAGWGPSSA 101
FS L S G V+S F G ST TSAG SGG S+ G G P+++
Sbjct: 1269 FSGGLGTSAGFGGGLVTSDGFGGGLGTNASFGSTLGTSAGFSGGLSTSDGFGSRPNAS 1326
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 40.0 bits (92), Expect = 0.005
Identities = 73/282 (25%), Positives = 97/282 (34%), Gaps = 40/282 (14%)
Query: 42 SLFSEDLFSAALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSA 101
S FS+ S L P S S S+GA A +T+SAG G S G P S
Sbjct: 2453 SAFSDQ--SRCLIAQTTPVAGSQSLSSGAV----ATTTSSAGDHNGMLSVPAPGV-PHSD 2505
Query: 102 VLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKS 161
V P +S G+ +P A L P + S S ++ + +S S S+S S
Sbjct: 2506 VGEPP--ASTGAQQPSALA---------ALQPAKERRSSSSSSSSSSSSSSSSSSSSSSS 2554
Query: 162 MSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEA-------V 214
S + S S + SS L VP SP P E
Sbjct: 2555 SSGSSSSDS-----EGSSLPVQPEVALKRVP--------SPTPAPKEAVREGRPPEPTPA 2601
Query: 215 SAVACSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLN 274
S+ +S ++ SS + S S S SS S PG
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK 2661
Query: 275 PWLPLPPPPGRNGLNLLVSVVASI--FSMLANSPLESRSTPP 314
P P PPPG + S+ L+ SP+E R P
Sbjct: 2662 PASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSP 2703
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 39.3 bits (90), Expect = 0.009
Identities = 80/299 (26%), Positives = 108/299 (36%), Gaps = 60/299 (20%)
Query: 55 PSEGP--SVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPS--PFSS 110
P+EGP SVSSAS + P+P A SAG GG P+S L+ S P SS
Sbjct: 192 PTEGPRKSVSSASEHSTTEPSPAARRRPSAG--GGLQR-------PASRSLSSSATPLSS 242
Query: 111 LGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSA--SLKSMSLVAKS 168
P S S AP P+ P P +L+ +
Sbjct: 243 ----------------------PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 280
Query: 169 RSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATW 228
+ L SS+P A+P S+ P S+ L P S S G+
Sbjct: 281 KDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSP---PATPPSQATTSLGSPTLQA 337
Query: 229 RSSVAPSDGCS-LSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPW-LPLPPPPGRN 286
S PS S L+ Q P + + + P + PL+P P P P
Sbjct: 338 THSFLPSPPLSPLATPPPQAPP-----ALALPPLQAPPSPPASPPLSPLATPSPQAPNAL 392
Query: 287 GLNLLVS--------VVASIFSMLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGP 337
++LL + V + FS A+ P+ +TPP A L P PL VP P
Sbjct: 393 AVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP---PL--QVPPSP 446
Score = 36.2 bits (82), Expect = 0.073
Identities = 76/299 (25%), Positives = 106/299 (35%), Gaps = 62/299 (20%)
Query: 37 GFLSSSLFSEDLFSAALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGW 96
G LSSS + SA SPS PS+ + P+P A + A S G +
Sbjct: 288 GPLSSSPLATPSPSAPPSPSAPPSLQTL-------PSPPATPPSQATTSLGSPTLQA--- 337
Query: 97 GPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPS 156
+ + L P S L + P A P L L P APP+P + P
Sbjct: 338 --THSFLPSPPLSPLATPPPQA-------PPALALPPL----------QAPPSPPASPPL 378
Query: 157 ASLKSMSLVAKSRSRLWLLDASSSAPSASPVL------SSVPCSSSGSWLSPRPCSSRCT 210
+ L + S A + + LL A S P + PV +S P S S + S P S
Sbjct: 379 SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP 438
Query: 211 GEAV-----SAVACSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGV 265
V ++ S A+P + L++ Q P +L
Sbjct: 439 PLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPAS 498
Query: 266 FPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFSMLANSPLESRSTPPLLARGRLLIP 324
FPG A P +P LP P LA P ++ PP+LA L +P
Sbjct: 499 FPGQA-PFSPSASLPMSP------------------LATPPPQA---PPVLAAPLLQVP 535
Score = 32.3 bits (72), Expect = 1.1
Identities = 41/151 (27%), Positives = 51/151 (33%), Gaps = 24/151 (15%)
Query: 247 DDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPP---------------GRNGLNLL 291
D+ D K ++ + PGL P P P PPPP GR L
Sbjct: 2 DNKRDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAER 61
Query: 292 VSVV--ASIFSMLANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLA 349
+ A+I + S PP RG P + GP S ASG
Sbjct: 62 AGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPA-----KNTSPGPVSSPGRASG--T 114
Query: 350 GAGGSLDSFGLVVAAGVAVVAALGTEPPKLS 380
G L GL ++A V TE PK S
Sbjct: 115 TRPGPLGQKGLRISAEETVARGKATEAPKRS 145
Score = 29.3 bits (64), Expect = 9.0
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 70 ASPAPGA-DSTTSAGVSGGFSSCSGAGWGPSS 100
A+PAPGA D S G SGG + +GAG G SS
Sbjct: 676 ATPAPGALDPGPSPGTSGG-KAAAGAGAGASS 706
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 39.3 bits (90), Expect = 0.009
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 139 SFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGS 198
S S AA PA +S S S+S S S + S S +SSS+ S+S SS SSS S
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSS 2660
Query: 199 WLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSS 258
S SS T + S+ + A+P AP+ G S K + S
Sbjct: 2661 SSSSSSSSSSSTTDEDSSCSSDDEAAP-------APTAGPSAQAALPTKATKQAGKARPS 2713
Query: 259 LHITSGVFPG---LAVPLNPWLPLPP---------PPGRNGLNL 290
H P A P P PL P P R G++L
Sbjct: 2714 AHSPGKKTPAPQPQAPPPQPTQPLQPKAQAGAKSRPKKREGVHL 2757
Score = 35.8 bits (81), Expect = 0.096
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 31/169 (18%)
Query: 56 SEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWR 115
SE S SS+ S+ +S + + S T G + G G G + A S +S
Sbjct: 2557 SESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAAS----- 2611
Query: 116 PCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLL 175
P S +S S ++ + +S S S+S S S + S S
Sbjct: 2612 -----------------PASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----- 2649
Query: 176 DASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGAS 224
SSS+ S+S SS SSS S S S C+ + +A A + G S
Sbjct: 2650 --SSSSSSSSSSSSSSSSSSSSS--STTDEDSSCSSDDEAAPAPTAGPS 2694
Score = 33.9 bits (76), Expect = 0.36
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 21/122 (17%)
Query: 40 SSSLFSEDLFSAALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPS 99
SSS S S++ S S S SS+S S+ +S + + S++S+ + SSCS
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAP 2687
Query: 100 SAVLAPSPFSSL--------GSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPA 151
+ PS ++L G RP A + P PQ +A PP P
Sbjct: 2688 APTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPA-----PQP--------QAPPPQPT 2734
Query: 152 SP 153
P
Sbjct: 2735 QP 2736
Score = 32.7 bits (73), Expect = 0.81
Identities = 41/142 (28%), Positives = 49/142 (34%), Gaps = 17/142 (11%)
Query: 142 SCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLS 201
S A P P PS+ K+ V K R L A P S W
Sbjct: 1942 SLAAPTPGARGPDPSSPDKAKLAVEKGRKARKLRGPKEPGFEAGP-----EASDDDLWTR 1996
Query: 202 PRPCSSRC-TGEAVSAVACSTGASPATWRSSVAPSDGCS----LSREEDQDDPGDVKKGK 256
R S R +A +A +PAT S A S R +D+ DP KKGK
Sbjct: 1997 RR--SERIFLHDASAAAPAPVSTAPATKTSRCAKGGPLSPRKDAGRAKDRKDPRKKKKGK 2054
Query: 257 SSLHITSGVFPGLAVPLNPWLP 278
+G GL P P LP
Sbjct: 2055 E-----AGPGAGLPPPRAPALP 2071
Score = 31.6 bits (70), Expect = 1.8
Identities = 39/161 (24%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 37 GFLSSSLFSEDLFSAALSPSEGPSVS-----------SASFSAGASPAPGADSTTSAGVS 85
G SSS S S EG SA+ S ASPA + S++S+ S
Sbjct: 2566 GSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSS 2625
Query: 86 GGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEA 145
SS S + SS+ + S SS S + + + EA
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEA 2685
Query: 146 APPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASP 186
AP A PS A+L + + ++R P+ P
Sbjct: 2686 APAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQP 2726
Score = 30.8 bits (68), Expect = 3.1
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 57 EGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAV----LAPSPFSSLG 112
EG +A + A G SA G ++ G P+ V LA P S+ G
Sbjct: 2313 EGKDGGTAGSEEPGAKARGRGRKPSAKAKGDRAATLEEG-NPTDEVPSTPLALEPSSTPG 2371
Query: 113 SWR--PCAFRWRLRVPRNLKLFPQVSQA--SFCSCEAAPPAPASPSPSASLKSMSLVAKS 168
S + P R + P+ PQ S A +F SC A P P+P+ SL L+
Sbjct: 2372 SKKSPPEPVDKRAKAPKARPAPPQPSPAPPAFTSCPAPEPFAELPAPATSLAPAPLITMP 2431
Query: 169 RSR 171
+R
Sbjct: 2432 ATR 2434
>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 38.9 bits (89), Expect = 0.011
Identities = 48/197 (24%), Positives = 64/197 (32%), Gaps = 66/197 (33%)
Query: 119 FRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDAS 178
F +P+N+ ++ S+ PA PS A+ S + ++ SR S
Sbjct: 24 FMCMFSLPQNMAIWGSASR------------PALPSVGAAPTSSARAVQAASR------S 65
Query: 179 SSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVS------AVACSTGASP------- 225
S+ P + L P + W PRPCS+R AVS + ACS P
Sbjct: 66 SAKPGSIATLRGAPSALLCEWDPPRPCSARAATAAVSRGPRARSSACSRLPLPRKLTEPE 125
Query: 226 -------------------ATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGVF 266
R AP C+ SR E P
Sbjct: 126 RGGGAQSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPA---------------- 169
Query: 267 PGLAVPLNPWLPLPPPP 283
P A PL P P PPP
Sbjct: 170 PTGAAPLAPPAPHAPPP 186
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 38.9 bits (89), Expect = 0.011
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 36/166 (21%)
Query: 99 SSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCS----------CEAAPP 148
S+ V+ PS + +WRP A +R P P + A+ C C A+PP
Sbjct: 81 SAPVVVPSALTRAVAWRPAAAPAAVRPPAAGP--PAAAPAAVCPAAADPSAASLCAASPP 138
Query: 149 A------------PASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSS 196
A PA+ P+A+L ++ A D S+++ A+ L++VP ++S
Sbjct: 139 AAVPAAVPAAVRPPAAGPPAAALAAVYPAA--------ADPSAASLCAASPLAAVPAAAS 190
Query: 197 GSWLSPRPCSSRCTGEA-VSAVACSTGASPATWRSSVAPSDGCSLS 241
+ ++P ++ C G A SA + + PA ++ +P+ L+
Sbjct: 191 PAAVAP---AAVCPGAAGPSAASLCAASQPAAVPAAASPAAAAPLA 233
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 38.5 bits (88), Expect = 0.015
Identities = 47/174 (27%), Positives = 63/174 (36%), Gaps = 31/174 (17%)
Query: 72 PAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKL 131
P P + S +AG +G S +G P S G+ P R R L
Sbjct: 29 PPPPSPSAAAAGAAGARGSETG------------DPGSPRGAEEPGKKRHERLFHRQDAL 76
Query: 132 FPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLD---------ASSSAP 182
+ S A E PPA SP+P++ + +S R LW + + P
Sbjct: 77 WISTSSAGTGGAE--PPA-LSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKP 133
Query: 183 SASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATW--RSSVAP 234
+P S P SS SW P P G A + S+ P T R VAP
Sbjct: 134 GGAPTSSRRPLLSSPSWGGPEP-----EGRAGGGIPGSSSPHPGTGSRRLKVAP 182
Score = 30.4 bits (67), Expect = 4.0
Identities = 63/231 (27%), Positives = 84/231 (36%), Gaps = 50/231 (21%)
Query: 56 SEG-PSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAV---LAPS----- 106
SEG P V + SAG + A +T +A GG ++ + G G + L+P
Sbjct: 215 SEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGARGKLSPRKGKSK 274
Query: 107 --PFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQA-SFCSCEAAPPAPASP----SPSASL 159
S L P P L L P S A + + A PP PA P P+ L
Sbjct: 275 TLDNSDLHPGPPAG------SPPPLTLPPTPSPATAVTAASAQPPGPAPPITLEPPAPGL 328
Query: 160 KSMSLVAKSRSR--------LWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTG 211
K ++ +R + S+ P S L P SSGS SR
Sbjct: 329 KRGREGGRASTRDRKMLKFISGIFTKSTGGPPGSGPLPGPPSLSSGS-------GSR--- 378
Query: 212 EAVSAVACSTGASPATWRSSVAPSDGCSLSR---EEDQDDPGDVKKGKSSL 259
+ ASP +V S +LSR E GD + GKSSL
Sbjct: 379 ---ELLGAELRASP----KAVINSQEWTLSRSIPELRLGVLGDARSGKSSL 422
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 38.5 bits (88), Expect = 0.015
Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 41/234 (17%)
Query: 52 ALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSL 111
AL+P+ G S S + S G G T + ++ P+S+ L P+P +L
Sbjct: 1686 ALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLT------------PASS-LVPTPAQTL 1732
Query: 112 GSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPP-APASPSPSASLKSMSLVAKSRS 170
+L P + S APP APASP A +++L S S
Sbjct: 1733 ----------------SLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSS 1776
Query: 171 RLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRC-TGEAVSAVACSTGASPATWR 229
L AS + SP ++ L+ P S++ +A S V ++GA+P
Sbjct: 1777 ASLLAPASVQTLTLSPAPVPTLGPAAAQTLALAPASTQSPASQASSLVVSASGAAP---- 1832
Query: 230 SSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPP 283
+ + L +D+ D ++ G S T+ F G P PPPP
Sbjct: 1833 --LPVTMVSRLPVSKDEPDTLTLRSGPPSPPSTATSFGGPRPRRQP----PPPP 1880
Score = 33.9 bits (76), Expect = 0.36
Identities = 98/427 (22%), Positives = 149/427 (34%), Gaps = 48/427 (11%)
Query: 50 SAALSPS-EGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPF 108
SA L+ S GP++ ++ A P A S SG S S G ++A PS
Sbjct: 1460 SAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGLATA---PSLS 1516
Query: 109 SSLGSWRPCAFR-WRLRVPR-NLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVA 166
SS P VP N + P S + A P P++P+P+ + S+ A
Sbjct: 1517 SSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQASLLAPA 1576
Query: 167 KSRSR--------LWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVA 218
S S+ + + APS +P L+ +P + +P SS+ T V A +
Sbjct: 1577 SSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQ-TPVPVMAPS 1635
Query: 219 CSTGASPATWRSSVAPSDGCSLSREEDQ---DDPGDVKKGKSSLHITSGVFPGLAVPLNP 275
+ G S A+ AP+ + S + P + S+ T + P LA L
Sbjct: 1636 STPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQ--TLALAPALAPTLGG 1693
Query: 276 WLPLPP-------PPGRNGLNLLVSVVASIFSMLANSPLESRSTPPLLARGRLLIPLFRP 328
P P G L AS L PPL L + P
Sbjct: 1694 SSPSQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPP 1753
Query: 329 LFFDVPAGPC-------SVGEAASGLLAGAG--------GSLDSFGLVVAAGVAVVAALG 373
L P GP + +++ LLA A + + G A +A+ A
Sbjct: 1754 LAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVPTLGPAAAQTLALAPAST 1813
Query: 374 TEPPKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGSSSVTGGFGKSSGG 433
P + ++V+ A P T+V ++D + + S FG
Sbjct: 1814 QSPASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTLTLRSGPPSPPSTATSFG----- 1868
Query: 434 LGRRPCR 440
G RP R
Sbjct: 1869 -GPRPRR 1874
Score = 29.6 bits (65), Expect = 6.9
Identities = 71/261 (27%), Positives = 100/261 (38%), Gaps = 56/261 (21%)
Query: 176 DASSSAPSASPVLSS----VPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSS 231
+ S+SAP A+P+ S VP S G SP P + S ASP + S
Sbjct: 1384 EVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPN-----------SSPLASPVSSTVS 1432
Query: 232 VAPSDGCSLSREEDQDDPGD----------VKKGKSSLHITSGVFPGLAVPLNPWLPLPP 281
V S +S P + S + + V P LA P+ P P PP
Sbjct: 1433 VPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLA-PVVPAAPGPP 1491
Query: 282 PPGRNGLNLLVSVVASIFSM-LANSP-LESRSTP--PLL-----------------ARGR 320
+G S AS ++ LA +P L S TP PLL A
Sbjct: 1492 SLAPSG----ASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSP 1547
Query: 321 LLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGLVVAAGVAVVAALGTEPPKLS 380
+L+P L P+ P + A + LLA A + + +A A A+ P +
Sbjct: 1548 VLVPA-SALASPFPSAP-NPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSP--A 1603
Query: 381 EAVVLLPVLA-GPGSATLVFS 400
+ LPVLA PG+A ++ S
Sbjct: 1604 PPLAPLPVLAPSPGAAPVLAS 1624
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 38.1 bits (87), Expect = 0.019
Identities = 56/239 (23%), Positives = 86/239 (35%), Gaps = 30/239 (12%)
Query: 34 SVFGFLSSSLFSEDLFSAALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSG 93
S G+ S++ + S P P A+ G +P A TT + S ++
Sbjct: 344 SPMGWSSAAPCTAAAASHPAVPPSAPDPRPATPQGGGAPRVAAPQTTLSSSSTSAATVDP 403
Query: 94 AGWGPSSA-----------VLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCS 142
W PS++ A P +SL P + + + QA
Sbjct: 404 PAWTPSASRTQQARNKFFQTSAVPPGTSLSGRGPTPSLVLSKDSSKEQARNFLKQALSAL 463
Query: 143 CEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVP--CSSSGSWL 200
EA PAP PSP+ + V S+ + +A ++P A P+ SS P
Sbjct: 464 EEAGAPAPGRPSPAT-----AAVPSSQPK---TEAPQASPLAKPLQSSSPRVLGLPSRME 515
Query: 201 SPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSLSREEDQDDP-GDVKKGKSS 258
P P S+ T +A A P R ++A S G + P + KGKS+
Sbjct: 516 PPAPLSTSSTSQA--------SALPPAGRRNLAESSGVGRVGAGSRPKPEAPMAKGKST 566
Score = 34.7 bits (78), Expect = 0.21
Identities = 58/238 (24%), Positives = 90/238 (37%), Gaps = 42/238 (17%)
Query: 51 AALSPSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSS 110
+A P+ G S + AS A +P P A S TS V PS + LAP+P +
Sbjct: 285 SAWEPAAGNSPARASVPA--APNPAATSATSVHVRSPAR--------PSESRLAPTP--T 332
Query: 111 LGSWRP-----CAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLV 165
G RP W P A+ S A PP+ P P A+ +
Sbjct: 333 EGKVRPRVTNSSPMGWSSAAP---------CTAAAASHPAVPPSAPDPRP-ATPQGGGAP 382
Query: 166 AKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASP 225
+ + L +S+SA + P +W P +SR T +A + ++ P
Sbjct: 383 RVAAPQTTLSSSSTSAATVDP----------PAW---TPSASR-TQQARNKFFQTSAVPP 428
Query: 226 ATWRSSVAPSDGCSLSREEDQDDPGD-VKKGKSSLHITSGVFPGLAVPLNPWLPLPPP 282
T S P+ LS++ ++ + +K+ S+L PG P +P P
Sbjct: 429 GTSLSGRGPTPSLVLSKDSSKEQARNFLKQALSALEEAGAPAPGRPSPATAAVPSSQP 486
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 38.1 bits (87), Expect = 0.019
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 21/145 (14%)
Query: 126 PRNLKLFPQVS--QASFCSCE------AAPPAPASPSPSASLKSMSLVAKSRSRLWLLDA 177
P+N + PQ + Q S CE AA P +P+P A + R+ +
Sbjct: 2080 PKN-GVLPQATGDQKSGGKCETDRRMVAARTEPLTPNP----------ASKKPRVHKRGS 2128
Query: 178 SSSAPSASPVLSSVPCSSSGSWLSPRPCS-SRCTGEAVSAVACSTGASPATWRSSVAPSD 236
SS+ S S S S S S S CS SR + S+ +CS+ +S ++ +S + S
Sbjct: 2129 ESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSS 2188
Query: 237 GCSLSREEDQDDPGDVKKGKSSLHI 261
S S E D D+ + +K +S+ H+
Sbjct: 2189 SSSSSEESDSDEE-EAQKRESTTHM 2212
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 37.4 bits (85), Expect = 0.033
Identities = 84/321 (26%), Positives = 114/321 (35%), Gaps = 50/321 (15%)
Query: 153 PSPSASLKSMSLVAKSRSRLWLLDASSSAPS------ASPVLSSVPCSSS-GSWLSPRPC 205
P PSAS SL+++ RS W + P+ A P S+ P SS+ ++ P
Sbjct: 102 PGPSAS----SLLSQFRSPSWQTAMHTPGPTELFISGALPGSSTFPSSSALSAYQHPASF 157
Query: 206 SSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSLSREEDQDDPGDV---KKGKSSLHIT 262
SR S SP ++P D L + P + + +
Sbjct: 158 GSRPFPVPSSLSLQDPPFSPPA-NGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGP 216
Query: 263 SGVFPGLAVPLNPWLPLPPPPGRN---GLNLLVSVVASIFSMLANSPL------ESRSTP 313
+G+ P P P P PPPP R+ NLL S A+ + +SP + P
Sbjct: 217 AGLGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPP 276
Query: 314 P---LLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLAGAGGSLDSFGLVVAAGVAVVA 370
P L R +I ++ P P A L+ GGS S G A +A
Sbjct: 277 PPERALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLS-CGGSYPSMGH--RANLACSP 333
Query: 371 ALGTEP-PKLSEAVVLLPVLAGPGSATLVFSRVGAEDTDEMIWAMEASGGSSSVT----- 424
G EP P E P AGP AT S G E A GG
Sbjct: 334 LGGGEPSPGAGE-----PSKAGPSGATAGAS--GRATGPEAAGGGGAGGGGGGYRPIIQS 386
Query: 425 -------GGFGKSSGGLGRRP 438
GG+G ++GG R P
Sbjct: 387 PGYKTGKGGYGAAAGGATRPP 407
Score = 32.7 bits (73), Expect = 0.81
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 55 PSEGPSVSSA-SFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSA 101
PS G + A S G P+PGA + AG SG + SG GP +A
Sbjct: 321 PSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAA 368
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 37.0 bits (84), Expect = 0.043
Identities = 49/221 (22%), Positives = 73/221 (33%), Gaps = 43/221 (19%)
Query: 55 PSEGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAG--------WGPSSAVLAPS 106
PS G +V+ S SA S GA +TT+AG S +S + +G GP+ P
Sbjct: 398 PSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGPAPGFPFPP 457
Query: 107 PFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVA 166
P+ + P AF PP P P+ A L L A
Sbjct: 458 PWMGMPLPPPFAF---------------------------PPMPVPPAGFAGLTPEELRA 490
Query: 167 KSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLS-------PRPCSS-RCTGEAVSAVA 218
L+A + L +L+ PRP +S T E + V
Sbjct: 491 LEGHERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSVNSTEETATTVV 550
Query: 219 CSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSL 259
+ ++ + P+ G S E + P G +
Sbjct: 551 AAASSTSIPSSEATTPTPGASPPAPEMERPPAPESVGTEEM 591
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 37.0 bits (84), Expect = 0.043
Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 22/183 (12%)
Query: 57 EGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRP 116
+ SS S+S +S S S+G S SC +G + + + S+ SW+
Sbjct: 193 QSSGTSSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQS 252
Query: 117 CAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLD 176
+S CSC+++ + S S +S S + +S
Sbjct: 253 SR------------------TSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGT----S 290
Query: 177 ASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSD 236
++S + +S S+ C S + + C S T S + T ++ SS S
Sbjct: 291 STSCSCQSSRTSSTCSCQFSRTSSTSCSCQSSRTSSTCSCQSSGTSSTSCICWSSGTSST 350
Query: 237 GCS 239
CS
Sbjct: 351 SCS 353
Score = 35.4 bits (80), Expect = 0.13
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 17/202 (8%)
Query: 40 SSSLFSEDLFSAALSPSEGPSVSSAS--FSAGASPAPGADSTTSAGVSGGFSSCSGAGWG 97
S S S + S S G S +S S FS +S S TS+ SC +
Sbjct: 74 SCSCQSSETSSTCSCQSSGTSSTSCSWQFSRTSSTCCCQSSRTSSTSC----SCQSSRTS 129
Query: 98 PSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSA 157
+S S SS S + R + +S CSC+++ + S + +
Sbjct: 130 STSCSCQSSRTSSTCSCQTS------RTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQS 183
Query: 158 SLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAV 217
S S + +S ++S + +S S+ C SSG+ + C S T S
Sbjct: 184 SRTSSTCSCQSSGT----SSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQ 239
Query: 218 ACSTGASPATWRSSVAPSDGCS 239
+ T ++ +W+SS S CS
Sbjct: 240 SSGTSSTSCSWQSS-RTSSTCS 260
Score = 32.3 bits (72), Expect = 1.1
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 136 SQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSS 195
+ +S CSC+++ + S+ S S + + SS S S+ C S
Sbjct: 13 ASSSSCSCQSSQTSSTCSCQSSQTSSTCSCQSSGTSSTSCNWQSSRTS-----STCSCQS 67
Query: 196 SGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSDGCSLS 241
SG+ + C S T S + T ++ +W+ S S C S
Sbjct: 68 SGTSSTSCSCQSSETSSTCSCQSSGTSSTSCSWQFSRTSSTCCCQS 113
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 138 ASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSG 197
+S CSC+++ + S S +S S + +S ++S + +S S+ C SSG
Sbjct: 210 SSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGT----SSTSCSWQSSRTSSTCSCQSSG 265
Query: 198 SWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSD-GCSLSR 242
+ + C S T S + T ++ + +SS S C SR
Sbjct: 266 TSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSR 311
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 37.0 bits (84), Expect = 0.043
Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 22/183 (12%)
Query: 57 EGPSVSSASFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRP 116
+ SS S+S +S S S+G S SC +G + + + S+ SW+
Sbjct: 193 QSSGTSSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQS 252
Query: 117 CAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLD 176
+S CSC+++ + S S +S S + +S
Sbjct: 253 SR------------------TSSTCSCQSSRTSSTSCSCQSSGTSSTCSCQSSGT----S 290
Query: 177 ASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAPSD 236
++S + +S S+ C S + + C S T S + T ++ SS S
Sbjct: 291 STSCSCQSSRTSSTCSCQFSRTSSTSCSCQSSRTSSTCSCQSSGTSSTSCICWSSGTSST 350
Query: 237 GCS 239
CS
Sbjct: 351 SCS 353
Score = 36.6 bits (83), Expect = 0.056
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 17/206 (8%)
Query: 40 SSSLFSEDLFSAALSPSEGPSVSSAS--FSAGASPAPGADSTTSAGVSGGFSSCSGAGWG 97
S S S + S S G S +S S FS +S S TS+ SC +
Sbjct: 74 SCSCQSSETSSTCSCQSSGTSSTSCSWQFSRTSSTCRCQSSRTSSTSC----SCQSSRTS 129
Query: 98 PSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSA 157
+S S SS S + R + +S CSC+++ + S + +
Sbjct: 130 STSCSCQSSRTSSTCSCQTS------RTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQS 183
Query: 158 SLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCSSRCTGEAVSAV 217
S S + +S ++S + +S S+ C SSG+ + C S T S
Sbjct: 184 SRTSSTCSCQSSGT----SSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQ 239
Query: 218 ACSTGASPATWRSSVAPSD-GCSLSR 242
+ T ++ +W+SS S C SR
Sbjct: 240 SSGTSSTSCSWQSSRTSSTCSCQSSR 265
Score = 31.6 bits (70), Expect = 1.8
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 136 SQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSS 195
+ +S CSC+++ + S+ S S + ++S +S + S+ C S
Sbjct: 13 ASSSSCSCQSSQTSSTCSCQSSQTSSTCSCQSSGT-----SSTSCNWQSSRISSTCSCQS 67
Query: 196 SGSWLSPRPCSSRCTGEAVSAVACSTGASPATWR-SSVAPSDGCSLSR 242
SG+ + C S T S + T ++ +W+ S + + C SR
Sbjct: 68 SGTSSTSCSCQSSETSSTCSCQSSGTSSTSCSWQFSRTSSTCRCQSSR 115
Score = 29.3 bits (64), Expect = 9.0
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 138 ASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSG 197
+S CSC+++ + S S +S S + +S SS++ S +S CS
Sbjct: 210 SSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSG------TSSTSCSWQSSRTSSTCSCQS 263
Query: 198 SWLSPRPCSSRCTGEAVSAVACSTGASPAT---WRSSVAPSDGCSLSR 242
S S CS + +G + + S+G S + S + + C SR
Sbjct: 264 SRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSR 311
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 37.0 bits (84), Expect = 0.043
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 27/146 (18%)
Query: 147 PPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSSGSWLSPRPCS 206
PP AS P+A S +AKS S+ LL A+++A +SG +PR
Sbjct: 47 PPGHASAGPAAM---SSHIAKSESKTSLLKAAAAA-------------ASGGSRAPRHGP 90
Query: 207 SRCTGEAVSAVACSTGASPATWRSSVAPSDGCSLSREEDQDDPGDVKKGKSSLHITSGVF 266
+R G + G+ PAT +SS PS L R +++ +G + +
Sbjct: 91 ARDPGLPSRRL---PGSCPATPQSSGDPSSRRPLCRPAPREEGA---RGSQRVLPQAHCR 144
Query: 267 PGLAVPL-----NPWLPLPPPPGRNG 287
P A+P +P PLPP GR+G
Sbjct: 145 PREALPAAASRPSPSSPLPPARGRDG 170
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 37.0 bits (84), Expect = 0.043
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 177 ASSSAPSASPVLSSVPC--SSSGSWLSPRPCSSRCTGEAVSAVACSTGASPATWRSSVAP 234
A ++A +A+ V + P ++GS P +++ +AV+A + A+ A S AP
Sbjct: 430 AVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAP 489
Query: 235 S--DGCSLSREE----DQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNG 287
DG ++E ++ P + +G G L PL P P PPPP R G
Sbjct: 490 EPLDGAEPAKESGLGAEERCPSALSRGPLD---EDGTDEALPPPLAPLPPPPPPPARKG 545
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,070,087
Number of Sequences: 37866
Number of extensions: 1262323
Number of successful extensions: 9730
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 357
Number of HSP's that attempted gapping in prelim test: 8538
Number of HSP's gapped (non-prelim): 1234
length of query: 513
length of database: 18,247,518
effective HSP length: 107
effective length of query: 406
effective length of database: 14,195,856
effective search space: 5763517536
effective search space used: 5763517536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.