Guide to the Human Genome
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Search of human proteins with 239748756

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
         (647 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...  1338   0.0  
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...  1337   0.0  
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     60   5e-09
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          60   6e-09
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi...    60   6e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    58   3e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    58   3e-08
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             56   9e-08
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]            54   3e-07
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ...    54   3e-07
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ...    54   3e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      54   4e-07
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ...    54   4e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      53   1e-06
gi|182507165 thymus expressed gene 3-like [Homo sapiens]               53   1e-06
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    52   1e-06
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            52   2e-06
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]        52   2e-06
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            52   2e-06
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                52   2e-06
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]      51   3e-06
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]       51   3e-06
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       51   3e-06
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       51   3e-06
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]       51   3e-06
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]       51   3e-06
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]        51   3e-06
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]        51   3e-06
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]        51   3e-06
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]        51   3e-06

>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 1338 bits (3462), Expect = 0.0
 Identities = 647/647 (100%), Positives = 647/647 (100%)

Query: 1   MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60
           MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV
Sbjct: 1   MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60

Query: 61  GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120
           GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF
Sbjct: 61  GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120

Query: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180
           PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA
Sbjct: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180

Query: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240
           LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA
Sbjct: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240

Query: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300
           AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG
Sbjct: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300

Query: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360
           AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR
Sbjct: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360

Query: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
           TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP
Sbjct: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420

Query: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480
           GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR
Sbjct: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480

Query: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540
           GCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRNGVDYT
Sbjct: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540

Query: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600
           TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN
Sbjct: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600

Query: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647
           FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS
Sbjct: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 1337 bits (3459), Expect = 0.0
 Identities = 646/647 (99%), Positives = 647/647 (100%)

Query: 1   MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60
           MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV
Sbjct: 1   MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60

Query: 61  GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120
           GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF
Sbjct: 61  GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120

Query: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180
           PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA
Sbjct: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180

Query: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240
           LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA
Sbjct: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240

Query: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300
           AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG
Sbjct: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300

Query: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360
           AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR
Sbjct: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360

Query: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
           TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP
Sbjct: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420

Query: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480
           GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR
Sbjct: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480

Query: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540
           GCLRSARSSPHARPLGSSRSVRLLRSAAG+GPSLDSREVRVLIERGCQWWFLSRNGVDYT
Sbjct: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540

Query: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600
           TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN
Sbjct: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600

Query: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647
           FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS
Sbjct: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 88/326 (26%), Positives = 110/326 (33%), Gaps = 68/326 (20%)

Query: 174 APAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGA 233
           AP    A G+D  +   G  GP    G         P  P A  P G +           
Sbjct: 227 APGPAGARGSDGSVGPVGPAGPIGSAG--------PPGFPGAPGPKGEIG--------AV 270

Query: 234 GRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFS 292
           G AG    A G RG +  P LSG V       P   P    +  A      A LP  G +
Sbjct: 271 GNAGPAGPA-GPRGEVGLPGLSGPVG------PPGNPGANGLTGAKG---AAGLP--GVA 318

Query: 293 GRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGC 352
           G P    G    RG  G   A G   ARG   +P    +       G   ++  +   G 
Sbjct: 319 GAP----GLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGP 374

Query: 353 AHQDGQRRTRDGAGNHASE-PARVWSPPPRRQRPRRLPRASLQEEPKRR----PPCAR-- 405
           + ++G+R     AG+     P  +   P  R  P    RA +   P  R    P   R  
Sbjct: 375 SGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGP 434

Query: 406 ---------------------PSGAGPA-REGPAAWPGGAPTPPHARPTGRRQDPE---- 439
                                P   GPA +EGP   PG    P    P G R +P     
Sbjct: 435 NGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGF 494

Query: 440 PGPRAPRGGPASSG--WHAGSAAGRG 463
           PGP+ P G P  +G   HAG A  RG
Sbjct: 495 PGPKGPTGDPGKNGDKGHAGLAGARG 520



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 101/368 (27%), Positives = 114/368 (30%), Gaps = 58/368 (15%)

Query: 136  GSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA--LGTDEPLALRGQC 193
            G +G     G  GQ      R A     + G   P  P  AAG A   G   P   RG  
Sbjct: 721  GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG 780

Query: 194  GPAARRGCAQEQLRNAPWAPRAHS-------PAGRLALGLIAPRRGAGRAGAGAAACGRR 246
            GP    G      R  P  P   S       PAG+   GL  PR   G  G       R 
Sbjct: 781  GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKE--GLRGPRGDQGPVG-------RT 831

Query: 247  GRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRG 306
            G +     G V    +   K      S  +  A P G   P+ G  G P    G     G
Sbjct: 832  GEV-----GAVGPPGFAGEKGP----SGEAGTAGPPGTPGPQ-GLLGAP----GILGLPG 877

Query: 307  SRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRT----- 361
            SRGE    GV  A G            AR   G   +       G A +DG         
Sbjct: 878  SRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPG 937

Query: 362  RDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPARE-GPAA-- 418
            RDG   H  E          R  P  +        P    P       G   E GP+   
Sbjct: 938  RDGQPGHKGE----------RGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPV 987

Query: 419  WPGGAPTPPH-ARPTGRRQDP-EPGPRAPRGGPASSGWHAG-----SAAGRGWDPGGGSR 471
             P GA  P   + P G R D  EPG + PRG P   G H G       AG   D G    
Sbjct: 988  GPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKG-HNGLQGLPGIAGHHGDQGAPGS 1046

Query: 472  ARRRAARG 479
                  RG
Sbjct: 1047 VGPAGPRG 1054



 Score = 38.5 bits (88), Expect = 0.019
 Identities = 92/368 (25%), Positives = 114/368 (30%), Gaps = 43/368 (11%)

Query: 134 LLGSHGGRRSCGREGQG--RGGRRRRAADTLFQLGPAWPALPAPAAGRA-----LGTDEP 186
           L GS G R   G +G+    G    R A      GPA    P   AGR      +G    
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGSRGAS-----GPAGVRGPNGDAGRPGEPGLMGPRGL 452

Query: 187 LALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLA----LGLIAPRRGAGRAGAG--- 239
               G  GPA + G     L      P    PAG       +G   P+   G  G     
Sbjct: 453 PGSPGNIGPAGKEGPVG--LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDK 510

Query: 240 --AAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRG 297
             A   G RG      +   Q      P+ +            P    LP  G SG P G
Sbjct: 511 GHAGLAGARGAPGPDGNNGAQGPP--GPQGVQGGKGEQGPPGPPGFQGLP--GPSG-PAG 565

Query: 298 RGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDG 357
             G    RG  GE    G    RG    P  + A      AG T         G    DG
Sbjct: 566 EVGKPGERGLHGEFGLPGPAGPRGERGPPGESGA------AGPTGPIGSRGPSGPPGPDG 619

Query: 358 QRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPA 417
            +      G   +      S  P  +    +P      + ++  P  R     P R+G  
Sbjct: 620 NKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGG----KGEKGEPGLRGEIGNPGRDGAR 675

Query: 418 AWPGGAPTPPHARPTGRRQDP----EPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRAR 473
             PG    P  A  TG R +       GP  PRG P   G   G A   G+    G+  +
Sbjct: 676 GAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG-EVGPAGPNGFAGPAGAAGQ 734

Query: 474 RRAARGRG 481
             A   RG
Sbjct: 735 PGAKGERG 742



 Score = 31.6 bits (70), Expect = 2.4
 Identities = 36/123 (29%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 392 SLQEEPKRRPPCARPSGAGPARE-GPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPA 450
           SLQEE  R+ P       GP  E GP   PG         PTG      PGP  P G P 
Sbjct: 24  SLQEETVRKGPAG---DRGPRGERGPPGPPG---RDGEDGPTG-----PPGPPGPPGPPG 72

Query: 451 SSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGR 510
             G  A    G+G   G G           G   +        P G          A  R
Sbjct: 73  LGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGAR 132

Query: 511 GPS 513
           GP+
Sbjct: 133 GPA 135


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 113/411 (27%), Positives = 146/411 (35%), Gaps = 95/411 (23%)

Query: 254 SGVVQK--ASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
           +G +Q+   +YL    L +L S+P     P  AA              GAA  RGS    
Sbjct: 5   AGALQRRTTTYLISLTLVKLESVPPPPPSPSAAA-------------AGAAGARGSETGD 51

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
           P    G  RG A +P          R    W S   A  G A                + 
Sbjct: 52  P----GSPRG-AEEPGKKRHERLFHRQDALWISTSSAGTGGAEPPALSPA-------PAS 99

Query: 372 PARVWSPPPRRQR------PRRLPRASLQEEPK--------RRPPCARPSGAGPAREGPA 417
           PAR  SP P R+       P       L  +PK        RRP  + PS  GP  EG A
Sbjct: 100 PARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRA 159

Query: 418 AWPGGAP--TPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRR 475
              GG P  + PH     RR    P P AP+  P  +   +G+ AG G   G GSR    
Sbjct: 160 G--GGIPGSSSPHPGTGSRRLKVAPPPPAPK--PCKTVTTSGAKAGGG--KGAGSRLSWP 213

Query: 476 AARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRN 535
            + G+  ++ ++SS      G+S S     +AAG G S  S    V    G +       
Sbjct: 214 ESEGKPRVKGSKSSAGT---GASVSAAATAAAAGGGGSTASTSGGVGAGAGAR------- 263

Query: 536 GVDYTTGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDP--TPPDSRQLRS 593
                 G  S ++G ++  L   DL PG               G P P   PP       
Sbjct: 264 ------GKLSPRKGKSKT-LDNSDLHPGPPA------------GSPPPLTLPPT------ 298

Query: 594 LWPSMRNFPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSR 644
             PS     T      +S  PPGPA   P      +PG+ R     RA +R
Sbjct: 299 --PSPATAVTA-----ASAQPPGPA--PPITLEPPAPGLKRGREGGRASTR 340


>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
           sapiens]
          Length = 496

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 66/198 (33%), Positives = 77/198 (38%), Gaps = 24/198 (12%)

Query: 278 AARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPAC----GVGLARGTA-----PQPAS 328
           AAR  G  L    +  RP+  GG   GR   GE P+     G   A G+A     P P  
Sbjct: 8   AARRLGPCL--RAYQARPQVSGGEEGGRRGGGERPSSKPVRGAERALGSAQAQRHPPPLP 65

Query: 329 TWALAARPRAG--GTWTSRFEAQRG-CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRP 385
           T AL    R G  G    R  A R   +   G R  R G G  A    RV   P   + P
Sbjct: 66  TCALQRVDRLGVAGAGGRRCRACRARTSVLPGLRAVRRGQGQAAG---RVCVAPDSPRLP 122

Query: 386 RRLPRASLQEEPKR-RPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRA 444
             +PR  L+   +  R P A PS + PA+  PA    G P  P     G R   E  P  
Sbjct: 123 --VPRGDLKGRGREIRSPAAAPSRSSPAQTRPA----GRPQQPARLALGERSWQEGRPVC 176

Query: 445 PRGGPASSGWHAGSAAGR 462
            R GP   GW  G A  R
Sbjct: 177 TRFGPLRPGWQDGHAPSR 194


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 129/504 (25%), Positives = 161/504 (31%), Gaps = 73/504 (14%)

Query: 134  LLGSHGGRRSCGREG-QGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQ 192
            + G  G R   G +G +G  G+      T    GP  P  PA A G       P    G 
Sbjct: 760  IAGPKGDRGDVGEKGPEGAPGKDGGRGLT----GPIGPPGPAGANGEKGEVGPP----GP 811

Query: 193  CGPAARRGCAQEQLRNAPWAPRAHS-PAGRLALGLIAPRRGAGRAG--AGAAACGRRGRI 249
             G A  RG   E+    P  P   + P G  A G    +   G AG    A A G +G  
Sbjct: 812  AGSAGARGAPGERGETGPPGPAGFAGPPG--ADGQPGAKGEQGEAGQKGDAGAPGPQGPS 869

Query: 250  AAP----LSGVVQKASYLRPKNLPRLLSMPSAAAR---PCGAALPRSGFSGRPRGRGGAA 302
             AP     +GV         +  P     P AA R   P     P       P G+ G  
Sbjct: 870  GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 929

Query: 303  AGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT---SRFEAQRGCAHQDGQR 359
              RG  G     G    +G A  P           +G            QRG     GQR
Sbjct: 930  GARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR 989

Query: 360  RTRD--GAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPA 417
              R   G    + EP +  +P     R                PP   P G  P   GPA
Sbjct: 990  GERGFPGLPGPSGEPGKQGAPGASGDRG---------------PP--GPVGP-PGLTGPA 1031

Query: 418  AWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAA 477
              PG   +P    P GR  D   G +  RG   + G  A  A G    PG      ++  
Sbjct: 1032 GEPGREGSPGADGPPGR--DGAAGVKGDRGETGAVG--APGAPGPPGSPGPAGPTGKQGD 1087

Query: 478  RGRGCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWW--FLSRN 535
            RG    +         P+G S           +GP  D  E     ERG +    F    
Sbjct: 1088 RGEAGAQG--------PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1139

Query: 536  GVDYTTGPRSEQ--RGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRS 593
            G+    GP  +Q   G A    PR    PG     +    +    G+P P  P       
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSGPRGP--PG----PVGPSGKDGANGIPGPIGPPG----- 1188

Query: 594  LWPSMRNFPTGHCRGISSPSPPGP 617
              P  R+  TG      +P PPGP
Sbjct: 1189 --PRGRSGETGPAGPPGNPGPPGP 1210



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 116/435 (26%), Positives = 142/435 (32%), Gaps = 77/435 (17%)

Query: 136  GSHGGRRSCGREGQ-GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG 194
            G  G R + G  G  G  G   R         P  P  P P+     G D P   RG  G
Sbjct: 882  GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS-----GKDGPKGARGDSG 936

Query: 195  PAARRGCAQEQLRNAP----WAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIA 250
            P  R G    Q    P      P    P+G  A G   P+  AG+ G      G+RG   
Sbjct: 937  PPGRAGEPGLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGI-VGLPGQRGERG 993

Query: 251  AP-LSGVVQKASYLRPKNLPRLLSMPSAAAR--------PCGAALP-----RSGFSGR-- 294
             P L G         P   P     P A+          P G   P     R G  G   
Sbjct: 994  FPGLPG---------PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADG 1044

Query: 295  PRGRGGAAAGRGSRGEHPACGVGLARGT--APQPAS-TWALAARPRAGGTWTSRFEAQRG 351
            P GR GAA  +G RGE  A G   A G   +P PA  T     R  AG           G
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1104

Query: 352  CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGP 411
                 G +  R   G  A EP         R          LQ  P    P      +GP
Sbjct: 1105 ARGIQGPQGPRGDKG-EAGEPG-------ERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1156

Query: 412  AREGPAAWPGGAPTP--------------PHARPTGRRQDPEPGPRAPRG--------GP 449
            A  GP+  P G P P              P   P  R +  E GP  P G        GP
Sbjct: 1157 A--GPSG-PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP 1213

Query: 450  ASSGWHAGSAAGRG-WDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAA 508
               G    + AG G  + G       RA +  G LR   +   A     +  +  +RS  
Sbjct: 1214 PGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPE 1273

Query: 509  G--RGPSLDSREVRV 521
            G  + P+   R++++
Sbjct: 1274 GSRKNPARTCRDLKL 1288



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 93/342 (27%), Positives = 111/342 (32%), Gaps = 82/342 (23%)

Query: 167 PAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGL 226
           P  P +  P   R  G   P    G  G A + G A E  R  P    A    G   L  
Sbjct: 230 PGEPGVSGPMGPR--GPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTPGLPG 285

Query: 227 IAPRRG-AGRAGAG--AAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
           +   RG  G  GA   A A G +G   +P  G       + P+ LP              
Sbjct: 286 VKGHRGYPGLDGAKGEAGAPGVKGESGSP--GENGSPGPMGPRGLP-------------- 329

Query: 284 AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT 343
                 G  GR  G  GAA  RG+ G+    G     G A  P    A  A+  AG T  
Sbjct: 330 ------GERGRT-GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 382

Query: 344 SRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRP-P 402
                           R  +GA     EP    SP P          A     P     P
Sbjct: 383 ----------------RGPEGAQGPRGEPGTPGSPGP----------AGASGNPGTDGIP 416

Query: 403 CARPSGAGPAREGPAAWPG--GAPTPPHAR----PTGRRQDP-------------EPGPR 443
            A+ S   P   G   +PG  G P P  A     P G+  +P             EPGP 
Sbjct: 417 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 476

Query: 444 APRGGPASSGWHAGSAAGRGWDPGG----GSRARRRAARGRG 481
            P+G P  +G   G    RG +PGG    G    R A   RG
Sbjct: 477 GPQGAPGPAG-EEGKRGARG-EPGGVGPIGPPGERGAPGNRG 516



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 83/319 (26%), Positives = 103/319 (32%), Gaps = 35/319 (10%)

Query: 191 GQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLAL-GLIAPRRGAGRAGAGAAAC------ 243
           G  GP   RG   E  R +P A     P G     G   P+  +G AG   A        
Sbjct: 693 GLVGPRGERGFPGE--RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 750

Query: 244 --GRRGR--IAAPLSG---VVQKASYLRP-KNLPRLLSMPSAAARPCGAALPRSGFSGR- 294
             G RG   IA P      V +K     P K+  R L+ P     P GA    +G  G  
Sbjct: 751 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA----NGEKGEV 806

Query: 295 -PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCA 353
            P G  G+A  RG+ GE    G     G A  P +     A+   G           G  
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 866

Query: 354 HQDGQRRTRDGAGNHASEPAR-VWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPA 412
              G    +   G    + AR    PP     P    R          PP +  +   P 
Sbjct: 867 GPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG--------PPGSNGNPGPPG 918

Query: 413 REGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSA-AGRGWDPGGGSR 471
             GP+   G       + P GR    EPG + P G P   G       +G    PG    
Sbjct: 919 PPGPSGKDGPKGARGDSGPPGRA--GEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976

Query: 472 ARRRAARGRGCLRSARSSP 490
           A +R   G    R  R  P
Sbjct: 977 AGQRGIVGLPGQRGERGFP 995



 Score = 36.2 bits (82), Expect = 0.097
 Identities = 84/334 (25%), Positives = 108/334 (32%), Gaps = 42/334 (12%)

Query: 167 PAWPALPAPAAGRAL-GTDEPLALRGQCGPAARRGCAQEQLRNAPWAPR-AHSPAGRLAL 224
           P  P  P     R L G       +G+ GP+   G   E  R  P  P+ A    G   +
Sbjct: 548 PGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG---EDGRPGPPGPQGARGQPG--VM 602

Query: 225 GLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
           G   P+   G  G      G +G   AP L G+  K         P     P+      G
Sbjct: 603 GFPGPKGANGEPGKA----GEKGLPGAPGLRGLPGKDGETGAAGPPGPAG-PAGERGEQG 657

Query: 284 AALPRSGFSGRPR-----GRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRA 338
           A  P SGF G P      G GG    +G  GE  A G+   RG    P    +  A+   
Sbjct: 658 APGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ 716

Query: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPK 398
           G           G    DG +     AG     P     PP  +  P     A +     
Sbjct: 717 GP------RGLPGTPGTDGPKGASGPAG-----PPGAQGPPGLQGMPGERGAAGIAGPKG 765

Query: 399 RRPPCAR--PSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEP----GPRAPRGGPASS 452
            R       P GA P ++G     G    P  A   G + +  P    G    RG P   
Sbjct: 766 DRGDVGEKGPEGA-PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 824

Query: 453 G-----WHAGSAAGRGWDPGGGSRARRRAARGRG 481
           G       AG A   G D   G++  +  A  +G
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 858



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 402 PCARPSGAGPARE-GPAAWPGGAPTPPHARPTGRRQDP-------EPGPRAPRGGPASSG 453
           P   P   GPA E GP    G         P GR  +P        PGP  P G P   G
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 177

Query: 454 WHAGSAAGRGWDPGGGSR 471
             A   AG   +  GG++
Sbjct: 178 NFAAQMAGGFDEKAGGAQ 195


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 129/504 (25%), Positives = 161/504 (31%), Gaps = 73/504 (14%)

Query: 134  LLGSHGGRRSCGREG-QGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQ 192
            + G  G R   G +G +G  G+      T    GP  P  PA A G       P    G 
Sbjct: 691  IAGPKGDRGDVGEKGPEGAPGKDGGRGLT----GPIGPPGPAGANGEKGEVGPP----GP 742

Query: 193  CGPAARRGCAQEQLRNAPWAPRAHS-PAGRLALGLIAPRRGAGRAG--AGAAACGRRGRI 249
             G A  RG   E+    P  P   + P G  A G    +   G AG    A A G +G  
Sbjct: 743  AGSAGARGAPGERGETGPPGPAGFAGPPG--ADGQPGAKGEQGEAGQKGDAGAPGPQGPS 800

Query: 250  AAP----LSGVVQKASYLRPKNLPRLLSMPSAAAR---PCGAALPRSGFSGRPRGRGGAA 302
             AP     +GV         +  P     P AA R   P     P       P G+ G  
Sbjct: 801  GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 860

Query: 303  AGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT---SRFEAQRGCAHQDGQR 359
              RG  G     G    +G A  P           +G            QRG     GQR
Sbjct: 861  GARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR 920

Query: 360  RTRD--GAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPA 417
              R   G    + EP +  +P     R                PP   P G  P   GPA
Sbjct: 921  GERGFPGLPGPSGEPGKQGAPGASGDRG---------------PP--GPVGP-PGLTGPA 962

Query: 418  AWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAA 477
              PG   +P    P GR  D   G +  RG   + G  A  A G    PG      ++  
Sbjct: 963  GEPGREGSPGADGPPGR--DGAAGVKGDRGETGAVG--APGAPGPPGSPGPAGPTGKQGD 1018

Query: 478  RGRGCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWW--FLSRN 535
            RG    +         P+G S           +GP  D  E     ERG +    F    
Sbjct: 1019 RGEAGAQG--------PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1070

Query: 536  GVDYTTGPRSEQ--RGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRS 593
            G+    GP  +Q   G A    PR    PG     +    +    G+P P  P       
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSGPRGP--PG----PVGPSGKDGANGIPGPIGPPG----- 1119

Query: 594  LWPSMRNFPTGHCRGISSPSPPGP 617
              P  R+  TG      +P PPGP
Sbjct: 1120 --PRGRSGETGPAGPPGNPGPPGP 1141



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 116/435 (26%), Positives = 142/435 (32%), Gaps = 77/435 (17%)

Query: 136  GSHGGRRSCGREGQ-GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG 194
            G  G R + G  G  G  G   R         P  P  P P+     G D P   RG  G
Sbjct: 813  GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS-----GKDGPKGARGDSG 867

Query: 195  PAARRGCAQEQLRNAP----WAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIA 250
            P  R G    Q    P      P    P+G  A G   P+  AG+ G      G+RG   
Sbjct: 868  PPGRAGEPGLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGI-VGLPGQRGERG 924

Query: 251  AP-LSGVVQKASYLRPKNLPRLLSMPSAAAR--------PCGAALP-----RSGFSGR-- 294
             P L G         P   P     P A+          P G   P     R G  G   
Sbjct: 925  FPGLPG---------PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADG 975

Query: 295  PRGRGGAAAGRGSRGEHPACGVGLARGT--APQPAS-TWALAARPRAGGTWTSRFEAQRG 351
            P GR GAA  +G RGE  A G   A G   +P PA  T     R  AG           G
Sbjct: 976  PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035

Query: 352  CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGP 411
                 G +  R   G  A EP         R          LQ  P    P      +GP
Sbjct: 1036 ARGIQGPQGPRGDKG-EAGEPG-------ERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1087

Query: 412  AREGPAAWPGGAPTP--------------PHARPTGRRQDPEPGPRAPRG--------GP 449
            A  GP+  P G P P              P   P  R +  E GP  P G        GP
Sbjct: 1088 A--GPSG-PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP 1144

Query: 450  ASSGWHAGSAAGRG-WDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAA 508
               G    + AG G  + G       RA +  G LR   +   A     +  +  +RS  
Sbjct: 1145 PGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPE 1204

Query: 509  G--RGPSLDSREVRV 521
            G  + P+   R++++
Sbjct: 1205 GSRKNPARTCRDLKL 1219



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 93/342 (27%), Positives = 111/342 (32%), Gaps = 82/342 (23%)

Query: 167 PAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGL 226
           P  P +  P   R  G   P    G  G A + G A E  R  P    A    G   L  
Sbjct: 161 PGEPGVSGPMGPR--GPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTPGLPG 216

Query: 227 IAPRRG-AGRAGAG--AAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
           +   RG  G  GA   A A G +G   +P  G       + P+ LP              
Sbjct: 217 VKGHRGYPGLDGAKGEAGAPGVKGESGSP--GENGSPGPMGPRGLP-------------- 260

Query: 284 AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT 343
                 G  GR  G  GAA  RG+ G+    G     G A  P    A  A+  AG T  
Sbjct: 261 ------GERGRT-GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 313

Query: 344 SRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRP-P 402
                           R  +GA     EP    SP P          A     P     P
Sbjct: 314 ----------------RGPEGAQGPRGEPGTPGSPGP----------AGASGNPGTDGIP 347

Query: 403 CARPSGAGPAREGPAAWPG--GAPTPPHAR----PTGRRQDP-------------EPGPR 443
            A+ S   P   G   +PG  G P P  A     P G+  +P             EPGP 
Sbjct: 348 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 407

Query: 444 APRGGPASSGWHAGSAAGRGWDPGG----GSRARRRAARGRG 481
            P+G P  +G   G    RG +PGG    G    R A   RG
Sbjct: 408 GPQGAPGPAG-EEGKRGARG-EPGGVGPIGPPGERGAPGNRG 447



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 83/319 (26%), Positives = 103/319 (32%), Gaps = 35/319 (10%)

Query: 191 GQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLAL-GLIAPRRGAGRAGAGAAAC------ 243
           G  GP   RG   E  R +P A     P G     G   P+  +G AG   A        
Sbjct: 624 GLVGPRGERGFPGE--RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 681

Query: 244 --GRRGR--IAAPLSG---VVQKASYLRP-KNLPRLLSMPSAAARPCGAALPRSGFSGR- 294
             G RG   IA P      V +K     P K+  R L+ P     P GA    +G  G  
Sbjct: 682 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA----NGEKGEV 737

Query: 295 -PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCA 353
            P G  G+A  RG+ GE    G     G A  P +     A+   G           G  
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 797

Query: 354 HQDGQRRTRDGAGNHASEPAR-VWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPA 412
              G    +   G    + AR    PP     P    R          PP +  +   P 
Sbjct: 798 GPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG--------PPGSNGNPGPPG 849

Query: 413 REGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSA-AGRGWDPGGGSR 471
             GP+   G       + P GR    EPG + P G P   G       +G    PG    
Sbjct: 850 PPGPSGKDGPKGARGDSGPPGRA--GEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907

Query: 472 ARRRAARGRGCLRSARSSP 490
           A +R   G    R  R  P
Sbjct: 908 AGQRGIVGLPGQRGERGFP 926



 Score = 36.2 bits (82), Expect = 0.097
 Identities = 84/334 (25%), Positives = 108/334 (32%), Gaps = 42/334 (12%)

Query: 167 PAWPALPAPAAGRAL-GTDEPLALRGQCGPAARRGCAQEQLRNAPWAPR-AHSPAGRLAL 224
           P  P  P     R L G       +G+ GP+   G   E  R  P  P+ A    G   +
Sbjct: 479 PGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG---EDGRPGPPGPQGARGQPG--VM 533

Query: 225 GLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
           G   P+   G  G      G +G   AP L G+  K         P     P+      G
Sbjct: 534 GFPGPKGANGEPGKA----GEKGLPGAPGLRGLPGKDGETGAAGPPGPAG-PAGERGEQG 588

Query: 284 AALPRSGFSGRPR-----GRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRA 338
           A  P SGF G P      G GG    +G  GE  A G+   RG    P    +  A+   
Sbjct: 589 APGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ 647

Query: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPK 398
           G           G    DG +     AG     P     PP  +  P     A +     
Sbjct: 648 GP------RGLPGTPGTDGPKGASGPAG-----PPGAQGPPGLQGMPGERGAAGIAGPKG 696

Query: 399 RRPPCAR--PSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEP----GPRAPRGGPASS 452
            R       P GA P ++G     G    P  A   G + +  P    G    RG P   
Sbjct: 697 DRGDVGEKGPEGA-PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 755

Query: 453 G-----WHAGSAAGRGWDPGGGSRARRRAARGRG 481
           G       AG A   G D   G++  +  A  +G
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 789



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 402 PCARPSGAGPARE-GPAAWPGGAPTPPHARPTGRRQDP-------EPGPRAPRGGPASSG 453
           P   P   GPA E GP    G         P GR  +P        PGP  P G P   G
Sbjct: 49  PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 108

Query: 454 WHAGSAAGRGWDPGGGSR 471
             A   AG   +  GG++
Sbjct: 109 NFAAQMAGGFDEKAGGAQ 126


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 57/177 (32%), Positives = 75/177 (42%), Gaps = 24/177 (13%)

Query: 344 SRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPC 403
           SR  ++    H+D  R+T    G+  S  +R  SP P           S    P+R    
Sbjct: 272 SRSPSRLSPKHRDEGRKT----GSQRSSGSR--SPSPSG--------GSGWGSPQRNGGS 317

Query: 404 ARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRG 463
            + SGA   R G A  P   P+ P  R   +     P P A RG  + S   A S+ GRG
Sbjct: 318 GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPA-RGKESPSPRSAPSSQGRG 376

Query: 464 WDPGGGSRARRRAARGRGCLRSARSSPHAR---------PLGSSRSVRLLRSAAGRG 511
               GG+  RRR  R R   RS+ S+P  R         P GSSRS+   RS++  G
Sbjct: 377 GRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSG 433



 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 72/282 (25%), Positives = 97/282 (34%), Gaps = 30/282 (10%)

Query: 214 RAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLS 273
           R+ SP+G    G  +P+R  G      A  GR G   +P       +  +R K      +
Sbjct: 298 RSPSPSGGSGWG--SPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDK---AAAA 352

Query: 274 MPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALA 333
            P+  AR   +  PRS  S +  GRGG A          A G G  R    +   + + A
Sbjct: 353 APTPPARGKESPSPRSAPSSQ--GRGGRA----------AGGAGRRRRRRRRRRRSRSSA 400

Query: 334 ARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASL 393
           + PR  G    R    RG +    + R+   +G+    P     P   R       RA  
Sbjct: 401 SAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRA-- 458

Query: 394 QEEPKRRPPCARPSGAGPA------REGPAAWPGGAPTPPHARPTGRRQDPEPG-PRAPR 446
               K RPP ARP+   P+      R GP          PH R     + P     R+  
Sbjct: 459 ----KERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAE 514

Query: 447 GGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARS 488
             P S             D  G  RAR   A      R +RS
Sbjct: 515 KRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRS 556



 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 58/202 (28%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 319 ARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQR------RTRDGAGNHA-SE 371
           +R  +P   S W    R    G  +     + G AH    +      R RD A   A + 
Sbjct: 297 SRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTP 356

Query: 372 PARVWSPPPRRQRPRRLPR-------ASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAP 424
           PAR    P  R  P    R       A  +   +RR   +R S + P R G    P  AP
Sbjct: 357 PARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR-PRPAP 415

Query: 425 TPPHARPTGRRQ---DPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRG 481
               +R   R +   D   G  AP  GP       GS  G G   G G RA+ R  R R 
Sbjct: 416 PRGSSRSLSRARSSSDSGSGRGAPGPGP-----EPGSERGHG---GHGKRAKERPPRARP 467

Query: 482 CLRSARSSPHAR---PLGSSRS 500
              S     H R   P G S S
Sbjct: 468 ASTSPSPGAHGRRGGPEGKSSS 489


>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 61/192 (31%), Positives = 76/192 (39%), Gaps = 24/192 (12%)

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGC-----AHQDGQRRTRDGAG 366
           P  G   A G A  PA      ARP  G  W +R  A         +H  G   + D   
Sbjct: 60  PRPGTLRAPGNAESPAPR---RARPDLGRPWATRSAASPHSKMWLGSHLRGGEMSGDPHT 116

Query: 367 NHASEPARVWSPPPRRQRPRRLPRASLQEEPK--RRPPCARPSGAGPAREGPAAWPGGAP 424
           +  + PA+  +P         LP    Q +P    RP   RP+   PA EGP    GG P
Sbjct: 117 DLPAHPAQTTNPE------LELPADPAQPDPAPLSRPAPPRPAHQSPAEEGPRGAAGGGP 170

Query: 425 TPPHARPTGRRQDPEPGPR-APRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGC- 482
             P   P GR Q  + GPR +PR  P S+     S  G   D  G +R+   A   R   
Sbjct: 171 RTP---PAGRTQG-QSGPRESPRASPGSAAPAMASVRGPARD--GATRSEPHATEIRTLE 224

Query: 483 LRSARSSPHARP 494
            +SARS   A P
Sbjct: 225 PQSARSCCLAAP 236



 Score = 33.9 bits (76), Expect = 0.48
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 583 PTPPDSRQLRSLWPSMRNFPTGHCRGISSPSPPGP----ASGSPRQFLHVSPGILRAASL 638
           P PP    L S W ++       CR + +P+ PGP    A   P   L   PG LRA   
Sbjct: 15  PCPP----LFSAWEALSKVEGSECRALPTPTAPGPSPRRAPEPPLLTLRPRPGTLRAPGN 70

Query: 639 LRAPS 643
             +P+
Sbjct: 71  AESPA 75


>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
           sapiens]
          Length = 594

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 105/378 (27%), Positives = 122/378 (32%), Gaps = 84/378 (22%)

Query: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG---PAAR 198
           R  GR   G G +R  A   L  L         P+A  A G   PL L GQ     PA  
Sbjct: 262 RHGGRAAAGLGSQRGAALAGLIYL---------PSAAAAAGRHCPLRLAGQAPRTQPACP 312

Query: 199 RGCAQEQLRNAPW---------------APRAHSPAGRLALGL-IAPRRGAGRAGAGAAA 242
                +Q    PW               +PR + P   LA GL ++P+ GA R G    A
Sbjct: 313 AAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQS-LAEGLGVSPQAGA-RVGEAREA 370

Query: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
                R      G  +                  A      A + R G+        GA 
Sbjct: 371 VTTHERAHLDREGEAR------------------ARLGQAAAQMRREGW--------GAR 404

Query: 303 AGRGSRGEHPACGVGL----ARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQD 356
           A  G RG    CG G     AR   P  A+   LA + RAG     T      RG     
Sbjct: 405 AKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGP 463

Query: 357 GQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCA--RPSGA 409
           G  R   G       P R W       RP R     LP      + +R P  A  R    
Sbjct: 464 GAGRVPSGGRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG 522

Query: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHA-----GSAAGRGW 464
           G   +GP A       PP A P  R +     P  P G P      A      SA     
Sbjct: 523 GRVGKGPGA-------PPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575

Query: 465 DPGGGS-RARRRAARGRG 481
           DPGGGS R R R  R  G
Sbjct: 576 DPGGGSARIRSRPGRSGG 593


>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
           sapiens]
          Length = 594

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 105/378 (27%), Positives = 122/378 (32%), Gaps = 84/378 (22%)

Query: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG---PAAR 198
           R  GR   G G +R  A   L  L         P+A  A G   PL L GQ     PA  
Sbjct: 262 RHGGRAAAGLGSQRGAALAGLIYL---------PSAAAAAGRHCPLRLAGQAPRTQPACP 312

Query: 199 RGCAQEQLRNAPW---------------APRAHSPAGRLALGL-IAPRRGAGRAGAGAAA 242
                +Q    PW               +PR + P   LA GL ++P+ GA R G    A
Sbjct: 313 AAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQS-LAEGLGVSPQAGA-RVGEAREA 370

Query: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
                R      G  +                  A      A + R G+        GA 
Sbjct: 371 VTTHERAHLDREGEAR------------------ARLGQAAAQMRREGW--------GAR 404

Query: 303 AGRGSRGEHPACGVGL----ARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQD 356
           A  G RG    CG G     AR   P  A+   LA + RAG     T      RG     
Sbjct: 405 AKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGP 463

Query: 357 GQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCA--RPSGA 409
           G  R   G       P R W       RP R     LP      + +R P  A  R    
Sbjct: 464 GAGRVPSGGRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG 522

Query: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHA-----GSAAGRGW 464
           G   +GP A       PP A P  R +     P  P G P      A      SA     
Sbjct: 523 GRVGKGPGA-------PPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575

Query: 465 DPGGGS-RARRRAARGRG 481
           DPGGGS R R R  R  G
Sbjct: 576 DPGGGSARIRSRPGRSGG 593


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 95/358 (26%), Positives = 119/358 (33%), Gaps = 61/358 (17%)

Query: 166 GPAWPALP----APAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNA-PWAPRAHSPAG 220
           G   P  P    +P      G + P   +G  GP   RG A    R+  P  P    P G
Sbjct: 89  GECCPVCPDGSESPTDQETTGVEGP---KGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPG 145

Query: 221 RLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLS-GVVQKASYLRPKNLPRLLSMPSAAA 279
                   P    G  G G       G  A  LS G  +K++       P   S P    
Sbjct: 146 --------PPGPPGPPGLG-------GNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP 190

Query: 280 RPCGAALPRSGFSGRPR--GRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALA---- 333
            P GA  P+ GF G P   G  GA+   G RG     G     G A +P           
Sbjct: 191 GPPGAPGPQ-GFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249

Query: 334 --ARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRA 391
             AR   G       +  RG +  DG +     AG      +   +  P +  PR LP  
Sbjct: 250 QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE 309

Query: 392 SLQEEPKRRPPCARPSGA----------------GPAREGPAAWPGGAPTPPHARPTGRR 435
                 + RP    P+GA                GPA  GP  +PG       A P G R
Sbjct: 310 ------RGRPGAPGPAGARGNDGATGAAGPPGPTGPA--GPPGFPGAVGAKGEAGPQGPR 361

Query: 436 QDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHAR 493
                GP+  RG P   G     AAG   +PG   +   + A G   +  A   P AR
Sbjct: 362 --GSEGPQGVRGEPGPPG--PAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGAR 415



 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 126/488 (25%), Positives = 154/488 (31%), Gaps = 77/488 (15%)

Query: 175  PAAGRALGTDEPLALRGQCGPAARRGC-AQEQLRNAPWAPRAHSPAGRLA-LGLIAPRRG 232
            P    A G   P   RG  GP    G   ++ +R          PAG     G   P   
Sbjct: 730  PGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGP 789

Query: 233  AGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFS 292
            AG  GA  A  G RG    P       A +  P   P     P A   P  A     G +
Sbjct: 790  AGPTGARGAP-GDRGEPGPP-----GPAGFAGP---PGADGQPGAKGEPGDAGA--KGDA 838

Query: 293  GRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRF---EAQ 349
            G P G  G A   G  G   A G   ARG+A  P +T    A  R G    S        
Sbjct: 839  GPP-GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP 897

Query: 350  RGCAHQDGQRRTRDGAGNHASEPARVWSP-PPRRQRPRRLPRASLQEEPKRRPPCARPSG 408
             G A ++G +  R G    A  P  V  P PP     +  P A   + P   P    P G
Sbjct: 898  PGPAGKEGGKGPR-GETGPAGRPGEVGPPGPPGPAGEKGSPGA---DGPAGAPGTPGPQG 953

Query: 409  AG--------PAREGPAAWPG--------GAPTPPHARPTGRRQDPEP-GPRAPRGGPAS 451
                      P + G   +PG        G   P  A  +G R  P P GP    G P  
Sbjct: 954  IAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA--SGERGPPGPMGPPGLAGPPGE 1011

Query: 452  SGWHAGSAA----GRGWDPGGGSRARRRAARGRGCLRSARSSP----------------H 491
            SG      A    GR   PG           G      A  +P                 
Sbjct: 1012 SGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071

Query: 492  ARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRNGVDYTTGPRSE--QRG 549
            A P G    V     A  +GP  D  E     +RG +      +G+    GP     ++G
Sbjct: 1072 AGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK-GHRGFSGLQGPPGPPGSPGEQG 1130

Query: 550  LARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRNFPTGHCRGI 609
             + A  P     P  +  A   P +    GLP P  P   + R          TG    +
Sbjct: 1131 PSGASGPAGPRGPPGSAGA---PGKDGLNGLPGPIGPPGPRGR----------TGDAGPV 1177

Query: 610  SSPSPPGP 617
              P PPGP
Sbjct: 1178 GPPGPPGP 1185



 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 81/331 (24%), Positives = 99/331 (29%), Gaps = 47/331 (14%)

Query: 163 FQLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRL 222
           FQ  P  P  P        G   P+  RG  GP  + G   E     P  P    P G  
Sbjct: 201 FQGPPGEPGEP--------GASGPMGPRGPPGPPGKNGDDGEA--GKPGRPGERGPPG-- 248

Query: 223 ALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPC 282
                 P+   G  G       +  R  + L G    A    PK  P       A  +  
Sbjct: 249 ------PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 302

Query: 283 GAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTW 342
              LP  G  GRP G  G A  RG+ G   A G     G A  P    A+ A+  AG   
Sbjct: 303 PRGLP--GERGRP-GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359

Query: 343 TSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPP 402
               E  +G   + G      GA   A  P     P  +          +      R P 
Sbjct: 360 PRGSEGPQGVRGEPGPPGPA-GAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPS 418

Query: 403 CARPSGAGPAREGPAAWPG-----------------GAPTPP----HARPTGRRQDPEP- 440
             +  G  P  +G +  PG                 G   PP         G R +P P 
Sbjct: 419 GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT 478

Query: 441 ---GPRAPRGGPASSGWHAGSAAGRGWDPGG 468
              GP   RGGP S G+           P G
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGPAG 509



 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 82/323 (25%), Positives = 99/323 (30%), Gaps = 42/323 (13%)

Query: 180 ALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAG 239
           A G   P+ ++G  GPA   G  +   R  P       P G              R G G
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEG--KRGARGEPGPTGLPGPPGE-------------RGGPG 491

Query: 240 AAACGRRGRIAAPLSGVVQKASY--LRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRG 297
           +        +A P     ++ S     PK  P     P  A  P    L  S  S  P G
Sbjct: 492 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 551

Query: 298 RGGAAAGRGSRGEHPACGVGLARGTAPQ---PASTWALAARPRAGGTWTSRFEAQRGCAH 354
           + G     G  G     G   ARG A     P    A     +AG           G A 
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 611

Query: 355 QDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRAS--LQEEPKRRPPCARPSGAGPA 412
           +DG+   +   G     PA      P  +R  + P  S   Q  P    P   P  AG  
Sbjct: 612 KDGEAGAQGPPG-----PA-----GPAGERGEQGPAGSPGFQGLP---GPAGPPGEAGKP 658

Query: 413 REGPAAWPGGAPTPPHAR-----PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPG 467
            E       GAP P  AR     P  R     PGP  PRG   + G     A G    PG
Sbjct: 659 GEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPG--NDGAKGDAGAPG 716

Query: 468 GGSRARRRAARGRGCLRSARSSP 490
                     +G    R A   P
Sbjct: 717 APGSQGAPGLQGMPGERGAAGLP 739



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 93/351 (26%), Positives = 114/351 (32%), Gaps = 71/351 (20%)

Query: 175 PAAGRALGTDEPLALRGQCGPAARRGCAQEQ----------LRNAPWAPRAHSPAGRLAL 224
           P A    G   P   RG  GPA  +G   E            +    +P +  P G+   
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGK--T 553

Query: 225 GLIAPRRGAGRAG--AGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARP 281
           G   P    GR G      A G+ G +  P   G   +      + +P     P  A  P
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG----PPGAVGP 609

Query: 282 CGAALPRSGFSGR--PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA-------- 331
            G    + G +G   P G  G A  RG +G   + G     G A  P             
Sbjct: 610 AG----KDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG 665

Query: 332 -LAARPRAGGTWTSRFEAQRGCAHQDGQRRTR--------DGAGNHASEPARVWS--PPP 380
            L A   +G      F  +RG     G    R        DGA   A  P    S   P 
Sbjct: 666 DLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPG 725

Query: 381 RRQRPRRLPRASLQEEPKRRPPCARPSGA--GPARE------------GPAAWPG----G 422
            +  P     A L   PK     A P GA   P ++            GPA  PG     
Sbjct: 726 LQGMPGERGAAGL-PGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGES 784

Query: 423 APTPPHARPTGRRQDP----EPGPRAPRG--GPASSGWHAGSAAGRGWDPG 467
            P+ P A PTG R  P    EPGP  P G  GP  +    G A G   D G
Sbjct: 785 GPSGP-AGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG-AKGEPGDAG 833



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 89/320 (27%), Positives = 103/320 (32%), Gaps = 44/320 (13%)

Query: 136  GSHGGRRSCGREGQGRGGRRRRA-ADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG 194
            G  G     G+EG G+G R     A    ++GP  P  PA   G   G D P    G  G
Sbjct: 893  GPPGPPGPAGKEG-GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP-GADGPAGAPGTPG 950

Query: 195  P---AARRGCA----QEQLRNAPWAPRAHSPAGRLAL----------------GLIAPRR 231
            P   A +RG      Q   R  P  P      G+                   GL  P  
Sbjct: 951  PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 1010

Query: 232  GAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGF 291
             +GR GA  A  G  GR  +P  G         P   P     P A   P G A    G 
Sbjct: 1011 ESGREGAPGAE-GSPGRDGSP--GAKGDRGETGPAGPPGAPGAPGAPG-PVGPA----GK 1062

Query: 292  SGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRG 351
            SG  RG  G A   G  G   A G    +G       T     R   G    S  +   G
Sbjct: 1063 SG-DRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPG 1121

Query: 352  CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGP 411
                 G++       + AS PA    PP     P +     L        P  R   AGP
Sbjct: 1122 PPGSPGEQ-----GPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGP 1176

Query: 412  AREGPAAWPG--GAPTPPHA 429
               GP   PG  G P PP A
Sbjct: 1177 V--GPPGPPGPPGPPGPPSA 1194


>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
           sapiens]
          Length = 245

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 72/220 (32%), Positives = 87/220 (39%), Gaps = 36/220 (16%)

Query: 280 RPCGAALPRSGFSGRPRGR--GGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPR 337
           +P   A+  S FS R  GR   G+A+  G+R +          G   Q AS     AR  
Sbjct: 10  KPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRTPGPDGQDASP---RAREE 66

Query: 338 AGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWS------PPPRRQRPRRLPRA 391
            GG      E + G +H       R+  G H     R  +      PP  R RPR  PR 
Sbjct: 67  DGGR-----ERRGGLSHSKDCNAARNARGKHLRRTRRRRTLGRRCRPPAPRPRPR--PRR 119

Query: 392 SLQ-EEPKRRPPCARPSGAGPAREGPAAW---PGGAPTPPHARPTGRRQDPEPGP----R 443
            L  ++   R P ARP   GP   G + W   PG    P   RPT   Q P PGP    R
Sbjct: 120 KLALDQAATRIPAARPRPPGPGGRG-SHWKIQPGVQRLP---RPTPSAQ-PRPGPPERRR 174

Query: 444 APRG----GPASSGWHAGSAAGRGWDPGGG-SRARRRAAR 478
           A R     G    G    +A  R   PGGG  R+RR  AR
Sbjct: 175 ASRPLIGCGRGGGGTWRRAADSRWRRPGGGFQRSRREKAR 214


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 98/373 (26%), Positives = 121/373 (32%), Gaps = 64/373 (17%)

Query: 136 GSHGGRRSCGREG----QGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRG 191
           GS GG  S G+ G    QG  GR           GP  P+ P    G  +G   P    G
Sbjct: 540 GSPGGPGSDGKPGPPGSQGESGRP----------GPPGPSGPRGQPG-VMGFPGPKGNDG 588

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
             G    RG         P  P    P G+   G   P+   G  G G    G +G    
Sbjct: 589 APGKNGERG--------GPGGPGPQGPPGKN--GETGPQGPPGPTGPG----GDKGDTGP 634

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPR--SGFSGRPRGRGGAAAGRGSRG 309
           P    +Q         LP     P    +P G   P+  +G  G P G+G A A  G RG
Sbjct: 635 PGPQGLQ--------GLPGTGGPPGENGKP-GEPGPKGDAGAPGAPGGKGDAGAP-GERG 684

Query: 310 EHPACGVGLARGTAPQPASTWALAAR-----PRAGGT-WTSRFEAQRGCAHQDGQRRTRD 363
                G    RG A  P       A      P A GT        +RG     G +  + 
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKG 744

Query: 364 GAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAG--PAREGPAAWPG 421
             G   ++        P +  PR          P  +P      GA   P   GP   PG
Sbjct: 745 EPGGPGADGV------PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPG 798

Query: 422 G----APTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAA 477
                 P  P   P    Q+ EPG +  RG P   G   G   G    PGG   A     
Sbjct: 799 ERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKG--EGGPPGVAGPPGGSGPAGPPGP 856

Query: 478 RGRGCLRSARSSP 490
           +G   ++  R SP
Sbjct: 857 QG---VKGERGSP 866



 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 87/327 (26%), Positives = 110/327 (33%), Gaps = 37/327 (11%)

Query: 166  GPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRL-AL 224
            GP  PA    A G   G   P    GQ G     G      +  P AP     AG   A 
Sbjct: 903  GPPGPAGNTGAPGSP-GVSGPKGDAGQPGEKGSPGA-----QGPPGAPGPLGIAGITGAR 956

Query: 225  GLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
            GL  P    G  G+     G +G    P  +G+  +     P+ LP L        R   
Sbjct: 957  GLAGPPGMPGPRGSPGPQ-GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD-- 1013

Query: 284  AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPR------ 337
                  G  G P GR G+  G+G RGE+ + G   A G  P P      A +        
Sbjct: 1014 ---GNPGSDGLP-GRDGSPGGKGDRGENGSPGAPGAPGH-PGPPGPVGPAGKSGDRGESG 1068

Query: 338  -AGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEE 396
             AG          RG     G R  +   G   +   +     P        P  + Q+ 
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128

Query: 397  PKRRPPCARPSG-----AGPAREGPAAWPG--GAPTPPHAR-PTGRRQDP----EPGPRA 444
                P  A P G       P ++G +  PG  G P P   R   G    P    +PGP  
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188

Query: 445  PRG--GPASSGWHAGSAAGRGWDPGGG 469
            P G  GP   G  A + AG G +  GG
Sbjct: 1189 PPGAPGPCCGGVGAAAIAGIGGEKAGG 1215



 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 85/308 (27%), Positives = 99/308 (32%), Gaps = 48/308 (15%)

Query: 190 RGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRL-ALGLIAPRRGAGRAGAGAAAC----- 243
           +G+ GPA   G        AP    A  P G   A G    R GAG  G   A       
Sbjct: 395 KGEMGPAGIPG--------APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR 446

Query: 244 GRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
           G RG    P + G   +         P    +P AA    GA     GF G P G  G  
Sbjct: 447 GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGER-GAP----GFRG-PAGPNGIP 500

Query: 303 AGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTR 362
             +G  GE  A G    RG A +P            GG          G    DG    +
Sbjct: 501 GEKGPAGERGAPGPAGPRGAAGEPGRDGV------PGGPGMRGMPGSPGGPGSDG----K 550

Query: 363 DGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSG--AGPAREGPAAWP 420
            G      E  R    PP    PR  P       PK        +G   GP   GP   P
Sbjct: 551 PGPPGSQGESGR--PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPP 608

Query: 421 G-----GAPTPPHARPTGRRQDP----EPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSR 471
           G     G   PP   PTG   D      PGP+  +G P + G       G+  +PG    
Sbjct: 609 GKNGETGPQGPP--GPTGPGGDKGDTGPPGPQGLQGLPGTGG--PPGENGKPGEPGPKGD 664

Query: 472 ARRRAARG 479
           A    A G
Sbjct: 665 AGAPGAPG 672



 Score = 40.8 bits (94), Expect = 0.004
 Identities = 86/354 (24%), Positives = 107/354 (30%), Gaps = 47/354 (13%)

Query: 170 PALPAPAAGRAL-GTDEPLALRGQCGPAARRGCAQEQLRN-APWAPRAH----SPAGRLA 223
           P    PA    + G   P   RG  GPA  RG A E  R+  P  P       SP G  +
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547

Query: 224 LGLIAPRRGAGRAG-----AGAAACGRRGRIAAP----LSGVVQKASYLRPKNLPRLLSM 274
            G   P    G +G       +   G+ G +  P      G   K         P     
Sbjct: 548 DGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGP 607

Query: 275 PSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAA 334
           P           P     G  +G  G    +G +G     G     G   +P       A
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667

Query: 335 RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQ 394
               GG   +    +RG     G    R GAG    E  +  + PP    P       LQ
Sbjct: 668 PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP--GPPGAAGTPGLQ 725

Query: 395 EEPKRRPPCARPSGAG-------------PAREGPAAWPGGAPTPPHARPTGRRQDPE-- 439
             P  R     P   G             P ++GP   P G   PP   P G+  D    
Sbjct: 726 GMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRG-PTGPIGPP--GPAGQPGDKGEG 782

Query: 440 -----PGPRAPRGGPASSG-----WHAG--SAAGRGWDPGGGSRARRRAARGRG 481
                PG   PRG P   G       AG   A G+  +PGG         +G G
Sbjct: 783 GAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEG 836



 Score = 39.3 bits (90), Expect = 0.011
 Identities = 93/373 (24%), Positives = 117/373 (31%), Gaps = 52/373 (13%)

Query: 145  GREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQ- 203
            G+ G+  G   R A     + GP   A P   +G A G   P  ++G+ G     G A  
Sbjct: 816  GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPA-GPPGPQGVKGERGSPGGPGAAGF 874

Query: 204  EQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASY 262
               R  P  P ++   G        P    G+ G    A G  G   +P +SG    A  
Sbjct: 875  PGARGLPGPPGSNGNPGPPG-----PSGSPGKDGPPGPA-GNTGAPGSPGVSGPKGDAGQ 928

Query: 263  LRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGT 322
               K  P     P A   P G A    G +G  RG  G     G RG     GV   +G 
Sbjct: 929  PGEKGSPGAQGPPGAPG-PLGIA----GITGA-RGLAGPPGMPGPRGSPGPQGV---KGE 979

Query: 323  APQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRR 382
            + +P +      R   G           G A + G    RDG       P R  SP  + 
Sbjct: 980  SGKPGANGLSGERGPPG---PQGLPGLAGTAGEPG----RDGNPGSDGLPGRDGSPGGKG 1032

Query: 383  QRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQD-PEPG 441
             R                          P   G    PG    P    P G+  D  E G
Sbjct: 1033 DRGEN---------------------GSPGAPGAPGHPG---PPGPVGPAGKSGDRGESG 1068

Query: 442  PRAPRG--GPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSR 499
            P  P G  GPA S    G    RG     G R        RG   +  +     P G   
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128

Query: 500  SVRLLRSAAGRGP 512
            ++     A  RGP
Sbjct: 1129 AIGSPGPAGPRGP 1141



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 50/202 (24%), Positives = 64/202 (31%), Gaps = 29/202 (14%)

Query: 275 PSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAA 334
           PS    P GA  P       P G+ G +   G  GE    G    +G A  P        
Sbjct: 211 PSGPPGPPGAIGPSG-----PAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGH 265

Query: 335 RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAG----NHASEPARVWSPPPRRQRPRRLPR 390
           R          F+ + G   + G    +   G    N A  P      P  R RP     
Sbjct: 266 RG---------FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGA 316

Query: 391 ASLQEEPKRRPPCARPSGAGPAREGPAAWPGG---------APTPPHARPTGRRQDPEPG 441
           A  +     R    +P   GP   G A +PG          A +P      G+R +P P 
Sbjct: 317 AGARGNDGARGSDGQPGPPGPP--GTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQ 374

Query: 442 PRAPRGGPASSGWHAGSAAGRG 463
             A   GP       GS  G+G
Sbjct: 375 GHAGAQGPPGPPGINGSPGGKG 396



 Score = 30.4 bits (67), Expect = 5.3
 Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 13/89 (14%)

Query: 406 PSGAGPAREGPAAWPGGAPTPPHA----RPTGR-RQDPEPGPRAPRG--------GPASS 452
           P   GP  E   A P G P PP A     P G+  +   PG    RG        GPA  
Sbjct: 197 PGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGI 256

Query: 453 GWHAGSAAGRGWDPGGGSRARRRAARGRG 481
               G    RG+D   G +    A   +G
Sbjct: 257 PGFPGMKGHRGFDGRNGEKGETGAPGLKG 285


>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
          Length = 629

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 111/422 (26%), Positives = 148/422 (35%), Gaps = 62/422 (14%)

Query: 140 GRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-----LGTDEPLALRGQCG 194
           G  S GR G     R   A++    LG A P+ P     RA          P A  G  G
Sbjct: 142 GSSSYGRLGPSEP-RGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTA-GGSAG 199

Query: 195 PAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLS 254
           P A    A+ + R  P+     +P+   A+ + +PR   GR    +   G  GR   PL 
Sbjct: 200 PEACSS-AERRARAGPFL----TPSPLHAVAMRSPRP-CGRPPTDSPDAGGAGR---PLD 250

Query: 255 GVVQKASYLRPKNLPRLLSMPSAAARPCGA-ALPRSGFSGRPRGRGGAAAGRGSR----- 308
           G +   S L  +   R    P  +  P GA   PR   S R R    + +   +R     
Sbjct: 251 GYI---SALLRRRRRRGAGQPRTS--PGGADGGPRRQNSVRQRPPDASPSPGSARPAREP 305

Query: 309 -----GEHPACGVGLARG--------TAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQ 355
                G HP     L+R          AP+PA+  A  + P +        +AQ     Q
Sbjct: 306 SLERVGGHPTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRL-VKAQYIPGAQ 364

Query: 356 DGQRRTRDGAGNHASEP---ARVWSPPPRRQRPRRLPRASLQEEP--KRRPPCARPSGAG 410
              R     A      P    R     P R+RPR   R     E   +R  P AR +   
Sbjct: 365 AATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRS 424

Query: 411 PAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGW------ 464
            +           P+ P   PT  R++P P PR PR GPA +     + + R W      
Sbjct: 425 QSETSLLGRASAVPSGPPKYPTAEREEPRP-PR-PRRGPAPTLAAQAAGSCRRWRSTAEI 482

Query: 465 DPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIE 524
           D   G R R RA   R         P   P  S+   RLL   AG      +  +  L  
Sbjct: 483 DAADGRRVRPRAPAAR--------VPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGR 534

Query: 525 RG 526
           RG
Sbjct: 535 RG 536


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 139/567 (24%), Positives = 179/567 (31%), Gaps = 110/567 (19%)

Query: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGC 201
           RS  R  +GR  R R        L P   A  AP   +      P   RG+ G       
Sbjct: 138 RSALRSQRGRAPRGRGRKHKTTPLPPPRLADVAPTPPKT-----PARKRGEEGTERMVQA 192

Query: 202 AQEQLRNA--PWAPRAHSPAGRLALGLIAPRRGAGRA-GAGAAACGRRGRIAAPLSGVVQ 258
             E LR A  P APR+       A     PRR  GR  G  A  C R+ +       VV 
Sbjct: 193 LTELLRRAQAPQAPRSR------ACEPSTPRRSRGRPPGRPAGPCRRKQQAV-----VVA 241

Query: 259 KASYLRPKNLPRLLSMP---SAAARPC------GAALPRSGFSGRPRGRGGAAAGRG--- 306
           +A+   PK  P    +P      +  C      G   PR G      GRGG   GRG   
Sbjct: 242 EAAVTIPKPEPPPPVVPVKHQTGSWKCKEGPGPGPGTPRRGGQSSRGGRGGRGRGRGGGL 301

Query: 307 -------SRGEHPACG---VGLARGTAP-QPASTWALAARPRAGG------TWTSRFEAQ 349
                  SR +    G   +GL  G    Q   +W    + R G        W  + +  
Sbjct: 302 PFVIKFVSRAKKVKMGQLSLGLESGQGQGQHEESWQDVPQRRVGSGQGGSPCWKKQEQKL 361

Query: 350 RGCAHQDGQRRTRDGAGNHASE--PARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPS 407
                +  +   +D  G    E   A    P   ++  +  P       P   PP   PS
Sbjct: 362 DDEEEEKKEEEEKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPS 421

Query: 408 GAGPAREGPAAWPGGAPTP---PHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGW 464
            + P    P   P  +P P   P   P    Q+  P P  P          A  +  RG 
Sbjct: 422 TSPPPPLCPPPPPPVSPPPLPSPPPPPAQEEQEESPPPVVP----------ATCSRKRGR 471

Query: 465 DP-GGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVR--- 520
            P     RA R AAR             A P G+S       +A G GP  DS  V    
Sbjct: 472 PPLTPSQRAEREAAR-------------AGPEGTSPPTPTPSTATG-GPPEDSPTVAPKS 517

Query: 521 -------------VLIERGCQWWFLSRNGVDY--TTGPRSEQRGLARAPLPREDLLPGHT 565
                        V+  R  +     R  +D      P+ E   + R P+     +P   
Sbjct: 518 TTFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPPKPPKVEVSPVLRPPITTSPPVPQEP 577

Query: 566 CRALDVPHRWRKKGLPDPTPPDSRQL----RSLWPSM-RNFPTGHCRGISSPSPPGPASG 620
                 P        P P P   R +       W S+ R  P         P+PP P + 
Sbjct: 578 APVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPP------PPPAPPPPPAP 631

Query: 621 SPRQFLHVSPGILRAASLLRAPSRSSS 647
           SP      S    R   LLRAP  + S
Sbjct: 632 SPPPAPATSS---RRPLLLRAPQFTPS 655



 Score = 39.7 bits (91), Expect = 0.009
 Identities = 124/499 (24%), Positives = 162/499 (32%), Gaps = 133/499 (26%)

Query: 191 GQC-GPAARRGCAQEQLRNAPWAPR-AHSPAGRLALG------LIAPRRGAGRAGAGAAA 242
           G C GP + RG         P  PR A    GR   G       +A RRG G  G G A 
Sbjct: 8   GSCPGPGSARG-------RFPGRPRGAGGGGGRGGRGNGAERVRVALRRGGGATGPGGAE 60

Query: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
            G             +  + LR   L R            G    R  ++G PR + G  
Sbjct: 61  PG-------------EDTALLRLLGLRR------------GLRRLRRLWAG-PRVQRGRG 94

Query: 303 AGRGSRGEHPACGVGLARGTAPQPASTWALAARPR----------AGGTWTSRFEAQRGC 352
            GRG        G G +RG  P+  S+   +              A  +  S   +QRG 
Sbjct: 95  RGRGR-------GWGPSRGCVPEEESSDGESDEEEFQGFHSDEDVAPSSLRSALRSQRGR 147

Query: 353 AHQDGQR----------RTRDGAGNHASEPAR------------VWSPPPRRQRPRRLPR 390
           A +   R          R  D A      PAR              +   RR +  + PR
Sbjct: 148 APRGRGRKHKTTPLPPPRLADVAPTPPKTPARKRGEEGTERMVQALTELLRRAQAPQAPR 207

Query: 391 ASLQEEPKRRPPCARPSG--AGPAR---------EGPAAWPGGAPTPPHA---RPTGR-- 434
           +   E    R    RP G  AGP R         E     P   P PP       TG   
Sbjct: 208 SRACEPSTPRRSRGRPPGRPAGPCRRKQQAVVVAEAAVTIPKPEPPPPVVPVKHQTGSWK 267

Query: 435 -RQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGG--------SRARRRAARGRGCLRS 485
            ++ P PGP  PR G  SS    G   GRG   GGG        SRA ++   G+  L  
Sbjct: 268 CKEGPGPGPGTPRRGGQSS---RGGRGGRGRGRGGGLPFVIKFVSRA-KKVKMGQLSLGL 323

Query: 486 ARSSPHARPLGSSRSVRLLRSAAGRG--PSLDSREVRVLIERGCQWWFLSRNGVDYTTGP 543
                  +   S + V   R  +G+G  P    +E ++  E   +             G 
Sbjct: 324 ESGQGQGQHEESWQDVPQRRVGSGQGGSPCWKKQEQKLDDEEEEK----KEEEEKDKEGE 379

Query: 544 RSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRNFPT 603
             E+R +A      E+++P        +P        P P PP       L P   + P 
Sbjct: 380 EKEERAVA------EEMMPAAEKEEAKLPPPPLTPPAPSPPPP-------LPPPSTSPPP 426

Query: 604 GHCRGISSPSPPGPASGSP 622
             C     P PP P S  P
Sbjct: 427 PLC-----PPPPPPVSPPP 440


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 110/412 (26%), Positives = 141/412 (34%), Gaps = 142/412 (34%)

Query: 141 RRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRAL----GTDEPLALRGQCGPA 196
           R +  R G+ RGGRR++               P PAAG A     G  +P   R + G  
Sbjct: 208 REAKSRFGKTRGGRRKKHRR------------PKPAAGGAKSRRGGGKKPQKQRRR-GQK 254

Query: 197 ARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGV 256
           A  G      ++     +     G+ A    A RRGA  AG   AA GR GR        
Sbjct: 255 AATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGR-------- 306

Query: 257 VQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGR-PRGRG-----GAAAG--RGSR 308
                   PK+L              G   PR G  G+ PR RG      AAAG  RG  
Sbjct: 307 -------GPKSL--------------GGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGG 345

Query: 309 GEHPACGVGLA-------RGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRT 361
           G+  A  VG+        RG  P+     A  A+ R GG      EA+R     DG+++ 
Sbjct: 346 GQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKR---RGDGRKK- 401

Query: 362 RDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPG 421
                             PR Q PRR                        A++ PAA   
Sbjct: 402 ------------------PRWQNPRRR-----------------------AQKAPAA--- 417

Query: 422 GAPTPPHARPTGRRQDPEPGPRAPRGG----PASSGWHAGSAAGRGWDPGGGSRARRRAA 477
                                  PRGG    P   G  A  + G     GGG + RRR  
Sbjct: 418 ----------------------KPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQ 455

Query: 478 RGRGCLRSARSSPHARPLGSSRSVRLLRSAAG---RGPSLDSREVRVLIERG 526
           + R   ++A +   +R  G  +  R   SAAG   RG  L S   + L  RG
Sbjct: 456 KAR--QKAAEAGAESR--GDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRG 503



 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 87/323 (26%), Positives = 123/323 (38%), Gaps = 65/323 (20%)

Query: 190 RGQCGPAA--RRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRG------AGRAGAGAA 241
           R Q  PAA  R G +++  R  P A ++     R   G    RRG      A  AGA + 
Sbjct: 410 RAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESR 469

Query: 242 ACGRRGRIAAPLSGVVQKASYLRP---KNLPRLLSMPSAAARPCGAALPRSGFSGRPRGR 298
              ++GR  A  +G   +   L+    KNL R      AA     AA  +S    +PR +
Sbjct: 470 GDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQ 529

Query: 299 GGAAAGRGSR-----------------GEHPACGVGLARGTAPQPASTW---ALAARPRA 338
             A AG  SR                   H   G   +RG        W   A AA+ R 
Sbjct: 530 KPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRG 589

Query: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPK 398
           GG     +  Q+  A   G  ++R G G       + W     RQ+       S +++P 
Sbjct: 590 GGDKQPGW--QKAAA---GVTKSRSGDGGK-----KAW-----RQKAAGTGAKS-RKKPW 633

Query: 399 RRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGS 458
           RR       G   A     AW  GA +    R +G +Q     PR  +  PA++G  + +
Sbjct: 634 RR-------GQKDAAAAEKAWATGATS----RGSGGKQ-----PRWQK--PAAAGSESSA 675

Query: 459 AAGRGWDPGGGSRARRRAARGRG 481
           AA  G +     + RRR A+ RG
Sbjct: 676 AAAVGQEAEARKKPRRRRAKSRG 698



 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 109/423 (25%), Positives = 146/423 (34%), Gaps = 82/423 (19%)

Query: 140 GRRSC----GREGQGRG-GRRRRAADTLFQLGPAWPALPAPAAG-RALGTDEPLALRGQC 193
           G R C    GR G G   G              A PAL A AAG + LG+ +    R + 
Sbjct: 5   GHRQCNQAAGRAGPGAPLGAALARTPVELAAESAAPALSAAAAGVKILGSGDKKLRRQKA 64

Query: 194 GPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGR---AGAGAAACGRRGRIA 250
               ++   + Q + A     A     + A    A  RG G    A AG  + G RGR  
Sbjct: 65  AAGGKKARLRGQ-KGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGGRGRKP 123

Query: 251 APLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGE 310
                  QKA+    K  PR  +  SAAA                   G    G G++  
Sbjct: 124 RRRG---QKAAATGSKK-PRWRAQKSAAA-------------------GSKNRGAGAQKA 160

Query: 311 HPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR--------TR 362
             A GV    G  PQ A+  A  A+ R+G     R    RG   + G++R        TR
Sbjct: 161 AAAAGVKSQGGEKPQKAA--AAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTR 218

Query: 363 DGAGNHASEP---------ARVWSPPPRRQRPR----------RLPRASLQEEPKRRPPC 403
            G       P          R     P++QR R          R+ ++    + K R   
Sbjct: 219 GGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQG 278

Query: 404 ARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGG-----PASSGWHAGS 458
              + AG  R G A     A   P A+  G R     G + PR G     P   G  A  
Sbjct: 279 QNAALAGAKRRGAAT----AGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATK 334

Query: 459 AAGRGWDPGGGSR----------ARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAA 508
           AA  G   GGG +           +++  RG+   R   S+  A+  G     + LR A 
Sbjct: 335 AAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGG-DKKGLREAK 393

Query: 509 GRG 511
            RG
Sbjct: 394 RRG 396



 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 95/390 (24%), Positives = 136/390 (34%), Gaps = 58/390 (14%)

Query: 139 GGRRSCGREGQGRG--GRRRRAADTLFQLGPAWPALPAPAAG-RALGTDEPLALRGQCGP 195
           GG +   R+GQ     G +RR A T    G    A      G ++LG   P   RG   P
Sbjct: 269 GGDKKLRRQGQNAALAGAKRRGAATA---GEKPAAKGRGGRGPKSLGGQNPRWGRGGKKP 325

Query: 196 AARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAP-------RRGAGRAGAGAAACGRRGR 248
             RRG   ++   A  A       G+    ++         RRG       A+A G + R
Sbjct: 326 R-RRG---QKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSR 381

Query: 249 IAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSR 308
                 G+ +       +  PR  + P   A+   AA PR G S +PR RG  AA   SR
Sbjct: 382 GGGDKKGLREAKRRGDGRKKPRWQN-PRRRAQKAPAAKPRGGGSKKPRRRGPKAA--KSR 438

Query: 309 GEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNH 368
           G     G G       +P      A +  A     SR + ++G            G G  
Sbjct: 439 GGKSRSGGG------KKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLK 492

Query: 369 ASEPARVWSPPPRRQRPRRLPRAS-----LQEEPKRRPPCARPS----GAGPAREGPAAW 419
           +     +W    + +       A+      +++P+R+ P    +    G   +R+   A 
Sbjct: 493 SHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAV 552

Query: 420 PGGAPTPPHARPTGRRQDPEPGPRAPR-------------GGPASSGWH---AGSAAGRG 463
             GA +       G +Q    G   PR             GG    GW    AG    R 
Sbjct: 553 AAGATSHGGG---GNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRS 609

Query: 464 WDPGGGSRARRRAARGRGCLRSARSSPHAR 493
            D  GG +A R+ A G G    +R  P  R
Sbjct: 610 GD--GGKKAWRQKAAGTGA--KSRKKPWRR 635


>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
          Length = 703

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 85/345 (24%), Positives = 107/345 (31%), Gaps = 47/345 (13%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 412

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 413 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 452

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 453 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 505

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 506 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 565

Query: 372 PAR-VWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAG-PAREGPAAWPGGAPTPPHA 429
             + V  P               Q E   R P   P  +G   R GP   PG    P  A
Sbjct: 566 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 625

Query: 430 RPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
            P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 626 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 670



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 63/229 (27%), Positives = 78/229 (34%), Gaps = 52/229 (22%)

Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
           + MP     P  A L   G    PRG  G    RG  G     G+    G  P P     
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193

Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWS-------------- 377
           L   P   G      + Q+G   Q G+   R+     +S PA + S              
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRECL---SSMPAALRSSQIIALKLLPLLNS 245

Query: 378 ----PPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHAR 430
               PPP   RR       +AS+Q  P        P   GP+  GP   PG    P    
Sbjct: 246 VRLAPPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMG 294

Query: 431 PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
           P G      PGP  P+G P   G+H G    RG  PG   +   + A G
Sbjct: 295 PPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 336


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 78/267 (29%), Positives = 96/267 (35%), Gaps = 47/267 (17%)

Query: 276 SAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAAR 335
           S+AA    ++ P  GF   P  R  AA     R    A    L R  A  PA T ALA  
Sbjct: 41  SSAAAAASSSFPPPGFIHPPSSR--AAVHSRLRAAPAAAPRLLPRVLAGAPARTGALAG- 97

Query: 336 PRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVW------SPP--PRRQRPR- 386
                   SR  A    AH              A+   R W      SPP  PR + P  
Sbjct: 98  --------SRLRAAAAAAHDQ----------EAAAPTGRRWRRRPGPSPPLQPRSRHPHT 139

Query: 387 RLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDP--EPGPRA 444
           R PRA  +  P R PP  RP     A+  P      +P P  +R  G    P  +P PRA
Sbjct: 140 RYPRAVPEATPLRPPPGTRPR----AKSRPGC--RSSPFPARSRTPGEAGPPRGDPRPRA 193

Query: 445 PRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLL 504
           PR G       A         P  G R  +RAA G+G      ++P  +P     + R  
Sbjct: 194 PRPGDHPRRSPALRETPSLSPPSPGRRNGKRAA-GKG------TTPQPQPPPPPCATRRE 246

Query: 505 RSAAGRGPSLDSREVRVLIERGCQWWF 531
              A R  + D    R  + R   W F
Sbjct: 247 EDMALR--TRDRTSSRGTVFRAADWGF 271



 Score = 37.4 bits (85), Expect = 0.043
 Identities = 80/301 (26%), Positives = 100/301 (33%), Gaps = 48/301 (15%)

Query: 173 PAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWA-----PR--AHSPA--GRLA 223
           P  A+  A          G   P + R     +LR AP A     PR  A +PA  G LA
Sbjct: 37  PRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRAAPAAAPRLLPRVLAGAPARTGALA 96

Query: 224 LGLIAPRRGAGRAGAGAAACGRRGRI----AAPLSG-----------VVQKASYLRPK-- 266
              +     A      AA  GRR R     + PL              V +A+ LRP   
Sbjct: 97  GSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQPRSRHPHTRYPRAVPEATPLRPPPG 156

Query: 267 NLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQP 326
             PR  S P   + P  A     G +G PRG     A R   G+HP     L    +  P
Sbjct: 157 TRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAPR--PGDHPRRSPALRETPSLSP 214

Query: 327 ASTWALAARPRAG-GTWTSRFEAQRGCA---HQDGQRRTRDGAGNHASE-PARVWSPPPR 381
            S      +  AG GT          CA    +D   RTRD   +  +   A  W     
Sbjct: 215 PSPGRRNGKRAAGKGTTPQPQPPPPPCATRREEDMALRTRDRTSSRGTVFRAADWGFGRS 274

Query: 382 RQRPRRLP---RASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDP 438
            Q  R L      +L  +P           A   R G  AW G    P  A P   +  P
Sbjct: 275 EQHLRGLTLIISCTLSHKP-----------ASLRRSGTQAW-GPRGLPLRATPESFKGSP 322

Query: 439 E 439
           +
Sbjct: 323 D 323


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 101/379 (26%), Positives = 126/379 (33%), Gaps = 92/379 (24%)

Query: 229  PRRGAGRAGAGAAACGRRGRIAAPL-------SGVVQKASYLRP---KNLPRLLSMPSAA 278
            P RG G  GAG    G R R   P            Q+   LR      +P  L   ++A
Sbjct: 1302 PERGGGAGGAGLHFAGHRRREEGPAPTGSRPRGAADQELELLRECLGAAVPARLRKVASA 1361

Query: 279  ARPCGAALP-------------------RSGFSGRPRGRGGAAAG-----RGSRGEHPAC 314
              P   ALP                        G P     AA+      +G   + P  
Sbjct: 1362 LVPGRRALPVPVYMLVPAPAPAQEDDSCTDSAEGTPVNFSSAASLSDETLQGPPRDQPGG 1421

Query: 315  GVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGC------------------AHQD 356
              G  R T    ++  A+  R +AGG   S  E  RG                   A +D
Sbjct: 1422 PAGRQRPTGRPTSARQAMGHRHKAGGAGRSA-EQSRGAGKNRAGLELPLGRPPSAPADKD 1480

Query: 357  GQR--RTR-DGA------------------GNHASEPARVWSPPPRRQRPRRLPRASLQE 395
            G +  RTR DGA                  GN + E     +P P  +R   +PRA  +E
Sbjct: 1481 GSKPGRTRGDGALQSLCLTTPTEEAVYCFYGNDSDEEPPAAAPTPTHRRTSAIPRAFTRE 1540

Query: 396  EPKRRPPCARPSGAGPAREGPAAWPGGA---PTPP-HARPTGRRQDPEPGPRAPRGGPAS 451
             P+ R     PS A PA   PA          TPP ++  +      EP P  P   PA 
Sbjct: 1541 RPQGRKEAPAPSKAAPAAPPPARTQPSLIADETPPCYSLSSSASSLSEPEPSEP---PAV 1597

Query: 452  SGWHAGSAAGRGWDPGGG--SRARRRAARG--RGCLRSARSSPHARPLGSSRSVRLLRSA 507
                   A  +   PGGG  S    RAA    + C+ SA   P  RP      V  LR  
Sbjct: 1598 HPRGREPAVTKDPGPGGGRDSSPSPRAAEELLQRCISSA--LPRRRP-----PVSGLRRR 1650

Query: 508  AGRGPSLDSREVRVLIERG 526
              R   LD R      ERG
Sbjct: 1651 KPRATRLDERPAEGSRERG 1669



 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 55/187 (29%), Positives = 73/187 (39%), Gaps = 40/187 (21%)

Query: 265  PKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAP 324
            P  +P +         P   A+P  G    PRGR G  AG G+RG      +GL R    
Sbjct: 1927 PVRIPFMQRPARRGPPPLARAVPEPG----PRGRAGTEAGPGARGGR----LGLVR---- 1974

Query: 325  QPASTWALAARPRAGGTWTSRFEAQRGCA---HQDGQRRTRDGAGNHASEPARVWSPPPR 381
                   +A+   +G   + R   +R         G RR R    +  S  +      PR
Sbjct: 1975 -------VASALSSGSESSDRSGFRRQLTFIKESPGLRRRRSELSSAESAASAPQGASPR 2027

Query: 382  RQRPRRLP------------RASLQEEP---KRRPPCARPS-GAGPAREGPAAWPGGAPT 425
            R RP  LP            RA+ ++ P   ++RPP ARPS G  PAR   +  P   P 
Sbjct: 2028 RGRP-ALPAVFLCSSRCEELRAAPRQGPAPARQRPPAARPSPGERPARRTTSESPSRLPV 2086

Query: 426  -PPHARP 431
              P ARP
Sbjct: 2087 RAPAARP 2093



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 74/272 (27%), Positives = 91/272 (33%), Gaps = 73/272 (26%)

Query: 292  SGRPRGRGGAAAGRGSRGEHPACGVGLARGT-------AP--QPASTWALAARPRAGGTW 342
            SG PR   G    RG++   P     L   T       AP  QP  T    A PR     
Sbjct: 1762 SGSPRSPAGPEKPRGTQKTTPGVPAVLRGRTVIYVPSPAPRAQPKGTPGPRATPRKVAPP 1821

Query: 343  TSRFEAQRGCAHQDGQRRTRD-GAGNHASEPARVWSPPPRRQRPRRLPRA---------- 391
                 A        GQ+R+R        SE A +  PP     P RL +           
Sbjct: 1822 CLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATLSQPPRSATPPARLAKTPSSSSSQTSP 1881

Query: 392  SLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHA---------------------- 429
            + Q  P++RPP  + +GA P        PG +P P                         
Sbjct: 1882 ASQPLPRKRPPVTQAAGALPG-------PGASPVPKTPARTLLAKQHKTQRSPVRIPFMQ 1934

Query: 430  RPTGR------RQDPEPGPRAPRG---GPASSGWHAG-----SAAGRGWDPGGGSRARRR 475
            RP  R      R  PEPGPR   G   GP + G   G     SA   G +    S  RR+
Sbjct: 1935 RPARRGPPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQ 1994

Query: 476  AA---------RGRGCLRSARSSPHARPLGSS 498
                       R R  L SA S+  A P G+S
Sbjct: 1995 LTFIKESPGLRRRRSELSSAESAASA-PQGAS 2025


>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
          Length = 717

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 412

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 413 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 452

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 453 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 505

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 506 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 565

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 566 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 625

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 626 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 684



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 63/229 (27%), Positives = 78/229 (34%), Gaps = 52/229 (22%)

Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
           + MP     P  A L   G    PRG  G    RG  G     G+    G  P P     
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193

Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWS-------------- 377
           L   P   G      + Q+G   Q G+   R+     +S PA + S              
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRECL---SSMPAALRSSQIIALKLLPLLNS 245

Query: 378 ----PPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHAR 430
               PPP   RR       +AS+Q  P        P   GP+  GP   PG    P    
Sbjct: 246 VRLAPPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMG 294

Query: 431 PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
           P G      PGP  P+G P   G+H G    RG  PG   +   + A G
Sbjct: 295 PPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 336


>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
          Length = 655

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 304 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 350

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 351 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 390

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 391 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 443

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 444 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 503

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 504 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 563

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 564 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 622



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 44/173 (25%), Positives = 57/173 (32%), Gaps = 18/173 (10%)

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
           P C    A   +P  A    +  R   G   T  F    G    DG +    G       
Sbjct: 115 PGCNCPPAPQGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDG-KPGHPGPKGDMGL 173

Query: 372 PARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTP 426
                 P P+ Q+  +      P    Q +   + P   P   GP+  GP   PG    P
Sbjct: 174 TGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPS--GPLGHPG---LP 228

Query: 427 PHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
               P G      PGP  P+G P   G+H G    RG  PG   +   + A G
Sbjct: 229 GPMGPPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 274


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 306 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 352

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 353 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 392

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 393 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 445

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 446 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 505

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 506 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 565

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 566 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 624



 Score = 30.4 bits (67), Expect = 5.3
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 394 QEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSG 453
           Q +   + P   P   GP+  GP   PG    P    P G      PGP  P+G P   G
Sbjct: 203 QSQASIQGPPGPPGPPGPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGDPGIQG 252

Query: 454 WHAGSAAGRGWDPGGGSRARRRAARG 479
           +H G    RG  PG   +   + A G
Sbjct: 253 YH-GRKGERGM-PGMPGKHGAKGAPG 276


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 309 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 355

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 356 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 395

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 396 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 448

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 449 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 508

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 509 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 568

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 569 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 627



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 21/106 (19%)

Query: 377 SPPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTG 433
           +PPP   RR       +AS+Q  P        P   GP+  GP   PG    P    P G
Sbjct: 192 APPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPG 240

Query: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
                 PGP  P+G P   G+H G    RG  PG   +   + A G
Sbjct: 241 L-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 279


>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
          Length = 664

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 313 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 359

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 360 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 399

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 400 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 452

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 453 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 512

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 513 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 572

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 573 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 631



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 17/107 (15%)

Query: 378 PPPRRQRPRR-----LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPT 432
           P P+ Q+  +      P    Q +   + P   P   GP+  GP   PG    P    P 
Sbjct: 189 PGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPS--GPLGHPG---LPGPMGPP 243

Query: 433 GRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
           G      PGP  P+G P   G+H G    RG  PG   +   + A G
Sbjct: 244 GL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 283



 Score = 29.6 bits (65), Expect = 9.0
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 394 QEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSG 453
           +E PK  P C  P    PA +GP   PG   +P  A  +        GPR P G P + G
Sbjct: 108 REAPKTSPGCNCP----PAFQGPTGRPGLPGSPGDAGLS------IIGPRGPPGQPGTRG 157

Query: 454 W 454
           +
Sbjct: 158 F 158


>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
          Length = 676

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 325 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 371

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 372 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 411

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 412 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 464

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 465 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 524

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 525 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 584

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 585 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 643



 Score = 33.5 bits (75), Expect = 0.63
 Identities = 48/190 (25%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 295 PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAH 354
           P GR G    +G+ G     G       +P  A    +  R   G   T  F    G   
Sbjct: 126 PTGRPGLPGDKGAIGMPGRVG-------SPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIG 178

Query: 355 QDGQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCARPSGA 409
            DG +    G             P P+ Q+  +      P    Q +   + P   P   
Sbjct: 179 LDG-KPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPP 237

Query: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGG 469
           GP+  GP   PG    P    P G      PGP  P+G P   G+H G    RG  PG  
Sbjct: 238 GPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMP 285

Query: 470 SRARRRAARG 479
            +   + A G
Sbjct: 286 GKHGAKGAPG 295


>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
          Length = 688

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 337 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 383

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 384 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 423

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 424 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 476

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 477 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 536

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 537 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 596

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 597 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 655



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 21/106 (19%)

Query: 377 SPPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTG 433
           +PPP   RR       +AS+Q  P        P   GP+  GP   PG    P    P G
Sbjct: 220 APPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPG 268

Query: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
                 PGP  P+G P   G+H G    RG  PG   +   + A G
Sbjct: 269 L-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 307


>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
          Length = 695

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 344 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 390

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 391 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 430

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 431 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 483

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 484 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 543

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 544 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 603

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 604 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 662



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 54/208 (25%), Positives = 70/208 (33%), Gaps = 32/208 (15%)

Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
           + MP     P  A L   G    PRG  G    RG  G     G+    G  P P     
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193

Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRA 391
           L   P   G      + Q+G   Q G+   R+             S P   +  + +   
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRECLS----------SMPAALRSSQIIALK 238

Query: 392 SLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPAS 451
             Q +   + P   P   GP+  GP   PG    P    P G      PGP  P+G P  
Sbjct: 239 GEQSQASIQGPPGPPGPPGPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGDPGI 288

Query: 452 SGWHAGSAAGRGWDPGGGSRARRRAARG 479
            G+H G    RG  PG   +   + A G
Sbjct: 289 QGYH-GRKGERGM-PGMPGKHGAKGAPG 314


>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
          Length = 698

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 347 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 393

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 394 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 433

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 434 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 486

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 487 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 546

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 547 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 606

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 607 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 665



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 60/211 (28%), Positives = 74/211 (35%), Gaps = 35/211 (16%)

Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
           + MP     P  A L   G    PRG  G    RG  G     G+    G  P P     
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193

Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPP---RRQRPRRL 388
           L   P   G      + Q+G   Q G+   R     ++   A    PPP   RR      
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRLLPLLNSVRLA----PPPVIKRRTFQGEQ 244

Query: 389 PRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGG 448
            +AS+Q  P        P   GP+  GP   PG    P    P G      PGP  P+G 
Sbjct: 245 SQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGD 288

Query: 449 PASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
           P   G+H G    RG  PG   +   + A G
Sbjct: 289 PGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 317


>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
          Length = 700

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)

Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
           LLG  G +   G   G GRG              P  P LP P   +   G D  +   G
Sbjct: 349 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 395

Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
           Q G    RG A EQ                   G   P+   G  G G       G I  
Sbjct: 396 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 435

Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
            L   ++  + + P  LP  +  P A   P      + G  G P G  G    +G RG+ 
Sbjct: 436 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 488

Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
              G    +G   +             G       + + G A   G++      GN  +E
Sbjct: 489 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 548

Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
                 P     PP  +  P     A L         Q E   R P   P  +G   R G
Sbjct: 549 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 608

Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
           P   PG    P  A P G R    +PG   P G     G H   G    RG     GSR
Sbjct: 609 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 667



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 21/106 (19%)

Query: 377 SPPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTG 433
           +PPP   RR       +AS+Q  P        P   GP+  GP   PG    P    P G
Sbjct: 232 APPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPG 280

Query: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
                 PGP  P+G P   G+H G    RG  PG   +   + A G
Sbjct: 281 L-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 319


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,191,467
Number of Sequences: 37866
Number of extensions: 2234530
Number of successful extensions: 20856
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 1723
Number of HSP's that attempted gapping in prelim test: 13326
Number of HSP's gapped (non-prelim): 6921
length of query: 647
length of database: 18,247,518
effective HSP length: 109
effective length of query: 538
effective length of database: 14,120,124
effective search space: 7596626712
effective search space used: 7596626712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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