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Search of human proteins with 239748695
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748695 PREDICTED: hypothetical protein [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748695 PREDICTED: hypothetical protein [Homo sapiens] 220 2e-58
gi|239742718 PREDICTED: hypothetical protein XP_002342622 [Homo ... 220 2e-58
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 42 1e-04
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 42 1e-04
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 42 1e-04
gi|102469037 jun D proto-oncogene [Homo sapiens] 40 4e-04
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 40 5e-04
gi|239755652 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|239750190 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|239744495 PREDICTED: hypothetical protein XP_002343166 [Homo ... 39 0.001
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.003
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 37 0.003
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.003
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 37 0.003
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 37 0.003
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 37 0.003
gi|62865887 G protein-coupled receptor 54 [Homo sapiens] 37 0.004
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 36 0.006
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 36 0.006
>gi|239748695 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 220 bits (560), Expect = 2e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MGGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSA 60
MGGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSA
Sbjct: 1 MGGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSA 60
Query: 61 AAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
AAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL
Sbjct: 61 AAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
>gi|239742718 PREDICTED: hypothetical protein XP_002342622 [Homo
sapiens]
Length = 101
Score = 220 bits (560), Expect = 2e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MGGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSA 60
MGGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSA
Sbjct: 1 MGGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSA 60
Query: 61 AAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
AAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL
Sbjct: 61 AAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 45.8 bits (107), Expect = 7e-06
Identities = 33/105 (31%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 4 PSRGRPGWRRC---PCGP------AAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAG 54
P R RP W R P P + P P P H C R R +
Sbjct: 32 PERDRPDWPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCP 91
Query: 55 QSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAP 99
P A A CPPPP G +P RC R P+LL AP
Sbjct: 92 APGPCAQPAGTCPPPPTGEKQPRPHGFRC--SHGSKRAPALLGAP 134
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 45.8 bits (107), Expect = 7e-06
Identities = 33/105 (31%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 4 PSRGRPGWRRC---PCGP------AAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAG 54
P R RP W R P P + P P P H C R R +
Sbjct: 32 PERDRPDWPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCP 91
Query: 55 QSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAP 99
P A A CPPPP G +P RC R P+LL AP
Sbjct: 92 APGPCAQPAGTCPPPPTGEKQPRPHGFRC--SHGSKRAPALLGAP 134
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 45.8 bits (107), Expect = 7e-06
Identities = 33/105 (31%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 4 PSRGRPGWRRC---PCGP------AAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAG 54
P R RP W R P P + P P P H C R R +
Sbjct: 32 PERDRPDWPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCP 91
Query: 55 QSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAP 99
P A A CPPPP G +P RC R P+LL AP
Sbjct: 92 APGPCAQPAGTCPPPPTGEKQPRPHGFRC--SHGSKRAPALLGAP 134
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/102 (37%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 4 PSRGR---PGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQ--PAGQSEP 58
P RGR PG G P RRR L PP S A + V GA R R P + P
Sbjct: 78 PGRGRGGLPGAAALGAGAQQPRRRR-LAQPPGSRAPLQV-GGAPRRRAHLTGGPPRRRPP 135
Query: 59 SAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
AAA P LRP R R RL +R+P L P
Sbjct: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAP 177
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/102 (37%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 4 PSRGR---PGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQ--PAGQSEP 58
P RGR PG G P RRR L PP S A + V GA R R P + P
Sbjct: 78 PGRGRGGLPGAAALGAGAQQPRRRR-LAQPPGSRAPLQV-GGAPRRRAHLTGGPPRRRPP 135
Query: 59 SAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
AAA P LRP R R RL +R+P L P
Sbjct: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAP 177
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/102 (37%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 4 PSRGR---PGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQ--PAGQSEP 58
P RGR PG G P RRR L PP S A + V GA R R P + P
Sbjct: 78 PGRGRGGLPGAAALGAGAQQPRRRR-LAQPPGSRAPLQV-GGAPRRRAHLTGGPPRRRPP 135
Query: 59 SAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
AAA P LRP R R RL +R+P L P
Sbjct: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAP 177
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 40.0 bits (92), Expect = 4e-04
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 2 GGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAA 61
GGPS G P G AP P P A+ ++ GA A A A +EP
Sbjct: 167 GGPSGTATG--SAPPGELAPAAAAPEAPVYANLSSYA--GGAGGAGGAATVAFAAEP--- 219
Query: 62 AAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
PPPP GAL PPR P VPS +PPL
Sbjct: 220 -VPFPPPPPPGALGPPRLAALKDEPQTVPDVPSFGESPPL 258
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 39.7 bits (91), Expect = 5e-04
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 2 GGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAA 61
GG + RR P P+R P PPP H SG R + A PS A
Sbjct: 263 GGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPH-----NSGPPPPPARGRGAPPPPPSRA 317
Query: 62 AAAVCPPPPRG----ALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
A PPPP A+ PP R PPP + S S PP
Sbjct: 318 PTAAPPPPPPSRPSVAVPPPPPN-RMYPPPPPALPSSAPSGPP 359
>gi|239755652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 7 GRPGW---RRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAA 63
GRPG R P P+R R L PPP S A V PA P A
Sbjct: 62 GRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAPP 121
Query: 64 AVCPPPPRGALRPPRRRCRCRLPPP 88
A+ P P+ P CR R PPP
Sbjct: 122 AL--PSPQSWFAP----CRLRFPPP 140
>gi|239750190 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 7 GRPGW---RRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAA 63
GRPG R P P+R R L PPP S A V PA P A
Sbjct: 62 GRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAPP 121
Query: 64 AVCPPPPRGALRPPRRRCRCRLPPP 88
A+ P P+ P CR R PPP
Sbjct: 122 AL--PSPQSWFAP----CRLRFPPP 140
>gi|239744495 PREDICTED: hypothetical protein XP_002343166 [Homo
sapiens]
Length = 158
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 7 GRPGW---RRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAA 63
GRPG R P P+R R L PPP S A V PA P A
Sbjct: 62 GRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAPP 121
Query: 64 AVCPPPPRGALRPPRRRCRCRLPPP 88
A+ P P+ P CR R PPP
Sbjct: 122 AL--PSPQSWFAP----CRLRFPPP 140
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 1 MGGPSRGRPGWRRCPCGPAAPTRRRP-----LLPPPASHAAMCVRSGAVRARVRAQPAGQ 55
+ P+R P R P PA P++ +P L PP + R A A +
Sbjct: 249 LSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPP----RKDAAPALGPLSSSPL 304
Query: 56 SEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
+ PS +AA PP P C+L P P SAPP
Sbjct: 305 ATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPP 349
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 18 PAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAAA--VCPPPPRGALR 75
P +P + P PP + + A P Q+ PS AA V P PP
Sbjct: 443 PPSPPVQAPFSPPASPPVSPS-----------ATPPSQAPPSLAAPPLQVPPSPPASPPM 491
Query: 76 PPRRRCRCRLPPPCSRVPSLLSAPP 100
P + PPP + P L+ PP
Sbjct: 492 SPSATPPPQAPPPLAAPPLQLAKPP 516
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 15 PCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAAAVCPPPPRGAL 74
P P+AP + L PPA+ + S Q PS + + PPP+
Sbjct: 342 PPSPSAPPSLQTLPSPPATPPSQATTS---LGSPTLQATHSFLPSPPLSPLATPPPQA-- 396
Query: 75 RPPRRRCRCRLPPPCSRVPSLLSAPPL 101
PP PP PS ++PPL
Sbjct: 397 -PPALAL-----PPLQAPPSPPASPPL 417
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 4 PSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA- 62
PS P + P PA+P PPP + + A A+P Q+ P+ A
Sbjct: 472 PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPL-----AAPPLQLAKPPPQAPPALATP 526
Query: 63 ---AAVCPP---PPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
A PP P + P L P + P +L+AP L
Sbjct: 527 PLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLL 571
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 37.4 bits (85), Expect = 0.003
Identities = 34/92 (36%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 2 GGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAA 61
GGP G P +A RRRP P + R GA R VR Q
Sbjct: 144 GGPGLPPRGKASGPARDSAQQRRRPTRRPRGT------RGGARRPGVRGQ---------G 188
Query: 62 AAAVCPPPPRGALRPPRRRCRCRLPPPCSRVP 93
AAAV P PR PP R R PPP R P
Sbjct: 189 AAAVGPTGPRPTGAPPSR----RTPPPGPRRP 216
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
GP+ G P R CG RRR A R+ R R A+ +S S
Sbjct: 98 GPAPGAPR-ARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSLARCLPRSVGSCVR 156
Query: 63 AAVCPPPPRGALRPPRRRCRCR-----LPPPCSRVPSLLSAPP 100
+V P PR R RR CRC LP P P L SA P
Sbjct: 157 PSVGPSLPR---RHCRRHCRCHCRRRPLPKPPPLQPRLGSASP 196
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 37.4 bits (85), Expect = 0.003
Identities = 41/100 (41%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 2 GGPSRGRPGW--RRCPCGPA--APTR--RRPLLPP----PASHAAMCVRSGAVRARVRAQ 51
G P RG PG P PA AP + RRP P AS A VR+ A A V A
Sbjct: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAA-VAAG 151
Query: 52 P---AGQSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPP 88
P A Q EP AA AA CP P A P R C P
Sbjct: 152 PGRSAPQREPRAAWAA-CPAGPSSAAGPERGHVSCAADEP 190
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 52 PAGQSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSR 91
P G+ P AAA PP A P RR C P C R
Sbjct: 94 PPGRGGPGQVAAAAPAPPASWAPPQPGRRPTC---PGCCR 130
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 37.4 bits (85), Expect = 0.003
Identities = 34/92 (36%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 2 GGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAA 61
GGP G P +A RRRP P + R GA R VR Q
Sbjct: 144 GGPGLPPRGKASGPARDSAQQRRRPTRRPRGT------RGGARRPGVRGQ---------G 188
Query: 62 AAAVCPPPPRGALRPPRRRCRCRLPPPCSRVP 93
AAAV P PR PP R R PPP R P
Sbjct: 189 AAAVGPTGPRPTGAPPSR----RTPPPGPRRP 216
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 37.4 bits (85), Expect = 0.003
Identities = 41/100 (41%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 2 GGPSRGRPGW--RRCPCGPA--APTR--RRPLLPP----PASHAAMCVRSGAVRARVRAQ 51
G P RG PG P PA AP + RRP P AS A VR+ A A V A
Sbjct: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAA-VAAG 151
Query: 52 P---AGQSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPP 88
P A Q EP AA AA CP P A P R C P
Sbjct: 152 PGRSAPQREPRAAWAA-CPAGPSSAAGPERGHVSCAADEP 190
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 52 PAGQSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSR 91
P G+ P AAA PP A P RR C P C R
Sbjct: 94 PPGRGGPGQVAAAAPAPPASWAPPQPGRRPTC---PGCCR 130
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 37.4 bits (85), Expect = 0.003
Identities = 34/92 (36%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 2 GGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAA 61
GGP G P +A RRRP P + R GA R VR Q
Sbjct: 144 GGPGLPPRGKASGPARDSAQQRRRPTRRPRGT------RGGARRPGVRGQ---------G 188
Query: 62 AAAVCPPPPRGALRPPRRRCRCRLPPPCSRVP 93
AAAV P PR PP R R PPP R P
Sbjct: 189 AAAVGPTGPRPTGAPPSR----RTPPPGPRRP 216
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 2 GGPSRGRPGWRRCPCGPAAPT-RRRPLLPPPASHAAMCV---RSGAVRARVRAQPAGQSE 57
GGP R P R P PA P L PPP A C + AV A PAG ++
Sbjct: 100 GGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK 159
Query: 58 PS--AAAAAVCPPPP 70
P+ AA AA P P
Sbjct: 160 PAGPAALAARAGPGP 174
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 13 RCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQ--PAGQSEPSAAAAAVCPPPP 70
R P PA P P +PPPA+ A +GA A A PAG S AA P P
Sbjct: 282 RPPGHPAGPPTAAPAVPPPAA-AQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Query: 71 RGALRPPRRRCRCRLPP--------PCSRVPSLLSAPPL 101
P+R + P P S S++ P +
Sbjct: 341 GVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTM 379
Score = 30.4 bits (67), Expect = 0.31
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 28 LPPPASHAAMCVRSGAVRARVRAQPAGQSEPSA---AAAAVCPPPPRGALRPPRRRCRCR 84
LP PA+ + V A PA S P+A AA A PPPP PP R
Sbjct: 228 LPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPP-----PPAPATLAR 282
Query: 85 LPPPCSRVPSLLSAPP 100
P + P+ A P
Sbjct: 283 PPGHPAGPPTAAPAVP 298
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 17 GPAAPTRR-RPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAAAVCPPPPRGA-- 73
GPAA +P P V + A A P P+A AAA PPPP A
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280
Query: 74 LRPP 77
RPP
Sbjct: 281 ARPP 284
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 15 PCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAAAVCPP 68
P PAAP P PP A A AR PAG P AA AV PP
Sbjct: 255 PSPPAAPAPAAPAAAPPPPPPAP-----ATLARPPGHPAG---PPTAAPAVPPP 300
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 17 GPAAPTRRRPLL---PPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAAAVCPPPPRGA 73
GPAAP P PPPA A R G Q G P P PP
Sbjct: 74 GPAAPAEGAPGAAPEPPPAGRA----RPGGGGP----QRPGPPSPRRPLVPAGPAPPAAK 125
Query: 74 LRPP 77
LRPP
Sbjct: 126 LRPP 129
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 37.4 bits (85), Expect = 0.003
Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 6 RGRPGWRRCPCGPAAPTRRRP--LLPPPASH--AAMCVRSGAVRARVRAQPAGQSEPSAA 61
R RP RR P +P RR P +PPP H + VR R R A +G S S++
Sbjct: 312 RRRPSPRRRP----SPRRRTPPRRMPPPPRHRRSRSPVRR---RRRSSASLSGSSSSSSS 364
Query: 62 AAAVCPP--PPRGALRPPRRRCR---CRLPPPCSRVPSLLSAPP 100
+ + PP PP+ PPR+ R PP PS + PP
Sbjct: 365 SRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPP 408
Score = 34.3 bits (77), Expect = 0.022
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 4 PSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVR-SGAVRARVRAQPAGQSEPSAAA 62
PS P RR P P RRR PPP + R S ++ R P P
Sbjct: 561 PSPAPPPRRRRT--PTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSP-----PPKRR 613
Query: 63 AAVCPPPP--RGALRPPRRRCRCRLPPPCSR 91
A PPPP R + PP +R PPP R
Sbjct: 614 TASPPPPPKRRASPSPPPKRRVSHSPPPKQR 644
Score = 33.1 bits (74), Expect = 0.048
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 12 RRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRA-QPAGQSEPSAAAAAVCPPPP 70
RR P P RRR PPP R+ + R R+ P S P + PPP
Sbjct: 558 RRSPSPAPPPRRRRTPTPPPRR------RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPK 611
Query: 71 R--GALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
R + PP +R PPP RV S PP
Sbjct: 612 RRTASPPPPPKRRASPSPPPKRRVSH--SPPP 641
Score = 28.9 bits (63), Expect = 0.91
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 30 PPASHAAMCVRSGAVRARVRAQPAGQSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPC 89
P SH V++G V R R P+ + PS P + P RR R PPP
Sbjct: 507 PKRSH----VKNGEVGRRRRHSPSRSASPS-------PRKRQKETSPRGRRRRSPSPPPT 555
Query: 90 SRVPSLLSAPP 100
R S APP
Sbjct: 556 RRRRSPSPAPP 566
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/50 (34%), Positives = 20/50 (40%)
Query: 45 RARVRAQPAGQSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPS 94
R R R P+ + + PPP R P R R PPP R PS
Sbjct: 543 RGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPS 592
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.003
Identities = 35/103 (33%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLP----PPASHAAMCVRSGAVRARVRAQPAGQSEP 58
G +R R W R GP AP+ P LP PP + V + A R + GQ+
Sbjct: 41 GRARRRGTWLRVLRGPRAPSPA-PALPARARPPRENRKRAVPARAARGPPKRPAGGQTGG 99
Query: 59 SAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
AA+ PR RPP R R P R SL A PL
Sbjct: 100 VEAASGEERSQPRRPRRPPPAPRRPR--PAPGRRKSLYEAAPL 140
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.003
Identities = 35/103 (33%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLP----PPASHAAMCVRSGAVRARVRAQPAGQSEP 58
G +R R W R GP AP+ P LP PP + V + A R + GQ+
Sbjct: 41 GRARRRGTWLRVLRGPRAPSPA-PALPARARPPRENRKRAVPARAARGPPKRPAGGQTGG 99
Query: 59 SAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
AA+ PR RPP R R P R SL A PL
Sbjct: 100 VEAASGEERSQPRRPRRPPPAPRRPR--PAPGRRKSLYEAAPL 140
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.003
Identities = 35/103 (33%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLP----PPASHAAMCVRSGAVRARVRAQPAGQSEP 58
G +R R W R GP AP+ P LP PP + V + A R + GQ+
Sbjct: 41 GRARRRGTWLRVLRGPRAPSPA-PALPARARPPRENRKRAVPARAARGPPKRPAGGQTGG 99
Query: 59 SAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPPL 101
AA+ PR RPP R R P R SL A PL
Sbjct: 100 VEAASGEERSQPRRPRRPPPAPRRPR--PAPGRRKSLYEAAPL 140
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
G + G R+ P ++P RP LPP S A + P G + PS
Sbjct: 227 GTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRAL------DDKPPPPPPPVG-NRPSIHR 279
Query: 63 AAVCPPPPRGALRP----PRRRCRCRLPPPCSRVPSLLSAPPL 101
AV PPPP+ P PR + PPP PS PPL
Sbjct: 280 EAVPPPPPQNNKPPVPSTPRPSASSQAPPP-PPPPSRPGPPPL 321
Score = 29.6 bits (65), Expect = 0.54
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 4 PSRGRPGWR-RCPCGPAAPTRRRPLLPPPASHA-----AMCVRSGAVRARVRAQPA-GQS 56
PS RP + P P P+R P PP+S + R+ ++ + P+ G+S
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRS 354
Query: 57 EPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
P + PPPP PP R PPP SR S A P
Sbjct: 355 GPLPPPPSERPPPP--VRDPPGRSGPLPPPPPVSRNGSTSRALP 396
Score = 29.3 bits (64), Expect = 0.70
Identities = 29/88 (32%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
GP P R P P R PL PPP R+G+ RA PA PS +
Sbjct: 355 GPLPPPPSERPPPPVRDPPGRSGPLPPPPPVS-----RNGSTS---RALPATPQLPSRSG 406
Query: 63 AAVCPPPPRGALRPPRRRCRCRLPPPCS 90
PR L P R PPP S
Sbjct: 407 VDSPRSGPRPPLPPDRPSAGAPPPPPPS 434
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
G + G R+ P ++P RP LPP S A + P G + PS
Sbjct: 227 GTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRAL------DDKPPPPPPPVG-NRPSIHR 279
Query: 63 AAVCPPPPRGALRP----PRRRCRCRLPPPCSRVPSLLSAPPL 101
AV PPPP+ P PR + PPP PS PPL
Sbjct: 280 EAVPPPPPQNNKPPVPSTPRPSASSQAPPP-PPPPSRPGPPPL 321
Score = 29.6 bits (65), Expect = 0.54
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 4 PSRGRPGWR-RCPCGPAAPTRRRPLLPPPASHA-----AMCVRSGAVRARVRAQPA-GQS 56
PS RP + P P P+R P PP+S + R+ ++ + P+ G+S
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRS 354
Query: 57 EPSAAAAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAPP 100
P + PPPP PP R PPP SR S A P
Sbjct: 355 GPLPPPPSERPPPP--VRDPPGRSGPLPPPPPVSRNGSTSRALP 396
Score = 29.3 bits (64), Expect = 0.70
Identities = 29/88 (32%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 3 GPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
GP P R P P R PL PPP R+G+ RA PA PS +
Sbjct: 355 GPLPPPPSERPPPPVRDPPGRSGPLPPPPPVS-----RNGSTS---RALPATPQLPSRSG 406
Query: 63 AAVCPPPPRGALRPPRRRCRCRLPPPCS 90
PR L P R PPP S
Sbjct: 407 VDSPRSGPRPPLPPDRPSAGAPPPPPPS 434
>gi|62865887 G protein-coupled receptor 54 [Homo sapiens]
Length = 398
Score = 36.6 bits (83), Expect = 0.004
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 5 SRGRPGWRR-CPCGPAAPTR-RRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
S R +RR CPC P P R RRP PA+ A +R G+ A RAQ G S AA
Sbjct: 328 SHFRQAFRRVCPCAPRRPRRPRRPGPSDPAAPHAELLRLGSHPAPARAQKPGSS--GLAA 385
Query: 63 AAVC 66
+C
Sbjct: 386 RGLC 389
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 2 GGPSRGRPGWRRCPCGPAAPTRRRPLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAA 61
GGP G W R PAAP RR PP S +++ S ++R P A
Sbjct: 253 GGPPVGAEAWARRVPQPAAPPRR-----PPQSASSL---SASLR------------PPGA 292
Query: 62 AAAVCPPPPRGALRPPRRRCRCRLPPPCSRVPSLLSAP 99
A P P P + C L PPC+ P + P
Sbjct: 293 PATFLRPSPIPCSSPGPWQSLCGLGPPCAGCPWPTAGP 330
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 36.2 bits (82), Expect = 0.006
Identities = 35/111 (31%), Positives = 38/111 (34%), Gaps = 25/111 (22%)
Query: 2 GGPSRGRPG-----WRRCPCGPAAPTRRRPL---------------LPPPAS----HAAM 37
GG GRPG WR P+ R RPL LPPP S
Sbjct: 134 GGALHGRPGRDARPWRLLSACPSGRPRPRPLPLPLMLMLMLPTLQPLPPPGSARRPRRGR 193
Query: 38 CVRSGAVRAR-VRAQPAGQSEPSAAAAAVCPPPPRGALRPPRRRCRCRLPP 87
R GA A + AG S +AA PPP A P R PP
Sbjct: 194 AGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPPSPACPGPEMETILRNPP 244
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,198,989
Number of Sequences: 37866
Number of extensions: 475508
Number of successful extensions: 5332
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 683
Number of HSP's that attempted gapping in prelim test: 3898
Number of HSP's gapped (non-prelim): 1839
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.