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Search of human proteins with 239748631
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
(45 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens] 94 2e-20
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ... 94 2e-20
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ... 94 2e-20
gi|167555119 thymosin beta15b [Homo sapiens] 63 4e-11
gi|11496273 thymosin-like 8 [Homo sapiens] 63 4e-11
gi|11056061 thymosin, beta 4 [Homo sapiens] 50 3e-07
gi|34013530 thymosin-like 3 [Homo sapiens] 50 4e-07
gi|10863895 thymosin, beta 10 [Homo sapiens] 49 9e-07
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens] 47 3e-06
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 37 0.003
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 37 0.003
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 35 0.013
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 35 0.013
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 35 0.013
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 35 0.013
gi|56550067 cAMP responsive element binding protein 3-like 2 [Ho... 30 0.32
gi|16418355 cAMP responsive element binding protein 3-like 1 [Ho... 29 0.71
gi|14211949 cAMP responsive element binding protein 3-like 3 [Ho... 29 0.71
gi|119395750 keratin 1 [Homo sapiens] 28 1.6
gi|15618995 keratin 71 [Homo sapiens] 28 2.1
gi|109255249 keratin 4 [Homo sapiens] 28 2.1
gi|28173564 keratin 73 [Homo sapiens] 27 2.7
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 27 3.5
gi|47132620 keratin 2 [Homo sapiens] 27 3.5
gi|28372503 keratin 72 isoform 1 [Homo sapiens] 27 4.6
gi|226246665 keratin 72 isoform 2 [Homo sapiens] 27 4.6
gi|226246663 keratin 72 isoform 1 [Homo sapiens] 27 4.6
gi|32567786 keratin 6L [Homo sapiens] 26 6.0
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 26 6.0
gi|221219020 NYD-SP11 protein [Homo sapiens] 26 7.8
>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 94.0 bits (232), Expect = 2e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF 45
MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF 45
>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
Length = 45
Score = 94.0 bits (232), Expect = 2e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF 45
MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF 45
>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
sapiens]
Length = 45
Score = 94.0 bits (232), Expect = 2e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF 45
MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQTF 45
>gi|167555119 thymosin beta15b [Homo sapiens]
Length = 45
Score = 63.2 bits (152), Expect = 4e-11
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
MS KPD+S+V KFDR KLKK N +EKNTL +ETIQQEKE +QT
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
>gi|11496273 thymosin-like 8 [Homo sapiens]
Length = 45
Score = 63.2 bits (152), Expect = 4e-11
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
MS KPD+S+V KFDR KLKK N +EKNTL +ETIQQEKE +QT
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
>gi|11056061 thymosin, beta 4 [Homo sapiens]
Length = 44
Score = 50.4 bits (119), Expect = 3e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
>gi|34013530 thymosin-like 3 [Homo sapiens]
Length = 44
Score = 50.1 bits (118), Expect = 4e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
>gi|10863895 thymosin, beta 10 [Homo sapiens]
Length = 44
Score = 48.9 bits (115), Expect = 9e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
M+ KPDM ++ FD+ KLKK +EKNTL +ETI+QEK
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39
>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
Length = 44
Score = 47.0 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
MS KP M+++ KFD+ KLKK +EKN L +ETI+QE++
Sbjct: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
MS K +M ++ KF + KLKK +EKN +E I+QEK+
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 40
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
MS K +M ++ KF + KLKK +EKN +E I+QEK+
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 40
>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
M++K D+ ++ D+ KLK +KNTL+ +ET +QEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 2 SYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
S K +M ++ KF + KLKK +EKN +E I+QEK+
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 163
>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
M++K D+ ++ D+ KLK +KNTL+ +ET +QEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
M++K D+ ++ D+ KLK +KNTL+ +ET +QEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
>gi|56550067 cAMP responsive element binding protein 3-like 2 [Homo
sapiens]
Length = 520
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P + K + + LKKI K KN + QE+ +++KEY+ +
Sbjct: 282 PTKLPLSKSEEKALKKIRRKIKNKISAQESRRKKKEYMDS 321
>gi|16418355 cAMP responsive element binding protein 3-like 1 [Homo
sapiens]
Length = 519
Score = 29.3 bits (64), Expect = 0.71
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQ 43
P + K + + LK++ K KN + QE+ +++KEY++
Sbjct: 278 PTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVE 316
>gi|14211949 cAMP responsive element binding protein 3-like 3 [Homo
sapiens]
Length = 461
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYI 42
P + K++ LKKI K +N QE+ +++KEYI
Sbjct: 231 PTQLPLTKYEERVLKKIRRKIRNKQSAQESRKKKKEYI 268
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ KV +RE++K +NN+ + + ++Q+ + +QT
Sbjct: 171 PEIQKVKSREREQIKSLNNQFASFIDKVRFLEQQNQVLQT 210
>gi|15618995 keratin 71 [Homo sapiens]
Length = 523
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ KV +RE++K +NNK + + ++Q+ + ++T
Sbjct: 121 PEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 160
>gi|109255249 keratin 4 [Homo sapiens]
Length = 594
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ KV +RE++K +NNK + + + ++Q+ + ++T
Sbjct: 202 PEIQKVRTEEREQIKLLNNKFASFIDKVQFLEQQNKVLET 241
>gi|28173564 keratin 73 [Homo sapiens]
Length = 540
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ KV +RE++K +NNK + + ++Q+ + ++T
Sbjct: 123 PEIQKVRAQEREQIKVLNNKFASFIDKVRFLEQQNQVLET 162
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
MS K + +G F+R K K INN EKNT + +Q K
Sbjct: 743 MSEKQEQLYLGLFNRLK-KSINNLEKNTEMCNVMMQLRK 780
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ V +RE++K +NNK + + ++Q+ + +QT
Sbjct: 169 PEIQNVKAQEREQIKTLNNKFASFIDKVRFLEQQNQVLQT 208
>gi|28372503 keratin 72 isoform 1 [Homo sapiens]
Length = 511
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ +V +RE++K +NNK + + ++Q+ + ++T
Sbjct: 116 PEIQRVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 155
>gi|226246665 keratin 72 isoform 2 [Homo sapiens]
Length = 469
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ +V +RE++K +NNK + + ++Q+ + ++T
Sbjct: 116 PEIQRVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 155
>gi|226246663 keratin 72 isoform 1 [Homo sapiens]
Length = 511
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ +V +RE++K +NNK + + ++Q+ + ++T
Sbjct: 116 PEIQRVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 155
>gi|32567786 keratin 6L [Homo sapiens]
Length = 535
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 5 PDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
P++ +V +RE++K +NNK + + ++Q+ + ++T
Sbjct: 133 PEIQRVRTQEREQIKTLNNKFASFIDKVRFLEQQNKVLET 172
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 4 KPDMSKVGKFDREKLKKINNKEK--NTLLPQETIQQEKEYIQTF 45
K D K+ ++E K+IN+KEK + LL Q T ++ K TF
Sbjct: 244 KEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTF 287
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 9 KVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
+V K + EK KK K+K + +E + +EKE I +
Sbjct: 2279 QVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKEEIMS 2314
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,610,212
Number of Sequences: 37866
Number of extensions: 45678
Number of successful extensions: 245
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 31
length of query: 45
length of database: 18,247,518
effective HSP length: 19
effective length of query: 26
effective length of database: 17,528,064
effective search space: 455729664
effective search space used: 455729664
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.