Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMSL3 Sequence: fasta or formatted (44aa) NCBI GI: 34013530
Description:

thymosin-like 3

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          2           1
 C cysteine            0.0          0           0
 D aspartate           6.8          3           1
 E glutamate          18.2          8           1
 F phenylalanine       2.3          1           1
 G glycine             2.3          1           1
 H histidine           0.0          0           0
 I isoleucine          4.5          2           1
 K lysine             20.5          9           2
 L leucine             4.5          2           1
 M methionine          4.5          2           1
 N asparagine          2.3          1           1
 P proline             9.1          4           1
 Q glutamine           6.8          3           1
 R arginine            0.0          0           0
 S serine              6.8          3           1
 T threonine           6.8          3           1
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thymosin-like 3 
TMSB4X                0.955   thymosin, beta 4 
TMSB4Y                0.848   thymosin, beta 4, Y chromosome 
TMSB10                0.667   thymosin, beta 10 
TMSB15B               0.667   thymosin beta15b 
TMSB15A               0.667   thymosin-like 8 
LOC100290275          0.652   PREDICTED: hypothetical protein XP_002347030 
LOC100289349          0.652   PREDICTED: hypothetical protein XP_002342871 
LOC100293539          0.621   PREDICTED: similar to ribosomal protein 10 
LOC100292284          0.379   PREDICTED: hypothetical protein 
LOC100290455          0.379   PREDICTED: hypothetical protein XP_002346748 
LOC100287135          0.379   PREDICTED: hypothetical protein XP_002342605 
LOC100131433          0.242   PREDICTED: similar to thymosin, beta 10 
LOC100131433          0.242   PREDICTED: similar to thymosin, beta 10 
LOC100131433          0.242   PREDICTED: similar to thymosin, beta 10 
ST18                  0.030   suppression of tumorigenicity 18 
UPF3B                 0.030   UPF3 regulator of nonsense transcripts homolog B iso...
PRKRIP1               0.030   PRKR interacting protein 1 (IL11 inducible) 
ESF1                  0.015   ABT1-associated protein 
PRPF40B               0.015   Huntingtin interacting protein C isoform 2 
PRPF40B               0.015   Huntingtin interacting protein C isoform 1 
WDR87                 0.015   NYD-SP11 protein 
HDAC1                 0.015   histone deacetylase 1 
LOC728741             0.015   PREDICTED: hypothetical protein 
LOC728734             0.015   PREDICTED: similar to NPIP-like protein ENSP0000028...
NPIPL1                0.015   PREDICTED: nuclear pore complex interacting protein...
DNAH12                0.015   dynein heavy chain domain 2 isoform 1 
MAP1B                 0.015   microtubule-associated protein 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press