Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289349 Sequence: fasta or formatted (158aa) NCBI GI: 239743536
Description:

PREDICTED: hypothetical protein XP_002342871

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          9           2
 C cysteine            3.2          5           1
 D aspartate           2.5          4           1
 E glutamate           7.0         11           1
 F phenylalanine       7.0         11           1
 G glycine             7.6         12           2
 H histidine           3.8          6           1
 I isoleucine          5.1          8           1
 K lysine             12.7         20           2
 L leucine             6.3         10           1
 M methionine          3.2          5           1
 N asparagine          3.2          5           1
 P proline             4.4          7           1
 Q glutamine           5.7          9           1
 R arginine            3.8          6           1
 S serine              6.3         10           2
 T threonine           4.4          7           1
 V valine              5.7          9           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342871 
LOC100290275          1.000   PREDICTED: hypothetical protein XP_002347030 
LOC100293539          0.993   PREDICTED: similar to ribosomal protein 10 
LOC100293009          0.448   PREDICTED: similar to hCG1643102 
LOC100287009          0.448   PREDICTED: hypothetical protein XP_002343545 
LOC100291445          0.444   PREDICTED: hypothetical protein XP_002347772 
RPL10                 0.314   ribosomal protein L10 
RPL10L                0.310   ribosomal protein L10-like protein 
LOC390998             0.301   PREDICTED: similar to hCG1644589 
LOC390998             0.301   PREDICTED: similar to hCG1644589 
LOC390998             0.301   PREDICTED: hypothetical protein LOC390998 
LOC645960             0.271   PREDICTED: similar to hCG1644362 
LOC645960             0.271   PREDICTED: similar to hCG1644362 
LOC645960             0.271   PREDICTED: hypothetical protein LOC645960 
TMSB4X                0.147   thymosin, beta 4 
TMSL3                 0.141   thymosin-like 3 
TMSB4Y                0.131   thymosin, beta 4, Y chromosome 
TMSB15B               0.098   thymosin beta15b 
TMSB15A               0.098   thymosin-like 8 
TMSB10                0.095   thymosin, beta 10 
LOC100292284          0.039   PREDICTED: hypothetical protein 
LOC100290455          0.039   PREDICTED: hypothetical protein XP_002346748 
LOC100287135          0.039   PREDICTED: hypothetical protein XP_002342605 
LOC100131433          0.036   PREDICTED: similar to thymosin, beta 10 
LOC100131433          0.036   PREDICTED: similar to thymosin, beta 10 
LOC100131433          0.036   PREDICTED: similar to thymosin, beta 10 
DEK                   0.016   DEK oncogene isoform 2 
DEK                   0.016   DEK oncogene isoform 1 
ZNF101                0.010   zinc finger protein 101 
GLI3                  0.007   GLI-Kruppel family member GLI3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press