Search of human proteins with 239748175

Search of human proteins with 239748175

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo
sapiens]
         (167 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo ...   361   e-100
gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo ...   318   2e-87
gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo ...   124   3e-29
gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo ...    35   0.039
gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo ...    35   0.039
gi|16933565 protocadherin 21 precursor [Homo sapiens]                  34   0.067
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]      32   0.25 
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa...    30   1.3  
gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens]               29   1.6  
gi|169208749 PREDICTED: similar to hCG2045005 [Homo sapiens]           29   2.1  
gi|169208130 PREDICTED: similar to hCG2045005 [Homo sapiens]           29   2.1  
gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens]    28   2.8  
gi|169212028 PREDICTED: keratin-associated protein 9-2-like 2-li...    27   6.2  
gi|166795252 hypothetical protein LOC23359 [Homo sapiens]              27   8.1  
gi|169210099 PREDICTED: hypothetical protein [Homo sapiens]            27   8.1  
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [...    27   8.1  
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap...    27   8.1  

>gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo
           sapiens]
          Length = 167

 Score =  361 bits (927), Expect = e-100
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MCSVSSSCSKYRLPTCTGSTFSRGGCENFPPFPTYALHSSGTCLTNYKSATADTPRSSGW 60
           MCSVSSSCSKYRLPTCTGSTFSRGGCENFPPFPTYALHSSGTCLTNYKSATADTPRSSGW
Sbjct: 1   MCSVSSSCSKYRLPTCTGSTFSRGGCENFPPFPTYALHSSGTCLTNYKSATADTPRSSGW 60

Query: 61  PCLHVSLKDLRQGNIYISAERASACVVQLCSNGNPETQILVKTPCLGEPALQVPSVGVNW 120
           PCLHVSLKDLRQGNIYISAERASACVVQLCSNGNPETQILVKTPCLGEPALQVPSVGVNW
Sbjct: 61  PCLHVSLKDLRQGNIYISAERASACVVQLCSNGNPETQILVKTPCLGEPALQVPSVGVNW 120

Query: 121 VGHLPCLPTSLPPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSIGG 167
           VGHLPCLPTSLPPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSIGG
Sbjct: 121 VGHLPCLPTSLPPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSIGG 167


>gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo
           sapiens]
          Length = 167

 Score =  318 bits (814), Expect = 2e-87
 Identities = 147/167 (88%), Positives = 153/167 (91%)

Query: 1   MCSVSSSCSKYRLPTCTGSTFSRGGCENFPPFPTYALHSSGTCLTNYKSATADTPRSSGW 60
           MC +SSSCSK R PTC GSTF RGG ENFPPFPTYALHSSG CLTNYK ATADT  SSGW
Sbjct: 1   MCFMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGW 60

Query: 61  PCLHVSLKDLRQGNIYISAERASACVVQLCSNGNPETQILVKTPCLGEPALQVPSVGVNW 120
           PCLHVSLKD  QGNIYISAERASACVVQLCSNGNPETQ+LV+TPCLG+PALQVPSVG NW
Sbjct: 61  PCLHVSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSVGWNW 120

Query: 121 VGHLPCLPTSLPPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSIGG 167
           VGHLPCLPTSLPPGILDPEN+GDVVGNRQVLCRKPRCHPN LCS+GG
Sbjct: 121 VGHLPCLPTSLPPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG 167


>gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo
           sapiens]
          Length = 167

 Score =  124 bits (312), Expect = 3e-29
 Identities = 79/182 (43%), Positives = 87/182 (47%), Gaps = 30/182 (16%)

Query: 1   MCSVSSSCSKYRLPTCTGSTFSRGGCENFP-------------PFPTYALHSSGTCLTNY 47
           MCSVSSSCSK R PTC GSTF   G    P             P      H   T     
Sbjct: 1   MCSVSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRV 60

Query: 48  KSATADTPRSSGWPCLHVSLKDLRQGNIYISAERASAC--VVQLCSNGNPETQILVKTPC 105
             ++    RSS    L            Y+  E  S C   V    + NP+      +  
Sbjct: 61  AMSSCQLERSSPGKYL------------YLGRESFSLCSPAVLKWKSRNPDVGPNTLSWT 108

Query: 106 LGEPALQVPSVGVNWVGHLPCLPTSLPPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSI 165
            G      P  G    GHLPCLPTSL PGILD EN+GDVVGNRQVLCRKPRCHPNPLCS+
Sbjct: 109 AGSSC---PQHGSELGGHLPCLPTSLLPGILDTENQGDVVGNRQVLCRKPRCHPNPLCSL 165

Query: 166 GG 167
           GG
Sbjct: 166 GG 167


>gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo
          sapiens]
          Length = 156

 Score = 34.7 bits (78), Expect = 0.039
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 4  VSSSCSKYRLPTCTGSTFSRGGCENFP 30
          +SSSCSK   PTC GSTF +G     P
Sbjct: 22 MSSSCSKDHPPTCAGSTFGQGRMRELP 48


>gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo
          sapiens]
          Length = 156

 Score = 34.7 bits (78), Expect = 0.039
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 4  VSSSCSKYRLPTCTGSTFSRGGCENFP 30
          +SSSCSK   PTC GSTF +G     P
Sbjct: 22 MSSSCSKDHPPTCAGSTFGQGRMRELP 48


>gi|16933565 protocadherin 21 precursor [Homo sapiens]
          Length = 859

 Score = 33.9 bits (76), Expect = 0.067
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 90  CSNGNPETQILVKTPCLGEPALQVPSVG-VNWVGHLPCLPTSLPPGILDPENKGDVVGN 147
           C+N +PE+ +L + P L  P    PS G   W   +P +  SL P    P  K   +G+
Sbjct: 778 CNNNSPESSLLPRAPALPPPPSVAPSTGAAQWT--VPTVSGSLTPQPTQPPPKPKTMGS 834


>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
          Length = 644

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 61  PCLHVSLKDLRQGNIYISAERASACVVQLCSNGNPETQILVKTPCLGEPALQVPSVGVNW 120
           PCL  SL+++ +    +S+ER S       S GNP + +   +P        +P      
Sbjct: 131 PCLSTSLQEIPKSRGVLSSERGSP-----SSGGNPLSGVASSSP-------NLPHRDAAV 178

Query: 121 VGHLPCLPTSLPP 133
            G  P LP+ LPP
Sbjct: 179 AGSSPRLPSLLPP 191


>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
            sapiens]
          Length = 1819

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 38   HSSGTCLTNYKSATADTPRSSGWPCL-HVSLKDLRQG-NIYISAERASACVVQLCSNGNP 95
            H S   ++  +S +   P    W    HVS   +R G N+   A   S C        N 
Sbjct: 1190 HVSDASISLGESVSDMAPTRPRWNTHGHVSDTSIRVGENVSDVAPIRSRC--------NT 1241

Query: 96   ETQILVKTPCLGEPALQVPSVGVNWVGHLPCLPTSLPPGILDPE 139
               +   +  LGEP   V S    W  H+P  P  +  G L PE
Sbjct: 1242 HGHVSDASISLGEPVSDVVSTRPRWNTHVPIPPPHMVLGALSPE 1285


>gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens]
          Length = 571

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 138 PENKGDVVGNRQVLCRKPRCHPNPLCSIGG 167
           PE++   + ++ VL  +PRC P  LC++GG
Sbjct: 264 PEHR---LSHQTVLMTRPRCAPKVLCAVGG 290


>gi|169208749 PREDICTED: similar to hCG2045005 [Homo sapiens]
          Length = 255

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 31  PFPTYALHSSGTCLTNYKSATADTPRSSGW--PCLHVSLKDLRQGNIYISAE-----RAS 83
           P PT+   S    L +   A  D     GW  P      +D+ +G +   AE     R  
Sbjct: 48  PLPTHLFFS---LLQSRHRAATDYTMMGGWTPPSGAGGAEDVNKGAVQAEAEIMVRSRGR 104

Query: 84  ACVVQLCSNGNPETQ 98
           A  VQLC   +PET+
Sbjct: 105 ARRVQLCPEASPETE 119


>gi|169208130 PREDICTED: similar to hCG2045005 [Homo sapiens]
          Length = 255

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 31  PFPTYALHSSGTCLTNYKSATADTPRSSGW--PCLHVSLKDLRQGNIYISAE-----RAS 83
           P PT+   S    L +   A  D     GW  P      +D+ +G +   AE     R  
Sbjct: 48  PLPTHLFFS---LLQSRHRAATDYTMMGGWTPPSGAGGAEDVNKGAVQAEAEIMVRSRGR 104

Query: 84  ACVVQLCSNGNPETQ 98
           A  VQLC   +PET+
Sbjct: 105 ARRVQLCPEASPETE 119


>gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens]
          Length = 728

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 132 PPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSIGG 167
           P  ++ PE++ + +     LCR+P CH   LC +GG
Sbjct: 207 PKILMCPEHETERINMYCELCRRPVCH---LCKLGG 239


>gi|169212028 PREDICTED: keratin-associated protein 9-2-like
          2-like [Homo sapiens]
          Length = 160

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 2  CSVSSSCSKYRLPTCTGSTFSRGGC 26
          C VSS C  Y  PTC  +T  R  C
Sbjct: 42 CCVSSCCQPYCHPTCCQNTCCRTTC 66


>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
          Length = 539

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 39  SSGTCLTNYKSATADTPRSSGWPCLHVSLKDLRQGNIYISAERASACVVQLCSNGNPET 97
           S  T  T+  +  A + R S    L   L +   G+  +S    +AC  QL   G+P+T
Sbjct: 399 SDPTLCTSSMAGDASSHRPSCSQDLEAGLSEAVPGSASMSRSATAACRAQLSPAGDPDT 457


>gi|169210099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 413

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 31  PFPTYALHSSGTCLTNYKSATADTPRSSGWPCLHVS 66
           P P   + S GTCL +  +   D  R  G  C H+S
Sbjct: 144 PAPPQRVRSVGTCLPDLFTRPLDRHRHRGSECWHLS 179


>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor
           [Homo sapiens]
          Length = 1233

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 122 GHLPCLPTSLPPGILDPENKGDVVGNRQVLCRK 154
           G  PCLPT  PP    P   G   G R  L R+
Sbjct: 941 GPSPCLPTPDPPPEPSPTGWGPPDGGRAALVRR 973


>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
           sapiens]
          Length = 1189

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 9/42 (21%)

Query: 104 PCLGEPALQVPSVGVNWVGHLPCLPTSLPPGILDPENKGDVV 145
           PC G P L VP          P LP   PP I+ P+N+  V+
Sbjct: 503 PCAGPPGLPVP--------QSPPLPPG-PPEIVGPQNQAGVL 535


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,573,492
Number of Sequences: 37866
Number of extensions: 426474
Number of successful extensions: 854
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 22
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.