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Search of human proteins with 239748097
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748097 PREDICTED: hypothetical protein XP_002346552 [Homo
sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748097 PREDICTED: hypothetical protein XP_002346552 [Homo ... 202 6e-53
gi|239741993 PREDICTED: hypothetical protein XP_002342388 [Homo ... 202 6e-53
gi|194272140 dendrin [Homo sapiens] 30 0.42
gi|217035133 hypothetical protein LOC55765 isoform 2 [Homo sapiens] 29 0.71
gi|217035131 hypothetical protein LOC55765 isoform 1 [Homo sapiens] 29 0.71
gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens] 29 0.71
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 28 1.2
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 28 1.2
gi|153266778 arg tyrosine kinase isoform c [Homo sapiens] 28 1.2
gi|6382062 arg tyrosine kinase isoform b [Homo sapiens] 28 1.2
gi|153266757 arg tyrosine kinase isoform a [Homo sapiens] 28 1.2
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 28 1.2
gi|209862772 arg tyrosine kinase isoform d [Homo sapiens] 28 1.6
gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo sapiens] 28 1.6
gi|56237021 fibrillin 3 precursor [Homo sapiens] 27 2.7
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 27 2.7
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 27 3.5
gi|239756120 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|149944516 tet oncogene family member 3 [Homo sapiens] 27 3.5
gi|149363666 phosphodiesterase 4C isoform PDE4C-2 [Homo sapiens] 27 3.5
gi|149363646 phosphodiesterase 4C isoform PDE4C-3 [Homo sapiens] 27 3.5
gi|115529445 phosphodiesterase 4C isoform PDE4C-1 [Homo sapiens] 27 3.5
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 27 3.5
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 27 4.6
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 27 4.6
gi|239740641 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|145301567 hypothetical protein LOC56006 [Homo sapiens] 27 4.6
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 27 4.6
gi|22550104 ubiquitin specific protease 32 [Homo sapiens] 27 4.6
gi|55741868 zinc finger protein 319 [Homo sapiens] 27 4.6
>gi|239748097 PREDICTED: hypothetical protein XP_002346552 [Homo
sapiens]
Length = 94
Score = 202 bits (513), Expect = 6e-53
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MGEKAVKQSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGP 60
MGEKAVKQSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGP
Sbjct: 1 MGEKAVKQSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGP 60
Query: 61 GSERPRGPLPPPKGHHALPLDEPTGQRLGREVLE 94
GSERPRGPLPPPKGHHALPLDEPTGQRLGREVLE
Sbjct: 61 GSERPRGPLPPPKGHHALPLDEPTGQRLGREVLE 94
>gi|239741993 PREDICTED: hypothetical protein XP_002342388 [Homo
sapiens]
Length = 94
Score = 202 bits (513), Expect = 6e-53
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MGEKAVKQSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGP 60
MGEKAVKQSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGP
Sbjct: 1 MGEKAVKQSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGP 60
Query: 61 GSERPRGPLPPPKGHHALPLDEPTGQRLGREVLE 94
GSERPRGPLPPPKGHHALPLDEPTGQRLGREVLE
Sbjct: 61 GSERPRGPLPPPKGHHALPLDEPTGQRLGREVLE 94
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 30.0 bits (66), Expect = 0.42
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 31 HTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERPRGPLPPPKGHHA-LPLDEPTGQRLG 89
H A R P + Q + W F++ GP RP P PPP+ A L E T R G
Sbjct: 44 HYSRRAPSRQPMDFQASHWARGFQNRTCGP---RPGSPQPPPRRPWASRVLQEATNWRAG 100
>gi|217035133 hypothetical protein LOC55765 isoform 2 [Homo sapiens]
Length = 578
Score = 29.3 bits (64), Expect = 0.71
Identities = 28/92 (30%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 8 QSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCW--------LG 59
++G GR R A RRRP+ + S P A CS S
Sbjct: 325 RAGPEGRGRSAFPRRRPTHYTVTVPDSCFPATKPPLPHAACHSCSEDSGSDVSSISHPTS 384
Query: 60 PGSERP----RGPLPPPKGHHALPLDEPTGQR 87
PGS P PL PPK H P G R
Sbjct: 385 PGSSSPDISFLQPLSPPKTHRHRGAWVPAGSR 416
>gi|217035131 hypothetical protein LOC55765 isoform 1 [Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 0.71
Identities = 28/92 (30%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 8 QSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCW--------LG 59
++G GR R A RRRP+ + S P A CS S
Sbjct: 410 RAGPEGRGRSAFPRRRPTHYTVTVPDSCFPATKPPLPHAACHSCSEDSGSDVSSISHPTS 469
Query: 60 PGSERP----RGPLPPPKGHHALPLDEPTGQR 87
PGS P PL PPK H P G R
Sbjct: 470 PGSSSPDISFLQPLSPPKTHRHRGAWVPAGSR 501
>gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]
Length = 4349
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 57 WLGPGSERPRGPLPPPKGHHALP--LDEPTG 85
W P SE +GPLPP H+ P + EP G
Sbjct: 4191 WEYPHSEVTQGPLPPSAHRHSTPVVMPEPNG 4221
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 58 LGPGSERPRGPLPPPKGHHALPLDEPTG 85
+GPG GP PPP+ H+ +P D G
Sbjct: 85 MGPGGMNQSGPPPPPRSHN-MPSDGMVG 111
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 58 LGPGSERPRGPLPPPKGHHALPLDEPTG 85
+GPG GP PPP+ H+ +P D G
Sbjct: 85 MGPGGMNQSGPPPPPRSHN-MPSDGMVG 111
>gi|153266778 arg tyrosine kinase isoform c [Homo sapiens]
Length = 1167
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 9 SGTRGRSRPAL---RRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERP 65
SG + R A+ R + S+ TVST++ + D L P ERP
Sbjct: 774 SGLPEQDRMAMTLPRNCQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEESAAPSRERP 833
Query: 66 RGPLPPPKGHHALPLDEPTG 85
+ L P +G ALPL P+G
Sbjct: 834 KAKLLP-RGATALPLRTPSG 852
>gi|6382062 arg tyrosine kinase isoform b [Homo sapiens]
Length = 1182
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 9 SGTRGRSRPAL---RRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERP 65
SG + R A+ R + S+ TVST++ + D L P ERP
Sbjct: 789 SGLPEQDRMAMTLPRNCQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEESAAPSRERP 848
Query: 66 RGPLPPPKGHHALPLDEPTG 85
+ L P +G ALPL P+G
Sbjct: 849 KAKLLP-RGATALPLRTPSG 867
>gi|153266757 arg tyrosine kinase isoform a [Homo sapiens]
Length = 1146
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 9 SGTRGRSRPAL---RRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERP 65
SG + R A+ R + S+ TVST++ + D L P ERP
Sbjct: 753 SGLPEQDRMAMTLPRNCQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEESAAPSRERP 812
Query: 66 RGPLPPPKGHHALPLDEPTG 85
+ L P +G ALPL P+G
Sbjct: 813 KAKLLP-RGATALPLRTPSG 831
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 60 PGSERPRGPLPPPKGHHALPLDEPTGQRLG 89
P RP+GP PPP G+ PL P G+ G
Sbjct: 261 PPPGRPQGP-PPPGGNPQQPLPPPAGKPQG 289
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 58 LGPGSERPRGPLPPPKGHHALPLDEPTGQ 86
L P + +P+GP PPP+G P P GQ
Sbjct: 280 LPPPAGKPQGPPPPPQG--GRPHRPPQGQ 306
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 60 PGSERPRGPLPPPKGHHALPLDEPTGQR 87
P P+ PLPPP G P P G R
Sbjct: 271 PPGGNPQQPLPPPAGKPQGPPPPPQGGR 298
>gi|209862772 arg tyrosine kinase isoform d [Homo sapiens]
Length = 1064
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 20 RRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERPRGPLPPPKGHHALP 79
R + S+ TVST++ + D L P ERP+ L P +G ALP
Sbjct: 685 RNCQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEESAAPSRERPKAKLLP-RGATALP 743
Query: 80 LDEPTG 85
L P+G
Sbjct: 744 LRTPSG 749
>gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo
sapiens]
Length = 293
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 8 QSGTRGRSRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERPRG 67
+SG + R +++RP+R G H+ S AA + P E + + C ER G
Sbjct: 4 RSGAQFCRRMGQKKQRPARAGQPHSSSDAA-QAPAEQPHSSSDAAQAPC----PRERCLG 58
Query: 68 PLPPPKGHHALPLDEPTGQ--RLGREVLE 94
P P + ++ P G RLG E +
Sbjct: 59 PPTTPGPYRSIYFSSPKGHLTRLGLEFFD 87
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 24 PSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERPRGPL 69
P R GF+ + T A + +E Q LC SC GS R P+
Sbjct: 231 PCRRGFIPNIHTGACQDVDECQAVPGLCQGGSCVNMVGSFHCRCPV 276
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 59 GPGSERPRGPLPPPKGH 75
GPG P+ P+PPP H
Sbjct: 50 GPGQSGPKPPIPPPPPH 66
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 59 GPGSERPRGPLPPP--KGHHALPLDEPTGQR 87
GPGS PL PP +G +L EP G R
Sbjct: 691 GPGSPEGSAPLEPPSQQGCRSLAWGEPAGSR 721
>gi|239756120 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 7 KQSGTRGR--SRPALRRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSER 64
+ S RGR S PA R G + +S AA E +E P R
Sbjct: 68 RSSARRGRPESEPATNGTRQQ--GDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRAR 125
Query: 65 PRGPLPPPKGHHA 77
RGP P P G A
Sbjct: 126 ARGPQPSPPGSSA 138
>gi|149944516 tet oncogene family member 3 [Homo sapiens]
Length = 1660
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 41 PEEAQEADWL-CSFRSCWLGPGSERPRGPLPPPKGHHALP 79
PE +WL +S + G ERPR P P P G LP
Sbjct: 142 PECPDYLEWLEGKIKSVVMEGGEERPRLPGPLPPGEAGLP 181
>gi|149363666 phosphodiesterase 4C isoform PDE4C-2 [Homo sapiens]
Length = 606
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 66 RGPLPPPKGHHALPLDEPTGQRLGREVLE 94
+GP+ P + LP E TGQ+L E L+
Sbjct: 77 QGPVGNPSSSNQLPPAEDTGQKLALETLD 105
>gi|149363646 phosphodiesterase 4C isoform PDE4C-3 [Homo sapiens]
Length = 680
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 66 RGPLPPPKGHHALPLDEPTGQRLGREVLE 94
+GP+ P + LP E TGQ+L E L+
Sbjct: 151 QGPVGNPSSSNQLPPAEDTGQKLALETLD 179
>gi|115529445 phosphodiesterase 4C isoform PDE4C-1 [Homo sapiens]
Length = 712
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 66 RGPLPPPKGHHALPLDEPTGQRLGREVLE 94
+GP+ P + LP E TGQ+L E L+
Sbjct: 183 QGPVGNPSSSNQLPPAEDTGQKLALETLD 211
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 58 LGPGSERPRGPLPPPKGHHALPLDEPT 84
+G RPRGP PPP G +D+P+
Sbjct: 239 MGAPVPRPRGP-PPPPGDENREMDDPS 264
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 59 GPGSERPRGPLPPPKGHHALPLDEPTGQRLGREVL 93
GP + P P+PPP + P ++P + R VL
Sbjct: 578 GPPAPAPPAPIPPPAPSQSSPPEQPQSMEM-RSVL 611
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 59 GPGSERPRGPLPPPKGHHALPLDEPTGQRLGREVL 93
GP + P P+PPP + P ++P + R VL
Sbjct: 578 GPPAPAPPAPIPPPAPSQSSPPEQPQSMEM-RSVL 611
>gi|239740641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 26.6 bits (57), Expect = 4.6
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 12 RGRSRPALRRRRPSRFGFVHTVSTAAH--RTPEEAQEADWLCSFRSCWLGPGSERPR--- 66
RG RP+ + +TAAH + P A L S S WL P R
Sbjct: 14 RGLGRPSCCTWQVYLCSSPEGTTTAAHFWKVPSPAG----LVSTSSQWLRPARPSSRRGS 69
Query: 67 -GPLPPPKGHHALP 79
GP PPP G A P
Sbjct: 70 PGPAPPPGGPLASP 83
>gi|145301567 hypothetical protein LOC56006 [Homo sapiens]
Length = 520
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 61 GSERPRGPLPPPKGHHALPLDEPTGQR 87
G+ P G PPP A P E GQR
Sbjct: 115 GASTPEGTAPPPPAAPAPPKGEKEGQR 141
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 59 GPGSERPRGPLPPPKGHHALP 79
G GS P P PPP G A P
Sbjct: 105 GAGSSPPAAPCPPPPGPAAAP 125
>gi|22550104 ubiquitin specific protease 32 [Homo sapiens]
Length = 1604
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 20 RRRRPSRFGFVHTVSTAAHRTPEEAQEADWLCSFRSCWLGPGSERPRGPLPPPK-GHHAL 78
++ RPS FG V H ++ +A W+ R PLPP + +HA
Sbjct: 1094 QKNRPSLFGMPLIVPCTVHTRKKDLYDAVWI----------QVSRLASPLPPQEASNHAQ 1143
Query: 79 PLDEPTG 85
D+ G
Sbjct: 1144 DCDDSMG 1150
>gi|55741868 zinc finger protein 319 [Homo sapiens]
Length = 582
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 57 WLGPGSERPRGPLPPPKGHHALP 79
W P +P+ P PP HHA P
Sbjct: 5 WQQPPQTQPQQPQPPQPQHHAEP 27
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,141,584
Number of Sequences: 37866
Number of extensions: 282223
Number of successful extensions: 1454
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 55
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.