Guide to the Human Genome
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Name: PDE4C Sequence: fasta or formatted (606aa) NCBI GI: 149363666
Description:

phosphodiesterase 4C isoform PDE4C-2

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [712aa] phosphodiesterase 4C isoform PDE4C-1
alt prot [680aa] phosphodiesterase 4C isoform PDE4C-3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         52           2
 C cysteine            1.0          6           1
 D aspartate           7.3         44           1
 E glutamate           8.9         54           6
 F phenylalanine       3.1         19           2
 G glycine             3.8         23           1
 H histidine           3.3         20           2
 I isoleucine          3.1         19           2
 K lysine              3.5         21           2
 L leucine            13.2         80           3
 M methionine          2.3         14           1
 N asparagine          4.1         25           1
 P proline             5.1         31           2
 Q glutamine           5.6         34           2
 R arginine            4.8         29           2
 S serine              8.1         49           3
 T threonine           5.9         36           1
 V valine              5.4         33           1
 W tryptophan          1.0          6           1
 Y tyrosine            1.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 1.000   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 1.000   phosphodiesterase 4C isoform PDE4C-1 
PDE4D                 0.732   phosphodiesterase 4D isoform 1 
PDE4D                 0.732   phosphodiesterase 4D isoform 2 
PDE4A                 0.686   phosphodiesterase 4A isoform 3 
PDE4A                 0.686   phosphodiesterase 4A isoform 2 
PDE4A                 0.686   phosphodiesterase 4A isoform 1 
PDE4B                 0.680   phosphodiesterase 4B isoform 1 
PDE4B                 0.680   phosphodiesterase 4B isoform 3 
PDE4B                 0.680   phosphodiesterase 4B isoform 1 
PDE4B                 0.603   phosphodiesterase 4B isoform 2 
PDE4A                 0.563   phosphodiesterase 4A isoform 4 
PDE1B                 0.181   phosphodiesterase 1B 
PDE1A                 0.177   phosphodiesterase 1A isoform 2 
PDE1A                 0.177   phosphodiesterase 1A isoform 1 
PDE1C                 0.173   phosphodiesterase 1C 
PDE8A                 0.169   phosphodiesterase 8A isoform 2 
PDE8A                 0.169   phosphodiesterase 8A isoform 1 
PDE7B                 0.160   phosphodiesterase 7B 
PDE8B                 0.156   phosphodiesterase 8B isoform 2 
PDE8B                 0.156   phosphodiesterase 8B isoform 4 
PDE8B                 0.156   phosphodiesterase 8B isoform 5 
PDE8B                 0.156   phosphodiesterase 8B isoform 3 
PDE8B                 0.156   phosphodiesterase 8B isoform 1 
PDE7A                 0.155   phosphodiesterase 7A isoform a 
PDE7A                 0.143   phosphodiesterase 7A isoform b 
PDE9A                 0.124   phosphodiesterase 9A isoform g 
PDE9A                 0.124   phosphodiesterase 9A isoform g 
PDE9A                 0.124   phosphodiesterase 9A isoform o 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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