Guide to the Human Genome
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Name: PDE4C Sequence: fasta or formatted (680aa) NCBI GI: 149363646
Description:

phosphodiesterase 4C isoform PDE4C-3

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [712aa] phosphodiesterase 4C isoform PDE4C-1
alt prot [606aa] phosphodiesterase 4C isoform PDE4C-2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         56           2
 C cysteine            1.2          8           1
 D aspartate           6.8         46           1
 E glutamate           8.1         55           6
 F phenylalanine       3.2         22           2
 G glycine             4.9         33           1
 H histidine           3.1         21           2
 I isoleucine          3.1         21           2
 K lysine              3.2         22           2
 L leucine            13.1         89           3
 M methionine          2.2         15           1
 N asparagine          4.0         27           1
 P proline             6.3         43           2
 Q glutamine           5.6         38           2
 R arginine            5.6         38           2
 S serine              8.2         56           3
 T threonine           5.4         37           1
 V valine              5.3         36           1
 W tryptophan          0.9          6           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.923   phosphodiesterase 4C isoform PDE4C-1 
PDE4C                 0.885   phosphodiesterase 4C isoform PDE4C-2 
PDE4D                 0.674   phosphodiesterase 4D isoform 2 
PDE4D                 0.672   phosphodiesterase 4D isoform 1 
PDE4B                 0.657   phosphodiesterase 4B isoform 3 
PDE4B                 0.624   phosphodiesterase 4B isoform 1 
PDE4B                 0.624   phosphodiesterase 4B isoform 1 
PDE4A                 0.623   phosphodiesterase 4A isoform 2 
PDE4A                 0.622   phosphodiesterase 4A isoform 3 
PDE4A                 0.620   phosphodiesterase 4A isoform 1 
PDE4B                 0.533   phosphodiesterase 4B isoform 2 
PDE4A                 0.498   phosphodiesterase 4A isoform 4 
PDE1B                 0.160   phosphodiesterase 1B 
PDE1A                 0.157   phosphodiesterase 1A isoform 2 
PDE1A                 0.157   phosphodiesterase 1A isoform 1 
PDE1C                 0.153   phosphodiesterase 1C 
PDE8A                 0.150   phosphodiesterase 8A isoform 2 
PDE8A                 0.150   phosphodiesterase 8A isoform 1 
PDE7B                 0.141   phosphodiesterase 7B 
PDE8B                 0.138   phosphodiesterase 8B isoform 2 
PDE8B                 0.138   phosphodiesterase 8B isoform 4 
PDE8B                 0.138   phosphodiesterase 8B isoform 5 
PDE8B                 0.138   phosphodiesterase 8B isoform 3 
PDE8B                 0.138   phosphodiesterase 8B isoform 1 
PDE7A                 0.137   phosphodiesterase 7A isoform a 
PDE7A                 0.127   phosphodiesterase 7A isoform b 
PDE9A                 0.110   phosphodiesterase 9A isoform g 
PDE9A                 0.110   phosphodiesterase 9A isoform g 
PDE9A                 0.110   phosphodiesterase 9A isoform o 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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