Guide to the Human Genome
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Name: LOC100291039 Sequence: fasta or formatted (94aa) NCBI GI: 239748097
Description:

PREDICTED: hypothetical protein XP_002346552

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4          7           2
 C cysteine            2.1          2           1
 D aspartate           2.1          2           1
 E glutamate           8.5          8           2
 F phenylalanine       3.2          3           1
 G glycine            10.6         10           1
 H histidine           4.3          4           2
 I isoleucine          0.0          0           0
 K lysine              3.2          3           1
 L leucine             8.5          8           1
 M methionine          1.1          1           1
 N asparagine          0.0          0           0
 P proline            11.7         11           3
 Q glutamine           3.2          3           1
 R arginine           14.9         14           4
 S serine              7.4          7           1
 T threonine           5.3          5           1
 V valine              4.3          4           1
 W tryptophan          2.1          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346552 
LOC100288588          1.000   PREDICTED: hypothetical protein XP_002342388 
DDN                   0.028   dendrin 
C1orf106              0.023   hypothetical protein LOC55765 isoform 2 
C1orf106              0.023   hypothetical protein LOC55765 isoform 1 
FAT2                  0.023   FAT tumor suppressor 2 precursor 
SS18                  0.017   synovial sarcoma translocation, chromosome 18 isofor...
SS18                  0.017   synovial sarcoma translocation, chromosome 18 isofor...
ABL2                  0.017   arg tyrosine kinase isoform c 
ABL2                  0.017   arg tyrosine kinase isoform b 
ABL2                  0.017   arg tyrosine kinase isoform a 
PRB3                  0.017   proline-rich protein BstNI subfamily 3 precursor [H...
ABL2                  0.017   arg tyrosine kinase isoform d 
MPG                   0.017   N-methylpurine-DNA glycosylase isoform b 
FBN3                  0.011   fibrillin 3 precursor 
SFPQ                  0.011   splicing factor proline/glutamine rich (polypyrimidin...
VWA5B2                0.011   von Willebrand factor A domain containing 5B2 [Homo...
LOC100292508          0.011   PREDICTED: hypothetical protein 
TET3                  0.011   tet oncogene family member 3 
PDE4C                 0.011   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.011   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.011   phosphodiesterase 4C isoform PDE4C-1 
SF3B2                 0.011   splicing factor 3B subunit 2 
PPP1R13L              0.011   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.011   protein phosphatase 1, regulatory subunit 13 like [H...
LOC100294103          0.011   PREDICTED: hypothetical protein 
C19orf61              0.011   hypothetical protein LOC56006 
ZBED3                 0.011   zinc finger, BED-type containing 3 
USP32                 0.011   ubiquitin specific protease 32 
ZNF319                0.011   zinc finger protein 319 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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