Search of human proteins with 239748022

Search of human proteins with 239748022

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo
sapiens]
         (287 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo ...   610   e-175
gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo ...   593   e-170
gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo ...   593   e-170
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    37   0.020
gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]           37   0.020
gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens]            37   0.020
gi|118402590 myosin XV [Homo sapiens]                                  37   0.026
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]            37   0.026
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    36   0.034
gi|195947369 junction-mediating and regulatory protein [Homo sap...    36   0.045
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ...    35   0.076
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ...    35   0.076
gi|237757326 synaptojanin 1 isoform d [Homo sapiens]                   35   0.076
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9...    35   0.099
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9...    35   0.099
gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]            34   0.13 
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         33   0.22 
gi|134244285 Notch homolog 3 [Homo sapiens]                            33   0.29 
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]      33   0.29 
gi|4758696 mitogen-activated protein kinase kinase kinase 13 [Ho...    33   0.29 
gi|157427665 hypothetical protein LOC205147 [Homo sapiens]             33   0.29 
gi|157427663 hypothetical protein LOC205147 [Homo sapiens]             33   0.29 
gi|157427661 hypothetical protein LOC205147 [Homo sapiens]             33   0.29 
gi|157427667 hypothetical protein LOC205147 [Homo sapiens]             33   0.29 
gi|58218966 hypothetical protein LOC339201 [Homo sapiens]              33   0.29 
gi|169790811 SHC (Src homology 2 domain containing) transforming...    33   0.38 
gi|7706607 LEM domain containing 3 [Homo sapiens]                      32   0.49 
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]            32   0.64 
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           32   0.64 
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           32   0.64 

>gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo
           sapiens]
          Length = 287

 Score =  610 bits (1572), Expect = e-175
 Identities = 287/287 (100%), Positives = 287/287 (100%)

Query: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
           MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60

Query: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
           ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120

Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
           WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180

Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
           GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240

Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPEDGKERALRAPVRGPWLRPF 287
           IRPGPEPGCQASRVIKGGLGPFIEVEPEDGKERALRAPVRGPWLRPF
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPEDGKERALRAPVRGPWLRPF 287


>gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo
           sapiens]
          Length = 319

 Score =  593 bits (1529), Expect = e-170
 Identities = 287/319 (89%), Positives = 287/319 (89%), Gaps = 32/319 (10%)

Query: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
           MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60

Query: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
           ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120

Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
           WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180

Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
           GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240

Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVE--------------------------------PE 268
           IRPGPEPGCQASRVIKGGLGPFIEVE                                PE
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300

Query: 269 DGKERALRAPVRGPWLRPF 287
           DGKERALRAPVRGPWLRPF
Sbjct: 301 DGKERALRAPVRGPWLRPF 319


>gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo
           sapiens]
          Length = 319

 Score =  593 bits (1529), Expect = e-170
 Identities = 287/319 (89%), Positives = 287/319 (89%), Gaps = 32/319 (10%)

Query: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
           MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60

Query: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
           ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120

Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
           WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180

Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
           GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240

Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVE--------------------------------PE 268
           IRPGPEPGCQASRVIKGGLGPFIEVE                                PE
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300

Query: 269 DGKERALRAPVRGPWLRPF 287
           DGKERALRAPVRGPWLRPF
Sbjct: 301 DGKERALRAPVRGPWLRPF 319


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 74  AGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSL 133
           A  P P  PS            + P    P P APA LA P    AG     PA+  P+ 
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPP----PPPPAPATLARPPGHPAGPPTAAPAVPPPA- 301

Query: 134 CAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRP 193
                   +A++GG +G+      A  P    PAG S Q   G  +  P  G +   P+ 
Sbjct: 302 --------AAQNGGSAGAAP----APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKR 349

Query: 194 RAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
                  A+      G     A++ +G  +      P  + P  PG+
Sbjct: 350 VVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGT 396



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 52/194 (26%), Positives = 68/194 (35%), Gaps = 33/194 (17%)

Query: 108 PACLALPGLLGAGWGACRPALYGPSLC------APPSLRGSAEDGGRSGSCTRLPRA--- 158
           PA  A PG    G G  RP    P         APP+ +      G +GSC  +P A   
Sbjct: 91  PAGRARPG----GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV 146

Query: 159 ------QPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212
                  P    +PAG +   A+ G   GPG G    GP P     A   A + + G   
Sbjct: 147 AAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP---GPGPGPGKPAGPGAAQTLNG--- 200

Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPGCQASRV----IKGGLGPFIEVEPE 268
             AAL   L     A   ++L    P ++ P P+P    + +      G   P     P 
Sbjct: 201 -SAAL---LNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS 256

Query: 269 DGKERALRAPVRGP 282
                A  AP   P
Sbjct: 257 PPAAPAPAAPAAAP 270


>gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]
          Length = 748

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 80  RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139
           RR S  +L  A++Q  ++PLR   +    A  A    L     A   A  GP L     L
Sbjct: 635 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 692

Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195
           +     GG S +  R+ R QP L+  P  S  +          G   R H P PRA
Sbjct: 693 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 738


>gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens]
          Length = 749

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 80  RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139
           RR S  +L  A++Q  ++PLR   +    A  A    L     A   A  GP L     L
Sbjct: 636 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 693

Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195
           +     GG S +  R+ R QP L+  P  S  +          G   R H P PRA
Sbjct: 694 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 739


>gi|118402590 myosin XV [Homo sapiens]
          Length = 3530

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 37/135 (27%), Positives = 43/135 (31%), Gaps = 25/135 (18%)

Query: 59  PSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLG 118
           PS+         P L+G PRP  P  +             LR  P P A      P    
Sbjct: 670 PSSGPPPAPPLSPALSGLPRPASPYGS-------------LRRHPPPWAAPAHVPPAPQA 716

Query: 119 AGWGACRPALYGPS-----LCAP---PSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSS 170
           + W    P    P      L  P   PS RGS   G   G     PRA     W P  S 
Sbjct: 717 SWWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSRRRGAAFGFPGASPRASRRRAWSPLASP 776

Query: 171 EQEAQGGWSVGPGLG 185
           +   +      PGLG
Sbjct: 777 QPSLRS----SPGLG 787


>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 316

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 62/229 (27%), Positives = 78/229 (34%), Gaps = 30/229 (13%)

Query: 10  PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
           PGA+   A G G   G G        R    G+  R    R C   P  C  S+      
Sbjct: 84  PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139

Query: 68  HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
           H  P L G     R S   L+          +  RP PA PA L +     AG  A R  
Sbjct: 140 HRWPQLRGREADPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190

Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
              P LC+     G+A  G R    TR     PP    P   S    +GG  V    G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239

Query: 188 HHGPRPRA----IWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLN 232
             G R  A     W     + + +GG+        L  EV+   ++  N
Sbjct: 240 GAGGRGGAQRIPPWPLRRLSLQYLGGVSEYSNKQELEQEVIVGKMLRNN 288


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 36.2 bits (82), Expect = 0.034
 Identities = 57/216 (26%), Positives = 71/216 (32%), Gaps = 40/216 (18%)

Query: 39  GAPWRR---PCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPR---PRRPSRTFLLTALK 92
           G P RR   PCP   R+    C P   +  GD    W  G P    P  P     L A +
Sbjct: 688 GGPSRRGPLPCPLCSREGACSCLP---LERGDAVAGW-GGHPALGCPHPPEDDSSLRAER 743

Query: 93  QRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSC 152
              ++      +P AP   A P  L    GA  P    P    PP+              
Sbjct: 744 GSLAD------LPMAPPASAPPEFLDPLMGAAAPQY--PGRGPPPA-------------- 781

Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212
              P   PP    PA  +           PG G    GP+P      + + F   G    
Sbjct: 782 ---PPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPG 838

Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPG 248
             AA   G+        P    P DPG+ RP P+PG
Sbjct: 839 GGAAEEEGVP---RPRAPPE--PPDPGAPRPPPDPG 869


>gi|195947369 junction-mediating and regulatory protein [Homo
           sapiens]
          Length = 988

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 41/118 (34%), Positives = 48/118 (40%), Gaps = 19/118 (16%)

Query: 11  GASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS-ASVRVGDHF 69
           GA+S  + G GS AGRG    TAS   V    R P PR  R   W    S  S R     
Sbjct: 72  GAASDGSRGPGSPAGRGRPEATASATLV----RSPGPR--RSSAWAEGGSPRSTRS---- 121

Query: 70  LPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
              L G+PR R P         + R   P+R +P+P      A     GA   A RPA
Sbjct: 122 ---LLGDPRLRSPGS----KGAESRLRSPVRAKPIPGQKTSEA-DDAAGAAAAAARPA 171


>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
           sapiens]
          Length = 304

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%)

Query: 10  PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
           PGA+   A G G   G G        R    G+  R    R C   P  C  S+      
Sbjct: 84  PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139

Query: 68  HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
           H  P L G     R S   L+          +  RP PA PA L +     AG  A R  
Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190

Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
              P LC+     G+A  G R    TR     PP    P   S    +GG  V    G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239

Query: 188 HHGPR 192
             G R
Sbjct: 240 GAGGR 244


>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
           sapiens]
          Length = 304

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%)

Query: 10  PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
           PGA+   A G G   G G        R    G+  R    R C   P  C  S+      
Sbjct: 84  PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139

Query: 68  HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
           H  P L G     R S   L+          +  RP PA PA L +     AG  A R  
Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190

Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
              P LC+     G+A  G R    TR     PP    P   S    +GG  V    G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239

Query: 188 HHGPR 192
             G R
Sbjct: 240 GAGGR 244


>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
          Length = 1526

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 37/126 (29%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 3    SQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPSAS 62
            S   RT P  S T + G          V +  +R   AP R P P + +  P    P+  
Sbjct: 1038 SSSPRTSPCQSPTISEG---------PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATP 1088

Query: 63   VRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWG 122
            +   D   P     P P RP       A  QR   P   R  P+  A LA PG   AG+ 
Sbjct: 1089 LPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPP-SGRSQPSPQAGLAGPG--PAGYS 1145

Query: 123  ACRPAL 128
              RP +
Sbjct: 1146 TARPTI 1151


>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 34.7 bits (78), Expect = 0.099
 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 99  LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152
           LR  P P  P   L   G    G     GA  P   GPSL  P + R S     R  SC 
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180

Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194
              P A+P    +  G + Q + G W   PG       P PR
Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221


>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 34.7 bits (78), Expect = 0.099
 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 99  LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152
           LR  P P  P   L   G    G     GA  P   GPSL  P + R S     R  SC 
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180

Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194
              P A+P    +  G + Q + G W   PG       P PR
Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221


>gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 213

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 42  WRRPCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRE 101
           +R P   TC   PW   P  S++V D   PWL    +PR   R      L+ + S  +  
Sbjct: 65  FRPPQLLTCLGGPWCLCPLCSLQVED---PWLFSLLQPRDQLR------LENQESCCVCG 115

Query: 102 RPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPP 161
           R   +AP  +A      A  G C   L   +  +PP  R +A +GG +      P AQ P
Sbjct: 116 REDNSAPDTVA------ATSGVC-GELRDSAKRSPP--RAAAGEGGWARP-PPTPGAQGP 165

Query: 162 LR------WQPAGSSEQEAQGG 177
            +      W+P G  +  A+GG
Sbjct: 166 AKPPRFPAWRPGGRGDPNAEGG 187


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 25/59 (42%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 137  PSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGS---SEQEAQGGWSVGPGLGERHHGPR 192
            P  R  A  GG  G   R  R QPP    P GS   SE EA G    G G   R  GPR
Sbjct: 3137 PRKRAGAPVGGSPGLAKR-GRLQPPSPLGPEGSVEESEAEASGEEEEGDGTPRRRPGPR 3194


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 92  KQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGS 151
           ++R   P+   P P  P   ALP LL          L GP   APP L GS    G  G 
Sbjct: 8   RRRRRRPMS--PPPPPPPVRALPLLL---------LLAGPGAAAPPCLDGSPCANG--GR 54

Query: 152 CTRLPRAQPPLRWQPAGSSEQ 172
           CT+LP  +      P    E+
Sbjct: 55  CTQLPSREAACLCPPGWVGER 75


>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
          Length = 1159

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 98  PLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSG---SCTR 154
           P    P P AP     P          RP L    L       G + + GR G     TR
Sbjct: 15  PTARAPSPGAPPPPRSP--------RSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTR 66

Query: 155 LPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRP 193
           +PR+ P  R +P G  +++A+G     PG      GP P
Sbjct: 67  VPRSPPAGRAEPGGGEDRQARG---TEPGAPGPSPGPAP 102


>gi|4758696 mitogen-activated protein kinase kinase kinase 13 [Homo
           sapiens]
          Length = 966

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 121 WGACRPALYGPSLCAPPSLRG-----SAEDGGRSGSCTRLPRAQPPL-RWQPAGSSEQEA 174
           WG C+   Y P L   P   G     SAE  GRS   ++ P   P L   Q +  +E+  
Sbjct: 721 WGCCQADAYDPCLQCRPEQYGSLDIPSAEPVGRSPDLSKSPAHNPLLENAQSSEKTEENE 780

Query: 175 QGGWSVGPGLGERHHGPRP 193
             G      LG  H G  P
Sbjct: 781 FSGCRSESSLGTSHLGTPP 799


>gi|157427665 hypothetical protein LOC205147 [Homo sapiens]
          Length = 861

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 103 PVPAAPACLAL----PGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRA 158
           PVP+   C       PG+LG   G  RP   G +L A P L G      R  +       
Sbjct: 633 PVPSTWPCSQKEPGPPGVLGCFRGPWRPGHGGDTLDAEPMLAGCV---ARVAALKISSNE 689

Query: 159 QPPLRWQPAGSSEQEAQG-GWSVGPGLGER 187
           QPP  W P         G  W+ GP + E+
Sbjct: 690 QPPAAWPPRQDMGSGLFGQRWARGPDMLEQ 719


>gi|157427663 hypothetical protein LOC205147 [Homo sapiens]
          Length = 861

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 103 PVPAAPACLAL----PGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRA 158
           PVP+   C       PG+LG   G  RP   G +L A P L G      R  +       
Sbjct: 633 PVPSTWPCSQKEPGPPGVLGCFRGPWRPGHGGDTLDAEPMLAGCV---ARVAALKISSNE 689

Query: 159 QPPLRWQPAGSSEQEAQG-GWSVGPGLGER 187
           QPP  W P         G  W+ GP + E+
Sbjct: 690 QPPAAWPPRQDMGSGLFGQRWARGPDMLEQ 719


>gi|157427661 hypothetical protein LOC205147 [Homo sapiens]
          Length = 861

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 103 PVPAAPACLAL----PGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRA 158
           PVP+   C       PG+LG   G  RP   G +L A P L G      R  +       
Sbjct: 633 PVPSTWPCSQKEPGPPGVLGCFRGPWRPGHGGDTLDAEPMLAGCV---ARVAALKISSNE 689

Query: 159 QPPLRWQPAGSSEQEAQG-GWSVGPGLGER 187
           QPP  W P         G  W+ GP + E+
Sbjct: 690 QPPAAWPPRQDMGSGLFGQRWARGPDMLEQ 719


>gi|157427667 hypothetical protein LOC205147 [Homo sapiens]
          Length = 861

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 103 PVPAAPACLAL----PGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRA 158
           PVP+   C       PG+LG   G  RP   G +L A P L G      R  +       
Sbjct: 633 PVPSTWPCSQKEPGPPGVLGCFRGPWRPGHGGDTLDAEPMLAGCV---ARVAALKISSNE 689

Query: 159 QPPLRWQPAGSSEQEAQG-GWSVGPGLGER 187
           QPP  W P         G  W+ GP + E+
Sbjct: 690 QPPAAWPPRQDMGSGLFGQRWARGPDMLEQ 719


>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
          Length = 193

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 32/118 (27%)

Query: 96  SEPLRERPVPAAPACLALPGLLGAGWGAC-RPALYGPSLCAPP---SLRG-----SAEDG 146
           S P      P +PA +   GL    WG+  RPA + P  C PP     RG     +A  G
Sbjct: 6   SAPQGALAAPRSPA-VRRKGLQAPSWGSPGRPAAHSPWACGPPHWGPQRGPRNAAAARPG 64

Query: 147 GRS----------GSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194
            RS          G+C R P  Q     QP G+   +        PG+   + GPRP+
Sbjct: 65  PRSRWHKRCAAACGACARPPGHQ----LQPPGAGAPQ--------PGVACSYLGPRPQ 110


>gi|169790811 SHC (Src homology 2 domain containing) transforming
           protein 2 [Homo sapiens]
          Length = 582

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 14/93 (15%)

Query: 102 RPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL---RGSAEDGGRSG-SCTRLPR 157
           +P PA P    +P L  A  GAC P    P  C  P+L   RG+   G R G        
Sbjct: 63  QPEPAGPG--GVPALAAAVLGACEPRCAAP--CPLPALSRCRGAGSRGSRGGRGAAGSGD 118

Query: 158 AQPPLRWQPAGSSEQEAQGGW------SVGPGL 184
           A     W   GS   +   GW       +GPG+
Sbjct: 119 AAAAAEWIRKGSFIHKPAHGWLHPDARVLGPGV 151


>gi|7706607 LEM domain containing 3 [Homo sapiens]
          Length = 911

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 23/170 (13%)

Query: 12  ASSTCAWGLGSCAGRGLGVRTAS-----VRTVGAPWRRPC--PRTCRQDPWRCHPSASVR 64
           A++  A G  + A  G+GVR  S     +RT G   R     P +    P     SA+  
Sbjct: 73  AATVAAAGPAAAAAAGMGVRPVSGDLSYLRTPGGLCRISASGPESLLGGPGGA--SAAPA 130

Query: 65  VGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG---- 120
            G   L   + +      S         ++    L+ R + A PA LA   +  +     
Sbjct: 131 AGSKVLLGFSSDESDVEASPRDQAGGGGRKDRASLQYRGLKAPPAPLAASEVTNSNSAER 190

Query: 121 ------WGACRPALYGPSLCAPPSLRGSAED--GGRSGSCTRLPRAQPPL 162
                 WGA RPA  GP L  PP   G+ ED  G       R P  + PL
Sbjct: 191 RKPHSWWGARRPA--GPELQTPPGKDGAVEDEEGEGEDGEERDPETEEPL 238


>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 292

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 48/162 (29%), Positives = 55/162 (33%), Gaps = 26/162 (16%)

Query: 27  GLGVRTASVRTVGAPWRRPCPRTCRQD--PWRCHPSASVRVGDHFLPWLAGEPRPRRP-- 82
           GLG R ++    GA  RRP  R       P     + S R  DH  P   G P   RP  
Sbjct: 2   GLGPRPSAGAGAGAG-RRPAARQVAPPGGPXSLARTHSRRHPDHAPP--PGRPSCSRPLC 58

Query: 83  -SRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSL-------- 133
              + L T    R   P    P P  P   A PG+L  G G        P L        
Sbjct: 59  AGSSCLATPEPAR--APSIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPPLSPTRGDCR 116

Query: 134 ----CAPPSLR----GSAEDGGRSGSCTRLPRAQPPLRWQPA 167
                AP SLR      A  GG        P+A   +  QPA
Sbjct: 117 VPVPAAPISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPA 158


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 125 RPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGL 184
           RP +Y  +   PP   GS   GGR       P++QPPL  + A  + Q         P  
Sbjct: 172 RPPVYLGNKPTPPRQEGSF--GGR-------PKSQPPLPQETAAPAPQPGPTAPPARPPA 222

Query: 185 GERHHGPRPRA 195
            E   GPR RA
Sbjct: 223 YESREGPRGRA 233


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 125 RPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGL 184
           RP +Y  +   PP   GS   GGR       P++QPPL  + A  + Q         P  
Sbjct: 172 RPPVYLGNKPTPPRQEGSF--GGR-------PKSQPPLPQETAAPAPQPGPTAPPARPPA 222

Query: 185 GERHHGPRPRA 195
            E   GPR RA
Sbjct: 223 YESREGPRGRA 233


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.139    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,136,997
Number of Sequences: 37866
Number of extensions: 938845
Number of successful extensions: 3938
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 3810
Number of HSP's gapped (non-prelim): 334
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.