Guide to the Human Genome
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Name: FAM123C Sequence: fasta or formatted (861aa) NCBI GI: 157427667
Description:

hypothetical protein LOC205147

Not currently referenced in the text

Other entries for this name:
alt mRNA {861aa} hypothetical protein LOC205147
alt mRNA {861aa} hypothetical protein LOC205147
alt mRNA {861aa} hypothetical protein LOC205147
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         84           3
 C cysteine            2.6         22           1
 D aspartate           5.2         45           3
 E glutamate           6.6         57           3
 F phenylalanine       2.4         21           1
 G glycine            10.8         93           2
 H histidine           1.6         14           2
 I isoleucine          1.3         11           1
 K lysine              3.8         33           2
 L leucine             9.3         80           2
 M methionine          1.3         11           1
 N asparagine          1.2         10           1
 P proline            10.3         89           2
 Q glutamine           5.2         45           3
 R arginine            6.0         52           2
 S serine             11.6        100           4
 T threonine           4.9         42           2
 V valine              3.7         32           1
 W tryptophan          1.5         13           1
 Y tyrosine            0.8          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC205147 
FAM123C               1.000   hypothetical protein LOC205147 
FAM123C               1.000   hypothetical protein LOC205147 
FAM123C               1.000   hypothetical protein LOC205147 
FAM123A               0.050   hypothetical protein LOC219287 isoform 1 
FAM123A               0.034   hypothetical protein LOC219287 isoform 2 
FAM123B               0.031   family with sequence similarity 123B 
COL3A1                0.011   collagen type III alpha 1 preproprotein 
BSN                   0.011   bassoon protein 
COL7A1                0.010   alpha 1 type VII collagen precursor 
COL1A1                0.009   alpha 1 type I collagen preproprotein 
COL15A1               0.009   alpha 1 type XV collagen precursor 
COL16A1               0.009   alpha 1 type XVI collagen precursor 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728307             0.009   PREDICTED: hypothetical protein 
PLEKHG5               0.009   pleckstrin homology domain containing family G membe...
PLEKHG5               0.009   pleckstrin homology domain containing family G memb...
PLEKHG5               0.009   pleckstrin homology domain containing family G memb...
PLEKHG5               0.009   pleckstrin homology domain containing family G memb...
PLEKHG5               0.009   pleckstrin homology domain containing family G memb...
MAPK8IP2              0.009   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.009   mitogen-activated protein kinase 8 interacting protei...
LOC100293055          0.008   PREDICTED: similar to COL22A1 protein 
TCOF1                 0.008   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.008   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.008   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.008   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.008   Treacher Collins-Franceschetti syndrome 1 isoform a ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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