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Search of human proteins with 239747883
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] 505 e-143
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ... 402 e-112
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ... 354 4e-98
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 76 3e-14
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 76 3e-14
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 76 3e-14
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ... 72 4e-13
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ... 72 4e-13
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ... 72 4e-13
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 71 7e-13
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ... 70 2e-12
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ... 70 2e-12
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ... 70 2e-12
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ... 70 2e-12
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ... 70 2e-12
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ... 70 2e-12
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ... 69 4e-12
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ... 69 4e-12
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ... 69 4e-12
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 68 8e-12
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 68 8e-12
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 68 8e-12
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 67 1e-11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 67 1e-11
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 66 3e-11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 65 7e-11
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 65 7e-11
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 65 7e-11
gi|50511941 EMI domain containing 1 [Homo sapiens] 65 7e-11
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ... 64 1e-10
>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 505 bits (1301), Expect = e-143
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MAKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60
MAKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK
Sbjct: 1 MAKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL
Sbjct: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180
SHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLG
Sbjct: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180
Query: 181 PPGEMVTGKGVNGQVFQLRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQ 240
PPGEMVTGKGVNGQVFQLRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQ
Sbjct: 181 PPGEMVTGKGVNGQVFQLRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQ 240
Query: 241 EIETV 245
EIETV
Sbjct: 241 EIETV 245
>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
sapiens]
Length = 433
Score = 402 bits (1033), Expect = e-112
Identities = 201/221 (90%), Positives = 201/221 (90%), Gaps = 18/221 (8%)
Query: 43 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 102
GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL
Sbjct: 213 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 272
Query: 103 SPLGPDLIPRPPRLPLPLSHSW------------------DSWDFLAFLESVGRTEPGEA 144
SPLGPDLIPRPPRLPLPLSHSW DSWDFLAFLESVGRTEP EA
Sbjct: 273 SPLGPDLIPRPPRLPLPLSHSWASWVFLVCLATPDARNSGDSWDFLAFLESVGRTEPEEA 332
Query: 145 GDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 204
GDREKGPQGQPGPRGATGKSGAKGPQSAPG IGNLGPPGEMVTGKGVNGQVFQLRDEITF
Sbjct: 333 GDREKGPQGQPGPRGATGKSGAKGPQSAPGRIGNLGPPGEMVTGKGVNGQVFQLRDEITF 392
Query: 205 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV
Sbjct: 393 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433
>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
sapiens]
Length = 415
Score = 354 bits (908), Expect = 4e-98
Identities = 183/221 (82%), Positives = 183/221 (82%), Gaps = 36/221 (16%)
Query: 43 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 102
GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL
Sbjct: 213 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 272
Query: 103 SPLGPDLIPRPPRLPLPLSHSW------------------DSWDFLAFLESVGRTEPGEA 144
SPLGPDLIPRPPRLPLPLSHSW DSWDFLAFLESVGRTEP EA
Sbjct: 273 SPLGPDLIPRPPRLPLPLSHSWASWVFLVCLATPDARNSGDSWDFLAFLESVGRTEPEEA 332
Query: 145 GDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 204
GDREKG PQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF
Sbjct: 333 GDREKG------------------PQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 374
Query: 205 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
HDH LVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV
Sbjct: 375 HDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 75.9 bits (185), Expect = 3e-14
Identities = 62/191 (32%), Positives = 71/191 (37%), Gaps = 61/191 (31%)
Query: 4 GPAGSIGL-------GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56
GPAG G+ G+VG QK G + E P GP GP GP+G PG
Sbjct: 986 GPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----------EHGPPGPPGPIGPVGQPGA 1035
Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV--PLSPLGPDLIPRPP 114
G P A P G + P P+G +P P
Sbjct: 1036 AGADGE-----------------PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1078
Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173
E GE GD GP G PGPRG G +GA GPQ P
Sbjct: 1079 G------------------------EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP 1114
Query: 174 GGIGNLGPPGE 184
GG+GNLGPPGE
Sbjct: 1115 GGVGNLGPPGE 1125
Score = 62.4 bits (150), Expect = 3e-10
Identities = 61/201 (30%), Positives = 71/201 (35%), Gaps = 50/201 (24%)
Query: 4 GPAGSIGL-GDVGAKAQK-----PGGGRRDSIVP-RTWEETEGIP-----------KGPS 45
GP G GL G G + K PG +D R + G+P +GPS
Sbjct: 863 GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPS 922
Query: 46 GPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLS 103
GP GP G PG G S I P P P G P+
Sbjct: 923 GPPGPAGSPGERGAAGSGGPIG-----------PPGRPGPQGPPGAAGEKGVPGEKGPIG 971
Query: 104 PLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATG 162
P G D + P LP P PG AG D +KG G PG +G G
Sbjct: 972 PTGRDGVQGPVGLPGPAG------------------PPGVAGEDGDKGEVGDPGQKGTKG 1013
Query: 163 KSGAKGPQSAPGGIGNLGPPG 183
G GP PG IG +G PG
Sbjct: 1014 NKGEHGPPGPPGPIGPVGQPG 1034
Score = 59.7 bits (143), Expect = 2e-09
Identities = 51/160 (31%), Positives = 63/160 (39%), Gaps = 41/160 (25%)
Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP 101
+GP GP+GP G GPPG++ + P P G R P + +P
Sbjct: 312 EGPPGPEGPAGLIGPPGIQGN--------------------PGPVGDPGERGPPGRAGLP 351
Query: 102 LSPLGPDLIPRPPRLPLPL-----SHSWDSWDFLAFLESVG-----------RTEPGEAG 145
G D P PP L L S D +A E+ R PG G
Sbjct: 352 ----GSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMG 407
Query: 146 DREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184
+ GP GQPG G G+SG GPQ G G GPPG+
Sbjct: 408 YTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGK 447
Score = 55.1 bits (131), Expect = 6e-08
Identities = 62/186 (33%), Positives = 71/186 (38%), Gaps = 42/186 (22%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEET-EGIPKGPSGPQGPLGYPGPPGVKD 61
GP G G G GAK + G P + T E P GP G +GP G PG G +
Sbjct: 1190 GPPGEGGPRGQDGAKGDRGEDGEPGQ--PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1247
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-LPL 120
K P A TG P+ P GP P P L LP
Sbjct: 1248 GKG-----------AKGDPGAIGAPGKTG----------PVGPAGPAGKPGPDGLRGLP- 1285
Query: 121 SHSWDSWDFLAFLESVGRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
SVG+ PG G GP G PG G G +GAKG + PG IG
Sbjct: 1286 -------------GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1332
Query: 179 LGPPGE 184
+GPPGE
Sbjct: 1333 IGPPGE 1338
Score = 54.7 bits (130), Expect = 7e-08
Identities = 58/184 (31%), Positives = 70/184 (38%), Gaps = 44/184 (23%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59
+GPAGS G G G K K G G P GP GP GP G PGP G+
Sbjct: 1234 RGPAGSPGSEGRQGGKGAKGDPG------------AIGAPGKTGPVGPAGPAGKPGPDGL 1281
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
+ P G R + P P+GP P P L
Sbjct: 1282 RG--------------------LPGSVGQQG-RPGATGQAGPPGPVGP---PGLPGLRGD 1317
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179
+ + +G PGE G EKG +G PGP+G+ G+ G G A G IG
Sbjct: 1318 AGAKGEK-GHPGLIGLIG--PPGEQG--EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG 1372
Query: 180 GPPG 183
GPPG
Sbjct: 1373 GPPG 1376
Score = 53.9 bits (128), Expect = 1e-07
Identities = 62/201 (30%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60
+G G+ GL G G ++ G I PR G P+G GP+GP G PGPPGV+
Sbjct: 487 RGDTGAQGLPGPPGEDGERGDDGE---IGPRGLPGESG-PRGLLGPKGPPGIPGPPGVRG 542
Query: 61 -DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL- 118
D +L Q +P T G+ P A + P GP P P +P
Sbjct: 543 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQ-GLPGPQGA-IGPHGEKGPQGKPGLPGMPGS 600
Query: 119 --PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
P H E T+ + +GP G PGPRG G G +G + G
Sbjct: 601 DGPPGHPGK--------EGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 652
Query: 177 GNLGPPGEM--VTGKGVNGQV 195
G G PG + KG G+V
Sbjct: 653 GEDGFPGFKGDIGVKGDRGEV 673
Score = 53.5 bits (127), Expect = 2e-07
Identities = 65/204 (31%), Positives = 76/204 (37%), Gaps = 44/204 (21%)
Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57
GP G+IG KPG G S P EG P +GPSGPQGPLGYPGP
Sbjct: 575 GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 634
Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATA--TGIRQPHSASLVPLS-----PLGPDLI 110
GVK + L H + P G++ VP S P GP
Sbjct: 635 GVKGVDGI----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGR 690
Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
P P P PG G EKG G PG G G+ G KG
Sbjct: 691 TGPTGDPGP---------------------PGLMG--EKGKLGVPGLPGYPGRQGPKGSL 727
Query: 171 SAPGGIGNLGPPGEMVTGKGVNGQ 194
PG G G G +G++G+
Sbjct: 728 GFPGFPGASGEKG----ARGLSGK 747
Score = 53.5 bits (127), Expect = 2e-07
Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 36/187 (19%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP+G G GDVG G R P + GP GP G +G GPPG K
Sbjct: 1076 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-------GPQGPPGGVGNLGPPGEK-G 1127
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIR----QPHSASLVPLSPLGPDLIPRPPRLPL 118
+P + + P P G + QP P P GP P P
Sbjct: 1128 EPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPG 1181
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
P+ D PG G E GP+GQ G +G G+ G G +PG G
Sbjct: 1182 PVGFPGD---------------PGPPG--EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGE 1224
Query: 179 LGPPGEM 185
GPPG +
Sbjct: 1225 NGPPGPL 1231
Score = 52.4 bits (124), Expect = 4e-07
Identities = 56/184 (30%), Positives = 66/184 (35%), Gaps = 39/184 (21%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP GS+G G GA +K G PR E P GP G +GP G G G K
Sbjct: 721 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRG----ERGPTGPRGQRGPRGATGKSGAKG 776
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
+ L PQ P+ G P P P G D +P P
Sbjct: 777 TSGGDGPHGPPGERGLPGPQGPN-----GFPGPKG----PPGPPGKDGLPGHPG------ 821
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180
+ GE G + K GP G PG G G +G GP G G G
Sbjct: 822 ------------------QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG 863
Query: 181 PPGE 184
PPGE
Sbjct: 864 PPGE 867
Score = 51.2 bits (121), Expect = 8e-07
Identities = 54/188 (28%), Positives = 67/188 (35%), Gaps = 46/188 (24%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
GP G G G GA + G R ++ G+P KG G G G PGPPG
Sbjct: 443 GPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED 502
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
+ D + P + G+ L P GP IP PP +
Sbjct: 503 GERG--------DDGEIGPRGLPGESGPRGL----------LGPKGPPGIPGPPGV---- 540
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGP---RGATGKSGAKGPQSAPGGI 176
R G G + GPQG+PGP +G G G GPQ A G
Sbjct: 541 -----------------RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 583
Query: 177 GNLGPPGE 184
G GP G+
Sbjct: 584 GEKGPQGK 591
Score = 50.1 bits (118), Expect = 2e-06
Identities = 56/194 (28%), Positives = 69/194 (35%), Gaps = 43/194 (22%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G G+ G GA + G R P +G+P G +G +G G PGPPG
Sbjct: 833 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGK 891
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR---------- 112
+ L P A G++ P P GP P
Sbjct: 892 DGPAGLRGFPGERGL-----PGTAGGPGLKGNEG----PSGPPGPAGSPGERGAAGSGGP 942
Query: 113 --PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
PP P P + PG AG EKG G+ GP G TG+ G +GP
Sbjct: 943 IGPPGRPGP------------------QGPPGAAG--EKGVPGEKGPIGPTGRDGVQGPV 982
Query: 171 SAPGGIGNLGPPGE 184
PG G G GE
Sbjct: 983 GLPGPAGPPGVAGE 996
Score = 49.3 bits (116), Expect = 3e-06
Identities = 59/207 (28%), Positives = 76/207 (36%), Gaps = 50/207 (24%)
Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPK-----GPSGPQGPLGYPGP 56
+GP GS+G G+ G Q+ G T+G+P GP G +GP G PG
Sbjct: 547 QGPKGSLGPQGEPGPPGQQGTPG------------TQGLPGPQGAIGPHGEKGPQGKPGL 594
Query: 57 PGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114
PG+ D P H P P G + P S PL GP +
Sbjct: 595 PGMPGSDGPP--------GH-----PGKEGPPGTKGNQGP-SGPQGPLGYPGPRGVKGVD 640
Query: 115 RLPLPLSHSWDSWD--FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPR 158
+ H + + F F +G R E G G R + GP G PGP
Sbjct: 641 GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 700
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEM 185
G G+ G G PG G GP G +
Sbjct: 701 GLMGEKGKLGVPGLPGYPGRQGPKGSL 727
Score = 47.8 bits (112), Expect = 9e-06
Identities = 56/187 (29%), Positives = 68/187 (36%), Gaps = 33/187 (17%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
G +GS G+ G+ G K + G + + E PKGP+G GP G PGP G
Sbjct: 1130 GESGSPGIQGEPGVKGPRGERGEKGES-GQPGEPGPPGPKGPTGDDGPKGNPGPVGF--- 1185
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
P P P G R A G D P P P P
Sbjct: 1186 -----------------PGDPGPPGEGGPRGQDGAK----GDRGEDGEPGQPGSPGPTGE 1224
Query: 123 SWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKS---GAKGPQSAPGGIGN 178
+ L G PG G + KG +G PG GA GK+ G GP PG G
Sbjct: 1225 NGPPGP-LGKRGPAG--SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1281
Query: 179 LGPPGEM 185
G PG +
Sbjct: 1282 RGLPGSV 1288
Score = 47.4 bits (111), Expect = 1e-05
Identities = 57/202 (28%), Positives = 74/202 (36%), Gaps = 40/202 (19%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
+GP G+ G GAK G G P G+P +GP+G GP G PGPPG K
Sbjct: 763 RGPRGATGKS--GAKGTSGGDG------PHGPPGERGLPGPQGPNGFPGPKGPPGPPG-K 813
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP--- 117
D P + P G+ P A+ P+G P PP P
Sbjct: 814 DGLP----GHPGQRGEVGFQGKTGPPGPPGVVGPQGAA-GETGPMGERGHPGPPGPPGEQ 868
Query: 118 -LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPGPRGATGKSGA 166
LP + + + +PG G K G +G PG G G G
Sbjct: 869 GLPGTAGKEGT----------KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGN 918
Query: 167 KGPQSAPGGIGNLGPPGEMVTG 188
+GP PG G+ G G +G
Sbjct: 919 EGPSGPPGPAGSPGERGAAGSG 940
Score = 45.4 bits (106), Expect = 4e-05
Identities = 56/209 (26%), Positives = 76/209 (36%), Gaps = 48/209 (22%)
Query: 3 KGPAGSIGL-------GDVGAKAQKP-----GGGRRDSIVPRTWEETEGIPKGPS----G 46
+GP G GL G G P GGG + +V + + I + G
Sbjct: 342 RGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRG 401
Query: 47 PQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLG 106
P GP+GY G PG L P +P + S L P P G
Sbjct: 402 PPGPMGYTGRPG-----------------PLGQPGSPG-------LKGESGDLGPQGPRG 437
Query: 107 PDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSG 165
P + PP + D + +PG GDR G G PG +G G +G
Sbjct: 438 PQGLTGPPGKAGRRGRA--GADGARGMPG----DPGVKGDRGFDGLPGLPGEKGHRGDTG 491
Query: 166 AKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194
A+G PG G G GE + +G+ G+
Sbjct: 492 AQGLPGPPGEDGERGDDGE-IGPRGLPGE 519
Score = 38.5 bits (88), Expect = 0.005
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58
GP G GL G G K K G G PKG G QGP G+PGPPG
Sbjct: 1370 GPGGPPGLPGPAGPKGAKGATG-------------PGGPKGEKGVQGPPGHPGPPG 1412
Score = 37.4 bits (85), Expect = 0.012
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 21/81 (25%)
Query: 4 GPAGSIGL-GDVGAKAQK-----------PG--GGRRDSIVPRTW-----EETEGIP--K 42
GP G GL GD GAK +K PG G + D +P + GIP
Sbjct: 1307 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1366
Query: 43 GPSGPQGPLGYPGPPGVKDSK 63
GP GP GP G PGP G K +K
Sbjct: 1367 GPIGPGGPPGLPGPAGPKGAK 1387
Score = 34.7 bits (78), Expect = 0.078
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 143 EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
E G +GP G GP G G G +G G G GPPG
Sbjct: 306 EPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 346
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+G G GL G G+ QK G + P G+P GP+GP+G G GP G K
Sbjct: 1339 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP-GPAGPKGAKGATGPGGPKG 1397
Query: 62 SK 63
K
Sbjct: 1398 EK 1399
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 75.9 bits (185), Expect = 3e-14
Identities = 62/191 (32%), Positives = 71/191 (37%), Gaps = 61/191 (31%)
Query: 4 GPAGSIGL-------GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56
GPAG G+ G+VG QK G + E P GP GP GP+G PG
Sbjct: 965 GPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----------EHGPPGPPGPIGPVGQPGA 1014
Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV--PLSPLGPDLIPRPP 114
G P A P G + P P+G +P P
Sbjct: 1015 AGADGE-----------------PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1057
Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173
E GE GD GP G PGPRG G +GA GPQ P
Sbjct: 1058 G------------------------EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP 1093
Query: 174 GGIGNLGPPGE 184
GG+GNLGPPGE
Sbjct: 1094 GGVGNLGPPGE 1104
Score = 62.4 bits (150), Expect = 3e-10
Identities = 61/201 (30%), Positives = 71/201 (35%), Gaps = 50/201 (24%)
Query: 4 GPAGSIGL-GDVGAKAQK-----PGGGRRDSIVP-RTWEETEGIP-----------KGPS 45
GP G GL G G + K PG +D R + G+P +GPS
Sbjct: 842 GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPS 901
Query: 46 GPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLS 103
GP GP G PG G S I P P P G P+
Sbjct: 902 GPPGPAGSPGERGAAGSGGPIG-----------PPGRPGPQGPPGAAGEKGVPGEKGPIG 950
Query: 104 PLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATG 162
P G D + P LP P PG AG D +KG G PG +G G
Sbjct: 951 PTGRDGVQGPVGLPGPAG------------------PPGVAGEDGDKGEVGDPGQKGTKG 992
Query: 163 KSGAKGPQSAPGGIGNLGPPG 183
G GP PG IG +G PG
Sbjct: 993 NKGEHGPPGPPGPIGPVGQPG 1013
Score = 59.7 bits (143), Expect = 2e-09
Identities = 51/160 (31%), Positives = 63/160 (39%), Gaps = 41/160 (25%)
Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP 101
+GP GP+GP G GPPG++ + P P G R P + +P
Sbjct: 291 EGPPGPEGPAGLIGPPGIQGN--------------------PGPVGDPGERGPPGRAGLP 330
Query: 102 LSPLGPDLIPRPPRLPLPL-----SHSWDSWDFLAFLESVG-----------RTEPGEAG 145
G D P PP L L S D +A E+ R PG G
Sbjct: 331 ----GSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMG 386
Query: 146 DREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184
+ GP GQPG G G+SG GPQ G G GPPG+
Sbjct: 387 YTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGK 426
Score = 55.1 bits (131), Expect = 6e-08
Identities = 62/186 (33%), Positives = 71/186 (38%), Gaps = 42/186 (22%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEET-EGIPKGPSGPQGPLGYPGPPGVKD 61
GP G G G GAK + G P + T E P GP G +GP G PG G +
Sbjct: 1169 GPPGEGGPRGQDGAKGDRGEDGEPGQ--PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1226
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-LPL 120
K P A TG P+ P GP P P L LP
Sbjct: 1227 GKG-----------AKGDPGAIGAPGKTG----------PVGPAGPAGKPGPDGLRGLP- 1264
Query: 121 SHSWDSWDFLAFLESVGRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
SVG+ PG G GP G PG G G +GAKG + PG IG
Sbjct: 1265 -------------GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1311
Query: 179 LGPPGE 184
+GPPGE
Sbjct: 1312 IGPPGE 1317
Score = 54.7 bits (130), Expect = 7e-08
Identities = 58/184 (31%), Positives = 70/184 (38%), Gaps = 44/184 (23%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59
+GPAGS G G G K K G G P GP GP GP G PGP G+
Sbjct: 1213 RGPAGSPGSEGRQGGKGAKGDPG------------AIGAPGKTGPVGPAGPAGKPGPDGL 1260
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
+ P G R + P P+GP P P L
Sbjct: 1261 RG--------------------LPGSVGQQG-RPGATGQAGPPGPVGP---PGLPGLRGD 1296
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179
+ + +G PGE G EKG +G PGP+G+ G+ G G A G IG
Sbjct: 1297 AGAKGEK-GHPGLIGLIG--PPGEQG--EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG 1351
Query: 180 GPPG 183
GPPG
Sbjct: 1352 GPPG 1355
Score = 53.9 bits (128), Expect = 1e-07
Identities = 62/201 (30%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60
+G G+ GL G G ++ G I PR G P+G GP+GP G PGPPGV+
Sbjct: 466 RGDTGAQGLPGPPGEDGERGDDGE---IGPRGLPGESG-PRGLLGPKGPPGIPGPPGVRG 521
Query: 61 -DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL- 118
D +L Q +P T G+ P A + P GP P P +P
Sbjct: 522 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQ-GLPGPQGA-IGPHGEKGPQGKPGLPGMPGS 579
Query: 119 --PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
P H E T+ + +GP G PGPRG G G +G + G
Sbjct: 580 DGPPGHPGK--------EGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 631
Query: 177 GNLGPPGEM--VTGKGVNGQV 195
G G PG + KG G+V
Sbjct: 632 GEDGFPGFKGDIGVKGDRGEV 652
Score = 53.5 bits (127), Expect = 2e-07
Identities = 65/204 (31%), Positives = 76/204 (37%), Gaps = 44/204 (21%)
Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57
GP G+IG KPG G S P EG P +GPSGPQGPLGYPGP
Sbjct: 554 GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 613
Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATA--TGIRQPHSASLVPLS-----PLGPDLI 110
GVK + L H + P G++ VP S P GP
Sbjct: 614 GVKGVDGI----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGR 669
Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
P P P PG G EKG G PG G G+ G KG
Sbjct: 670 TGPTGDPGP---------------------PGLMG--EKGKLGVPGLPGYPGRQGPKGSL 706
Query: 171 SAPGGIGNLGPPGEMVTGKGVNGQ 194
PG G G G +G++G+
Sbjct: 707 GFPGFPGASGEKG----ARGLSGK 726
Score = 53.5 bits (127), Expect = 2e-07
Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 36/187 (19%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP+G G GDVG G R P + GP GP G +G GPPG K
Sbjct: 1055 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-------GPQGPPGGVGNLGPPGEK-G 1106
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIR----QPHSASLVPLSPLGPDLIPRPPRLPL 118
+P + + P P G + QP P P GP P P
Sbjct: 1107 EPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPG 1160
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
P+ D PG G E GP+GQ G +G G+ G G +PG G
Sbjct: 1161 PVGFPGD---------------PGPPG--EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGE 1203
Query: 179 LGPPGEM 185
GPPG +
Sbjct: 1204 NGPPGPL 1210
Score = 52.4 bits (124), Expect = 4e-07
Identities = 56/184 (30%), Positives = 66/184 (35%), Gaps = 39/184 (21%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP GS+G G GA +K G PR E P GP G +GP G G G K
Sbjct: 700 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRG----ERGPTGPRGQRGPRGATGKSGAKG 755
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
+ L PQ P+ G P P P G D +P P
Sbjct: 756 TSGGDGPHGPPGERGLPGPQGPN-----GFPGPKG----PPGPPGKDGLPGHPG------ 800
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180
+ GE G + K GP G PG G G +G GP G G G
Sbjct: 801 ------------------QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG 842
Query: 181 PPGE 184
PPGE
Sbjct: 843 PPGE 846
Score = 51.2 bits (121), Expect = 8e-07
Identities = 54/188 (28%), Positives = 67/188 (35%), Gaps = 46/188 (24%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
GP G G G GA + G R ++ G+P KG G G G PGPPG
Sbjct: 422 GPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED 481
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
+ D + P + G+ L P GP IP PP +
Sbjct: 482 GERG--------DDGEIGPRGLPGESGPRGL----------LGPKGPPGIPGPPGV---- 519
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGP---RGATGKSGAKGPQSAPGGI 176
R G G + GPQG+PGP +G G G GPQ A G
Sbjct: 520 -----------------RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 562
Query: 177 GNLGPPGE 184
G GP G+
Sbjct: 563 GEKGPQGK 570
Score = 50.1 bits (118), Expect = 2e-06
Identities = 56/194 (28%), Positives = 69/194 (35%), Gaps = 43/194 (22%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G G+ G GA + G R P +G+P G +G +G G PGPPG
Sbjct: 812 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGK 870
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR---------- 112
+ L P A G++ P P GP P
Sbjct: 871 DGPAGLRGFPGERGL-----PGTAGGPGLKGNEG----PSGPPGPAGSPGERGAAGSGGP 921
Query: 113 --PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
PP P P + PG AG EKG G+ GP G TG+ G +GP
Sbjct: 922 IGPPGRPGP------------------QGPPGAAG--EKGVPGEKGPIGPTGRDGVQGPV 961
Query: 171 SAPGGIGNLGPPGE 184
PG G G GE
Sbjct: 962 GLPGPAGPPGVAGE 975
Score = 49.3 bits (116), Expect = 3e-06
Identities = 59/207 (28%), Positives = 76/207 (36%), Gaps = 50/207 (24%)
Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPK-----GPSGPQGPLGYPGP 56
+GP GS+G G+ G Q+ G T+G+P GP G +GP G PG
Sbjct: 526 QGPKGSLGPQGEPGPPGQQGTPG------------TQGLPGPQGAIGPHGEKGPQGKPGL 573
Query: 57 PGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114
PG+ D P H P P G + P S PL GP +
Sbjct: 574 PGMPGSDGPP--------GH-----PGKEGPPGTKGNQGP-SGPQGPLGYPGPRGVKGVD 619
Query: 115 RLPLPLSHSWDSWD--FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPR 158
+ H + + F F +G R E G G R + GP G PGP
Sbjct: 620 GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 679
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEM 185
G G+ G G PG G GP G +
Sbjct: 680 GLMGEKGKLGVPGLPGYPGRQGPKGSL 706
Score = 47.8 bits (112), Expect = 9e-06
Identities = 56/187 (29%), Positives = 68/187 (36%), Gaps = 33/187 (17%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
G +GS G+ G+ G K + G + + E PKGP+G GP G PGP G
Sbjct: 1109 GESGSPGIQGEPGVKGPRGERGEKGES-GQPGEPGPPGPKGPTGDDGPKGNPGPVGF--- 1164
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
P P P G R A G D P P P P
Sbjct: 1165 -----------------PGDPGPPGEGGPRGQDGAK----GDRGEDGEPGQPGSPGPTGE 1203
Query: 123 SWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKS---GAKGPQSAPGGIGN 178
+ L G PG G + KG +G PG GA GK+ G GP PG G
Sbjct: 1204 NGPPGP-LGKRGPAG--SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1260
Query: 179 LGPPGEM 185
G PG +
Sbjct: 1261 RGLPGSV 1267
Score = 47.4 bits (111), Expect = 1e-05
Identities = 57/202 (28%), Positives = 74/202 (36%), Gaps = 40/202 (19%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
+GP G+ G GAK G G P G+P +GP+G GP G PGPPG K
Sbjct: 742 RGPRGATGKS--GAKGTSGGDG------PHGPPGERGLPGPQGPNGFPGPKGPPGPPG-K 792
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP--- 117
D P + P G+ P A+ P+G P PP P
Sbjct: 793 DGLP----GHPGQRGEVGFQGKTGPPGPPGVVGPQGAA-GETGPMGERGHPGPPGPPGEQ 847
Query: 118 -LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPGPRGATGKSGA 166
LP + + + +PG G K G +G PG G G G
Sbjct: 848 GLPGTAGKEGT----------KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGN 897
Query: 167 KGPQSAPGGIGNLGPPGEMVTG 188
+GP PG G+ G G +G
Sbjct: 898 EGPSGPPGPAGSPGERGAAGSG 919
Score = 45.4 bits (106), Expect = 4e-05
Identities = 56/209 (26%), Positives = 76/209 (36%), Gaps = 48/209 (22%)
Query: 3 KGPAGSIGL-------GDVGAKAQKP-----GGGRRDSIVPRTWEETEGIPKGPS----G 46
+GP G GL G G P GGG + +V + + I + G
Sbjct: 321 RGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRG 380
Query: 47 PQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLG 106
P GP+GY G PG L P +P + S L P P G
Sbjct: 381 PPGPMGYTGRPG-----------------PLGQPGSPG-------LKGESGDLGPQGPRG 416
Query: 107 PDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSG 165
P + PP + D + +PG GDR G G PG +G G +G
Sbjct: 417 PQGLTGPPGKAGRRGRA--GADGARGMPG----DPGVKGDRGFDGLPGLPGEKGHRGDTG 470
Query: 166 AKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194
A+G PG G G GE + +G+ G+
Sbjct: 471 AQGLPGPPGEDGERGDDGE-IGPRGLPGE 498
Score = 38.5 bits (88), Expect = 0.005
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58
GP G GL G G K K G G PKG G QGP G+PGPPG
Sbjct: 1349 GPGGPPGLPGPAGPKGAKGATG-------------PGGPKGEKGVQGPPGHPGPPG 1391
Score = 37.4 bits (85), Expect = 0.012
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 21/81 (25%)
Query: 4 GPAGSIGL-GDVGAKAQK-----------PG--GGRRDSIVPRTW-----EETEGIP--K 42
GP G GL GD GAK +K PG G + D +P + GIP
Sbjct: 1286 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1345
Query: 43 GPSGPQGPLGYPGPPGVKDSK 63
GP GP GP G PGP G K +K
Sbjct: 1346 GPIGPGGPPGLPGPAGPKGAK 1366
Score = 34.7 bits (78), Expect = 0.078
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 143 EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
E G +GP G GP G G G +G G G GPPG
Sbjct: 285 EPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 325
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+G G GL G G+ QK G + P G+P GP+GP+G G GP G K
Sbjct: 1318 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP-GPAGPKGAKGATGPGGPKG 1376
Query: 62 SK 63
K
Sbjct: 1377 EK 1378
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 75.9 bits (185), Expect = 3e-14
Identities = 62/191 (32%), Positives = 71/191 (37%), Gaps = 61/191 (31%)
Query: 4 GPAGSIGL-------GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56
GPAG G+ G+VG QK G + E P GP GP GP+G PG
Sbjct: 1072 GPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----------EHGPPGPPGPIGPVGQPGA 1121
Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV--PLSPLGPDLIPRPP 114
G P A P G + P P+G +P P
Sbjct: 1122 AGADGE-----------------PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1164
Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173
E GE GD GP G PGPRG G +GA GPQ P
Sbjct: 1165 G------------------------EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP 1200
Query: 174 GGIGNLGPPGE 184
GG+GNLGPPGE
Sbjct: 1201 GGVGNLGPPGE 1211
Score = 65.9 bits (159), Expect = 3e-11
Identities = 62/198 (31%), Positives = 77/198 (38%), Gaps = 42/198 (21%)
Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63
GPA S GA A P G + + P E + +GP GP+GP G GPPG++ +
Sbjct: 361 GPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGN- 418
Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL--- 120
P P G R P + +P G D P PP L L
Sbjct: 419 -------------------PGPVGDPGERGPPGRAGLP----GSDGAPGPPGTSLMLPFR 455
Query: 121 --SHSWDSWDFLAFLESVG-----------RTEPGEAGDREK-GPQGQPGPRGATGKSGA 166
S D +A E+ R PG G + GP GQPG G G+SG
Sbjct: 456 FGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGD 515
Query: 167 KGPQSAPGGIGNLGPPGE 184
GPQ G G GPPG+
Sbjct: 516 LGPQGPRGPQGLTGPPGK 533
Score = 62.4 bits (150), Expect = 3e-10
Identities = 61/201 (30%), Positives = 71/201 (35%), Gaps = 50/201 (24%)
Query: 4 GPAGSIGL-GDVGAKAQK-----PGGGRRDSIVP-RTWEETEGIP-----------KGPS 45
GP G GL G G + K PG +D R + G+P +GPS
Sbjct: 949 GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPS 1008
Query: 46 GPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLS 103
GP GP G PG G S I P P P G P+
Sbjct: 1009 GPPGPAGSPGERGAAGSGGPIG-----------PPGRPGPQGPPGAAGEKGVPGEKGPIG 1057
Query: 104 PLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATG 162
P G D + P LP P PG AG D +KG G PG +G G
Sbjct: 1058 PTGRDGVQGPVGLPGPAG------------------PPGVAGEDGDKGEVGDPGQKGTKG 1099
Query: 163 KSGAKGPQSAPGGIGNLGPPG 183
G GP PG IG +G PG
Sbjct: 1100 NKGEHGPPGPPGPIGPVGQPG 1120
Score = 55.1 bits (131), Expect = 6e-08
Identities = 62/186 (33%), Positives = 71/186 (38%), Gaps = 42/186 (22%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEET-EGIPKGPSGPQGPLGYPGPPGVKD 61
GP G G G GAK + G P + T E P GP G +GP G PG G +
Sbjct: 1276 GPPGEGGPRGQDGAKGDRGEDGEPGQ--PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1333
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-LPL 120
K P A TG P+ P GP P P L LP
Sbjct: 1334 GKG-----------AKGDPGAIGAPGKTG----------PVGPAGPAGKPGPDGLRGLP- 1371
Query: 121 SHSWDSWDFLAFLESVGRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
SVG+ PG G GP G PG G G +GAKG + PG IG
Sbjct: 1372 -------------GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1418
Query: 179 LGPPGE 184
+GPPGE
Sbjct: 1419 IGPPGE 1424
Score = 54.7 bits (130), Expect = 7e-08
Identities = 58/184 (31%), Positives = 70/184 (38%), Gaps = 44/184 (23%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59
+GPAGS G G G K K G G P GP GP GP G PGP G+
Sbjct: 1320 RGPAGSPGSEGRQGGKGAKGDPG------------AIGAPGKTGPVGPAGPAGKPGPDGL 1367
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
+ P G R + P P+GP P P L
Sbjct: 1368 RG--------------------LPGSVGQQG-RPGATGQAGPPGPVGP---PGLPGLRGD 1403
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179
+ + +G PGE G EKG +G PGP+G+ G+ G G A G IG
Sbjct: 1404 AGAKGEK-GHPGLIGLIG--PPGEQG--EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG 1458
Query: 180 GPPG 183
GPPG
Sbjct: 1459 GPPG 1462
Score = 53.9 bits (128), Expect = 1e-07
Identities = 62/201 (30%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60
+G G+ GL G G ++ G I PR G P+G GP+GP G PGPPGV+
Sbjct: 573 RGDTGAQGLPGPPGEDGERGDDGE---IGPRGLPGESG-PRGLLGPKGPPGIPGPPGVRG 628
Query: 61 -DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL- 118
D +L Q +P T G+ P A + P GP P P +P
Sbjct: 629 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQ-GLPGPQGA-IGPHGEKGPQGKPGLPGMPGS 686
Query: 119 --PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
P H E T+ + +GP G PGPRG G G +G + G
Sbjct: 687 DGPPGHPGK--------EGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 738
Query: 177 GNLGPPGEM--VTGKGVNGQV 195
G G PG + KG G+V
Sbjct: 739 GEDGFPGFKGDIGVKGDRGEV 759
Score = 53.5 bits (127), Expect = 2e-07
Identities = 65/204 (31%), Positives = 76/204 (37%), Gaps = 44/204 (21%)
Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57
GP G+IG KPG G S P EG P +GPSGPQGPLGYPGP
Sbjct: 661 GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 720
Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATA--TGIRQPHSASLVPLS-----PLGPDLI 110
GVK + L H + P G++ VP S P GP
Sbjct: 721 GVKGVDGI----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGR 776
Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
P P P PG G EKG G PG G G+ G KG
Sbjct: 777 TGPTGDPGP---------------------PGLMG--EKGKLGVPGLPGYPGRQGPKGSL 813
Query: 171 SAPGGIGNLGPPGEMVTGKGVNGQ 194
PG G G G +G++G+
Sbjct: 814 GFPGFPGASGEKG----ARGLSGK 833
Score = 53.5 bits (127), Expect = 2e-07
Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 36/187 (19%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP+G G GDVG G R P + GP GP G +G GPPG K
Sbjct: 1162 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-------GPQGPPGGVGNLGPPGEK-G 1213
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIR----QPHSASLVPLSPLGPDLIPRPPRLPL 118
+P + + P P G + QP P P GP P P
Sbjct: 1214 EPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPG 1267
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
P+ D PG G E GP+GQ G +G G+ G G +PG G
Sbjct: 1268 PVGFPGD---------------PGPPG--EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGE 1310
Query: 179 LGPPGEM 185
GPPG +
Sbjct: 1311 NGPPGPL 1317
Score = 52.4 bits (124), Expect = 4e-07
Identities = 56/184 (30%), Positives = 66/184 (35%), Gaps = 39/184 (21%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP GS+G G GA +K G PR E P GP G +GP G G G K
Sbjct: 807 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRG----ERGPTGPRGQRGPRGATGKSGAKG 862
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
+ L PQ P+ G P P P G D +P P
Sbjct: 863 TSGGDGPHGPPGERGLPGPQGPN-----GFPGPKG----PPGPPGKDGLPGHPG------ 907
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180
+ GE G + K GP G PG G G +G GP G G G
Sbjct: 908 ------------------QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG 949
Query: 181 PPGE 184
PPGE
Sbjct: 950 PPGE 953
Score = 51.2 bits (121), Expect = 8e-07
Identities = 54/188 (28%), Positives = 67/188 (35%), Gaps = 46/188 (24%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
GP G G G GA + G R ++ G+P KG G G G PGPPG
Sbjct: 529 GPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED 588
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
+ D + P + G+ L P GP IP PP +
Sbjct: 589 GERG--------DDGEIGPRGLPGESGPRGL----------LGPKGPPGIPGPPGV---- 626
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGP---RGATGKSGAKGPQSAPGGI 176
R G G + GPQG+PGP +G G G GPQ A G
Sbjct: 627 -----------------RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 669
Query: 177 GNLGPPGE 184
G GP G+
Sbjct: 670 GEKGPQGK 677
Score = 50.1 bits (118), Expect = 2e-06
Identities = 56/194 (28%), Positives = 69/194 (35%), Gaps = 43/194 (22%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G G+ G GA + G R P +G+P G +G +G G PGPPG
Sbjct: 919 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGK 977
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR---------- 112
+ L P A G++ P P GP P
Sbjct: 978 DGPAGLRGFPGERGL-----PGTAGGPGLKGNEG----PSGPPGPAGSPGERGAAGSGGP 1028
Query: 113 --PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
PP P P + PG AG EKG G+ GP G TG+ G +GP
Sbjct: 1029 IGPPGRPGP------------------QGPPGAAG--EKGVPGEKGPIGPTGRDGVQGPV 1068
Query: 171 SAPGGIGNLGPPGE 184
PG G G GE
Sbjct: 1069 GLPGPAGPPGVAGE 1082
Score = 49.3 bits (116), Expect = 3e-06
Identities = 59/207 (28%), Positives = 76/207 (36%), Gaps = 50/207 (24%)
Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPK-----GPSGPQGPLGYPGP 56
+GP GS+G G+ G Q+ G T+G+P GP G +GP G PG
Sbjct: 633 QGPKGSLGPQGEPGPPGQQGTPG------------TQGLPGPQGAIGPHGEKGPQGKPGL 680
Query: 57 PGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114
PG+ D P H P P G + P S PL GP +
Sbjct: 681 PGMPGSDGPP--------GH-----PGKEGPPGTKGNQGP-SGPQGPLGYPGPRGVKGVD 726
Query: 115 RLPLPLSHSWDSWD--FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPR 158
+ H + + F F +G R E G G R + GP G PGP
Sbjct: 727 GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 786
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEM 185
G G+ G G PG G GP G +
Sbjct: 787 GLMGEKGKLGVPGLPGYPGRQGPKGSL 813
Score = 47.8 bits (112), Expect = 9e-06
Identities = 56/187 (29%), Positives = 68/187 (36%), Gaps = 33/187 (17%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
G +GS G+ G+ G K + G + + E PKGP+G GP G PGP G
Sbjct: 1216 GESGSPGIQGEPGVKGPRGERGEKGES-GQPGEPGPPGPKGPTGDDGPKGNPGPVGF--- 1271
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
P P P G R A G D P P P P
Sbjct: 1272 -----------------PGDPGPPGEGGPRGQDGAK----GDRGEDGEPGQPGSPGPTGE 1310
Query: 123 SWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKS---GAKGPQSAPGGIGN 178
+ L G PG G + KG +G PG GA GK+ G GP PG G
Sbjct: 1311 NGPPGP-LGKRGPAG--SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1367
Query: 179 LGPPGEM 185
G PG +
Sbjct: 1368 RGLPGSV 1374
Score = 47.4 bits (111), Expect = 1e-05
Identities = 57/202 (28%), Positives = 74/202 (36%), Gaps = 40/202 (19%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
+GP G+ G GAK G G P G+P +GP+G GP G PGPPG K
Sbjct: 849 RGPRGATGKS--GAKGTSGGDG------PHGPPGERGLPGPQGPNGFPGPKGPPGPPG-K 899
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP--- 117
D P + P G+ P A+ P+G P PP P
Sbjct: 900 DGLP----GHPGQRGEVGFQGKTGPPGPPGVVGPQGAA-GETGPMGERGHPGPPGPPGEQ 954
Query: 118 -LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPGPRGATGKSGA 166
LP + + + +PG G K G +G PG G G G
Sbjct: 955 GLPGTAGKEGT----------KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGN 1004
Query: 167 KGPQSAPGGIGNLGPPGEMVTG 188
+GP PG G+ G G +G
Sbjct: 1005 EGPSGPPGPAGSPGERGAAGSG 1026
Score = 45.4 bits (106), Expect = 4e-05
Identities = 56/209 (26%), Positives = 76/209 (36%), Gaps = 48/209 (22%)
Query: 3 KGPAGSIGL-------GDVGAKAQKP-----GGGRRDSIVPRTWEETEGIPKGPS----G 46
+GP G GL G G P GGG + +V + + I + G
Sbjct: 428 RGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRG 487
Query: 47 PQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLG 106
P GP+GY G PG L P +P + S L P P G
Sbjct: 488 PPGPMGYTGRPG-----------------PLGQPGSPG-------LKGESGDLGPQGPRG 523
Query: 107 PDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSG 165
P + PP + D + +PG GDR G G PG +G G +G
Sbjct: 524 PQGLTGPPGKAGRRGRA--GADGARGMPG----DPGVKGDRGFDGLPGLPGEKGHRGDTG 577
Query: 166 AKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194
A+G PG G G GE + +G+ G+
Sbjct: 578 AQGLPGPPGEDGERGDDGE-IGPRGLPGE 605
Score = 38.5 bits (88), Expect = 0.005
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58
GP G GL G G K K G G PKG G QGP G+PGPPG
Sbjct: 1456 GPGGPPGLPGPAGPKGAKGATG-------------PGGPKGEKGVQGPPGHPGPPG 1498
Score = 37.4 bits (85), Expect = 0.012
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 21/81 (25%)
Query: 4 GPAGSIGL-GDVGAKAQK-----------PG--GGRRDSIVPRTW-----EETEGIP--K 42
GP G GL GD GAK +K PG G + D +P + GIP
Sbjct: 1393 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1452
Query: 43 GPSGPQGPLGYPGPPGVKDSK 63
GP GP GP G PGP G K +K
Sbjct: 1453 GPIGPGGPPGLPGPAGPKGAK 1473
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+G G GL G G+ QK G + P G+P GP+GP+G G GP G K
Sbjct: 1425 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP-GPAGPKGAKGATGPGGPKG 1483
Query: 62 SK 63
K
Sbjct: 1484 EK 1485
>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 72.0 bits (175), Expect = 4e-13
Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 190 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 72.0 bits (175), Expect = 4e-13
Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 190 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
sapiens]
Length = 64
Score = 72.0 bits (175), Expect = 4e-13
Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 190 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 71.2 bits (173), Expect = 7e-13
Identities = 64/194 (32%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GPAG +G G+ G K + G++ S ++ E P GP+GPQGP+G PGP G D
Sbjct: 1144 GPAGPVGPPGEDGDKGEIGEPGQKGS----KGDKGEQGPPGPTGPQGPIGQPGPSGA-DG 1198
Query: 63 KPMICIALAL-----DHHTLYTPQAPSPATATGIRQP-----HSASLVPLSPLGPDLIPR 112
+P L D P P P G+ P + + + P GP PR
Sbjct: 1199 EPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPG-PR 1257
Query: 113 PPRLPLPLSHSWDSWDFLAFLESVG-RTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQ 170
P + +VG + EPGEAG+ G G PGP+G G+ G GP
Sbjct: 1258 GPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPS 1317
Query: 171 SAPGGIGNLGPPGE 184
A G G GPPG+
Sbjct: 1318 GAAGPPGPKGPPGD 1331
Score = 63.5 bits (153), Expect = 2e-10
Identities = 70/203 (34%), Positives = 79/203 (38%), Gaps = 23/203 (11%)
Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63
GPAG G G K G+ S P T E P G GP GP G G G K +K
Sbjct: 1354 GPAGQDG--PPGDKGDDGEPGQTGSPGP-TGEPGPSGPPGKRGPPGPAGPEGRQGEKGAK 1410
Query: 64 PMICIALALDHHTLYTPQA----PSPATATGIRQPHSASLVPLSPLGPDLIPRP---PRL 116
+ PQ P P GI P +P SP GPD P P P L
Sbjct: 1411 GEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSP-GPDGPPGPMGPPGL 1469
Query: 117 PLPLSHSWDSWD-----FLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQ 170
P S + + + G E GE GDR GPQG GP+G G +G GP
Sbjct: 1470 PGLKGDSGPKGEKGHPGLIGLIGPPG--EQGEKGDRGLPGPQGSSGPKGEQGITGPSGPI 1527
Query: 171 SAPGGIGNLGPPGEMVTGKGVNG 193
PG G GPPG KG G
Sbjct: 1528 GPPGPPGLPGPPGP----KGAKG 1546
Score = 62.8 bits (151), Expect = 3e-10
Identities = 62/195 (31%), Positives = 76/195 (38%), Gaps = 45/195 (23%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPLGYP 54
GP G G+ G G + G R P +G+P KG GP G G
Sbjct: 991 GPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKD 1050
Query: 55 GPPGVKD-----SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDL 109
GPPG++ P AL L + P P PA + G R P A+ GP
Sbjct: 1051 GPPGLRGFPGDRGLPGPVGALGLKGNE-GPPGPPGPAGSPGERGPAGAA-------GPIG 1102
Query: 110 IPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGP 169
IP P P PG AG EKG G+ GP+G G+ G +GP
Sbjct: 1103 IPGRPGPQGP---------------------PGPAG--EKGAPGEKGPQGPAGRDGLQGP 1139
Query: 170 QSAPGGIGNLGPPGE 184
PG G +GPPGE
Sbjct: 1140 VGLPGPAGPVGPPGE 1154
Score = 60.8 bits (146), Expect = 1e-09
Identities = 57/183 (31%), Positives = 64/183 (34%), Gaps = 55/183 (30%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP GSIG G GA +K G G PR G P+G GP+G G PGP G
Sbjct: 879 QGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTG-PRGERGPRGITGKPGPKG--- 934
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
PA G R P+ P GP P P P P
Sbjct: 935 -----------------NSGGDGPAGPPGERGPNG-------PQGPTGFPGPKGPPGP-- 968
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181
PG+ G G PG RG TG G GP PG +G GP
Sbjct: 969 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGP 1004
Query: 182 PGE 184
GE
Sbjct: 1005 TGE 1007
Score = 58.2 bits (139), Expect = 7e-09
Identities = 59/195 (30%), Positives = 77/195 (39%), Gaps = 48/195 (24%)
Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60
+GP G G +G GA + G R P + G P GP GP GP+G PG PG+K
Sbjct: 1416 EGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSP-GPDGPPGPMGPPGLPGLKG 1474
Query: 61 DSKP---------MICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111
DS P + I + P P ++G + + P P+GP P
Sbjct: 1475 DSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGIT-GPSGPIGP---P 1530
Query: 112 RPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQS 171
PP LP P PG KG +G GP G G++G GP
Sbjct: 1531 GPPGLPGP---------------------PGP-----KGAKGSSGPTGPKGEAGHPGPPG 1564
Query: 172 APGGIGNLGPPGEMV 186
P GPPGE++
Sbjct: 1565 PP------GPPGEVI 1573
Score = 57.0 bits (136), Expect = 1e-08
Identities = 71/233 (30%), Positives = 84/233 (36%), Gaps = 56/233 (24%)
Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYP--- 54
GP G+IG KPG G + P EG P +GP GPQGP+GYP
Sbjct: 733 GPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPR 792
Query: 55 ---------------------GPPGVKDSKPMICIALALDHHTLYTP-----QAPSPATA 88
G PG K + + D + P P
Sbjct: 793 GVKGADGIRGLKGTKGEKGEDGFPGFKGD-----MGIKGDRGEIGPPGPRGEDGPEGPKG 847
Query: 89 TGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFL----ESVGRTEPGEA 144
G L P G +P P P S F F E GR PG+
Sbjct: 848 RGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPK-GSIGFPGFPGANGEKGGRGTPGKP 906
Query: 145 GDREK----GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193
G R + GP+G+ GPRG TGK G KG GG G GPPGE +G NG
Sbjct: 907 GPRGQRGPTGPRGERGPRGITGKPGPKGNS---GGDGPAGPPGE----RGPNG 952
Score = 56.6 bits (135), Expect = 2e-08
Identities = 62/187 (33%), Positives = 70/187 (37%), Gaps = 27/187 (14%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
+GPAG +GL PG G +G P G GPQGP G GPPG
Sbjct: 558 RGPAGPMGLTGRPGPVGPPGSGG-----------LKGEP-GDVGPQGPRGVQGPPG-PAG 604
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
KP D P G R + +P G P P P P
Sbjct: 605 KPGRRGRAGSDG----ARGMPGQTGPKGDRGFDGLAGLP-GEKGHRGDPGPSGPPGPPGD 659
Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDR----EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177
+ D VG R PGE G R KGP G PGP G TG G GP+ G G
Sbjct: 660 DGERGDD----GEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQG 715
Query: 178 NLGPPGE 184
GPPG+
Sbjct: 716 EPGPPGQ 722
Score = 55.8 bits (133), Expect = 3e-08
Identities = 64/196 (32%), Positives = 79/196 (40%), Gaps = 36/196 (18%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK-- 60
GP+G G GD G + G + PR G P+G GP+GP G PGPPGV
Sbjct: 649 GPSGPPGPPGDDGER------GDDGEVGPRGLPGEPG-PRGLLGPKGPPGPPGPPGVTGM 701
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP--LSPLGPDLIPRPPRLPL 118
D +P + Q +P A G+ P A P PLG +P P
Sbjct: 702 DGQPGPKGNVGPQGEPGPPGQQGNPG-AQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADG 760
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177
P H PG+ G EKG QG PGP+G G G +G + A G G
Sbjct: 761 PPGH------------------PGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRG 802
Query: 178 NLGPPGEMVTGKGVNG 193
G GE KG +G
Sbjct: 803 LKGTKGE----KGEDG 814
Score = 52.4 bits (124), Expect = 4e-07
Identities = 54/185 (29%), Positives = 62/185 (33%), Gaps = 28/185 (15%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GP G +GL G G K + G+ P G P G GPQGP G G PG
Sbjct: 1222 GPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAP-GADGPQGPPGGIGNPGA 1280
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
K A P P S + P P GP P P P
Sbjct: 1281 VGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1340
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179
+ PG+ G P G+PGP G G G KG PG G+
Sbjct: 1341 VGF------------------PGDPG-----PPGEPGPAGQDGPPGDKGDDGEPGQTGSP 1377
Query: 180 GPPGE 184
GP GE
Sbjct: 1378 GPTGE 1382
Score = 48.1 bits (113), Expect = 7e-06
Identities = 45/146 (30%), Positives = 56/146 (38%), Gaps = 22/146 (15%)
Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP 101
+GP GP+GP G PGPPG + D P P A G+ P L
Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVG-----DPGERGPPGRPGLPGADGLPGPPGTML-- 520
Query: 102 LSPL----GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGP 157
+ P G D + P + S + A L+ G AG G G+PGP
Sbjct: 521 MLPFRFGGGGDAGSKGPMVSAQESQA------QAILQQARLALRGPAG--PMGLTGRPGP 572
Query: 158 RGATGKSGAKGPQSAPGGIGNLGPPG 183
G G G KG PG +G GP G
Sbjct: 573 VGPPGSGGLKG---EPGDVGPQGPRG 595
Score = 48.1 bits (113), Expect = 7e-06
Identities = 54/195 (27%), Positives = 68/195 (34%), Gaps = 57/195 (29%)
Query: 3 KGPAGSIG----LGDVGAKAQKPGGGRRDS---IVPRTWEETEGIP-----KGPSGPQGP 50
KG G IG G+ G + K GG + P + G+P G GP+G
Sbjct: 825 KGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGS 884
Query: 51 LGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110
+G+PG PG K TP P P G P G
Sbjct: 885 IGFPGFPGANGEK-----------GGRGTPGKPGPRGQRG-------------PTG---- 916
Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEP--GEAGDREKGPQGQPGPRGATGKSGAKG 168
PR R P ++ G+ P GD GP G+ GP G G +G G
Sbjct: 917 PRGERGPRGIT---------------GKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPG 961
Query: 169 PQSAPGGIGNLGPPG 183
P+ PG G G PG
Sbjct: 962 PKGPPGPPGKDGLPG 976
Score = 48.1 bits (113), Expect = 7e-06
Identities = 60/198 (30%), Positives = 70/198 (35%), Gaps = 49/198 (24%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGP------QGPLGYP 54
GPAGS G G GA GR P +G P KGP GP QGP+G P
Sbjct: 1084 GPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLP 1143
Query: 55 GPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114
GP G P+ D + P G + P P P GP P P
Sbjct: 1144 GPAG-----PVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPG----PTGPQGPIGQPGP- 1193
Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGATGKSGAK 167
S EPG G + ++GP+G PGP G G G
Sbjct: 1194 --------------------SGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLP 1233
Query: 168 GPQSAPGGIGNLGPPGEM 185
GP PG G G G+M
Sbjct: 1234 GP---PGEKGETGDVGQM 1248
Score = 43.5 bits (101), Expect = 2e-04
Identities = 53/191 (27%), Positives = 70/191 (36%), Gaps = 37/191 (19%)
Query: 4 GPAGSI--------GLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPG 55
GP G++ G GD G+K P ++S ++ +GP+GP G G PG
Sbjct: 514 GPPGTMLMLPFRFGGGGDAGSKG--PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 571
Query: 56 PPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP--LSPLGPDLIPRP 113
P G S + P P G++ P + P G D
Sbjct: 572 PVGPPGSGGL-----------KGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGM 620
Query: 114 PRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173
P P +D LA L PGE KG +G PGP G G G G +
Sbjct: 621 PGQTGPKGDR--GFDGLAGL-------PGE-----KGHRGDPGPSGPPGPPGDDGERGDD 666
Query: 174 GGIGNLGPPGE 184
G +G G PGE
Sbjct: 667 GEVGPRGLPGE 677
Score = 40.4 bits (93), Expect = 0.001
Identities = 54/202 (26%), Positives = 71/202 (35%), Gaps = 43/202 (21%)
Query: 10 GLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSG------------------PQGPL 51
G+G G + +K G I P E P+GP+G +GP
Sbjct: 444 GIG--GPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPP 501
Query: 52 GYPGPPGVKDSKP-----MICIALALDHHTLYTPQAPSPATATGIRQP--HSASLVPLSP 104
G PG PG D P M+ + + P + Q A L P
Sbjct: 502 GRPGLPGA-DGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGP 560
Query: 105 LGP-DLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATG 162
GP L RP + P S + EPG+ G + +G QG PGP G G
Sbjct: 561 AGPMGLTGRPGPVGPPGSGGL-------------KGEPGDVGPQGPRGVQGPPGPAGKPG 607
Query: 163 KSGAKGPQSAPGGIGNLGPPGE 184
+ G G A G G GP G+
Sbjct: 608 RRGRAGSDGARGMPGQTGPKGD 629
Score = 35.8 bits (81), Expect = 0.035
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 150 GPQGQPGPRGATGKSGAKGPQSAPG---GIGNLGPPGEMV 186
GP G GP G G G +GP PG G GPPG M+
Sbjct: 481 GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTML 520
Score = 31.6 bits (70), Expect = 0.66
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 141 PGEAGDREKGPQGQPGPRGATGKSG----------AKGPQSAPGGIGNLGPPGEMVTGKG 190
PG +++ +G GPRG G+ G +GP G G GPPG M G
Sbjct: 432 PGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTM----G 487
Query: 191 VNGQV 195
GQV
Sbjct: 488 PTGQV 492
>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 69.7 bits (169), Expect = 2e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + +TFHDH L+I+FLISSLVL +ISLILT KLT+ TIDAQEIETV
Sbjct: 17 IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
sapiens]
Length = 53
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/47 (74%), Positives = 40/47 (85%)
Query: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV
Sbjct: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
sapiens]
Length = 64
Score = 69.7 bits (169), Expect = 2e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + +TFHDH L+I+FLISSLVL +ISLILT KLT+ TIDAQEIETV
Sbjct: 17 IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
sapiens]
Length = 53
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/47 (74%), Positives = 40/47 (85%)
Query: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV
Sbjct: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
sapiens]
Length = 64
Score = 69.7 bits (169), Expect = 2e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + +TFHDH L+I+FLISSLVL +ISLILT KLT+ TIDAQEIETV
Sbjct: 17 IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
sapiens]
Length = 53
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/47 (74%), Positives = 40/47 (85%)
Query: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV
Sbjct: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV
Sbjct: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
sapiens]
Length = 64
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV
Sbjct: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
sapiens]
Length = 64
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV
Sbjct: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit II
[Homo sapiens]
Length = 64
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + + FHDH L+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV
Sbjct: 17 IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
sapiens]
Length = 64
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + + FHDH L+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV
Sbjct: 17 IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
sapiens]
Length = 64
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + + FHDH L+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV
Sbjct: 17 IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 67.0 bits (162), Expect = 1e-11
Identities = 69/186 (37%), Positives = 78/186 (41%), Gaps = 42/186 (22%)
Query: 4 GPAGSIGL-GDVGAKAQK-PGGGR--RDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GPAG G G GAK + P G R + PR T G P GP+G G G G PG
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP-GPAGASGNPGTDGIPGA 418
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
K S IA A P P P G P A+ PLGP P +
Sbjct: 419 KGSAGAPGIAGA--------PGFPGPRGPPG---PQGAT----GPLGPKGQTGEPGIA-- 461
Query: 120 LSHSWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
F G + EPG AG PQG PGP G GK GA+G PGG+G
Sbjct: 462 -----------GFKGEQGPKGEPGPAG-----PQGAPGPAGEEGKRGARGE---PGGVGP 502
Query: 179 LGPPGE 184
+GPPGE
Sbjct: 503 IGPPGE 508
Score = 66.2 bits (160), Expect = 2e-11
Identities = 59/182 (32%), Positives = 73/182 (40%), Gaps = 31/182 (17%)
Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
KGP G G G+ G + + G + + PR + G P P GP GP G PGPPG+
Sbjct: 119 KGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP-GPPGPPGPPGPPGLGG 177
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
+ +A D + G+ Q P+ P+GP P P P P
Sbjct: 178 NFAAQ-MAGGFDEK--------AGGAQLGVMQG------PMGPMGPRGPPGPAGAPGPQG 222
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181
F + G EPGE G GP G GP G GK G G PG G GP
Sbjct: 223 ----------FQGNPG--EPGEPG--VSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP 268
Query: 182 PG 183
PG
Sbjct: 269 PG 270
Score = 59.7 bits (143), Expect = 2e-09
Identities = 58/172 (33%), Positives = 68/172 (39%), Gaps = 35/172 (20%)
Query: 12 GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSKPMICIALA 71
G G K QK G IV PKGP GPQGP G GP G + K
Sbjct: 98 GQPGPKGQKGEPGDIKDIVG---------PKGPPGPQGPAGEQGPRGDRGDKG------- 141
Query: 72 LDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLA 131
AP P G +P + P +P GP P PP P L ++ +
Sbjct: 142 -------EKGAPGPRGRDG--EPGT----PGNP-GPPGPPGPPGPP-GLGGNFAAQMAGG 186
Query: 132 FLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
F E G + G +GP G GPRG G +GA GPQ G G G PG
Sbjct: 187 FDEKAGGAQLGVM----QGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG 234
Score = 58.2 bits (139), Expect = 7e-09
Identities = 55/188 (29%), Positives = 70/188 (37%), Gaps = 47/188 (25%)
Query: 2 AKGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60
A GP GS G G G + + G + + P GI +GP GP+G G G PG +
Sbjct: 1069 APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-QGPQGPRGDKGEAGEPGER 1127
Query: 61 DSKPMICIALALDHHTLYT-----PQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPR 115
L H +T P P P+ G P P P GP
Sbjct: 1128 ----------GLKGHRGFTGLQGLPGPPGPSGDQGASGPAG----PSGPRGP-------- 1165
Query: 116 LPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGG 175
P P+ S + + GP G PGPRG +G++G GP PG
Sbjct: 1166 -PGPVGPSGK-----------------DGANGIPGPIGPPGPRGRSGETGPAGPPGNPGP 1207
Query: 176 IGNLGPPG 183
G GPPG
Sbjct: 1208 PGPPGPPG 1215
Score = 57.8 bits (138), Expect = 9e-09
Identities = 59/186 (31%), Positives = 69/186 (37%), Gaps = 30/186 (16%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GPAG+ G G+VG G R + E E P GP+G GP G G PG K
Sbjct: 795 GPAGANGEKGEVGPPGPAGSAGARGA----PGERGETGPPGPAGFAGPPGADGQPGAKGE 850
Query: 63 KPMICIALALDHHTLYTPQAPS----PATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118
+ A PQ PS P TG+ P A P R+
Sbjct: 851 QGE---AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 907
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
P S+ PG G GP G+ GP+GA G SG G PG G
Sbjct: 908 PGSNG----------------NPGPPGP--PGPSGKDGPKGARGDSGPPGRAGEPGLQGP 949
Query: 179 LGPPGE 184
GPPGE
Sbjct: 950 AGPPGE 955
Score = 56.2 bits (134), Expect = 2e-08
Identities = 56/197 (28%), Positives = 74/197 (37%), Gaps = 14/197 (7%)
Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63
GP+G G + PG + E G GP G G PGP G+ +
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980
Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSAS--LVPLSPLGPDLIPRPPRLP---- 117
++ L P P P+ G + AS P P+GP + P P
Sbjct: 981 GIV--GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 1038
Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
P + D A ++ R E G G GP G PGP G TGK G +G A G +
Sbjct: 1039 SPGADGPPGRDGAAGVKG-DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097
Query: 177 GNLGPPGEMVTGKGVNG 193
G GP G +G+ G
Sbjct: 1098 GPSGPAG----ARGIQG 1110
Score = 54.7 bits (130), Expect = 7e-08
Identities = 59/208 (28%), Positives = 74/208 (35%), Gaps = 57/208 (27%)
Query: 2 AKGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60
A+GP G G+ G+ GA G R + + E G G G GP+G PGP G
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG-KDGGRGLTGPIGPPGPAGAN 800
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
K + P PA + G R P GP PP
Sbjct: 801 GEKGEV--------------GPPGPAGSAGARGA-PGERGETGPPGPAGFAGPPG----- 840
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGATGKSGAKGPQSA- 172
A + + E GEAG + +GP G PGP+G TG +G KG + A
Sbjct: 841 ----------ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 890
Query: 173 -----------------PGGIGNLGPPG 183
PG GN GPPG
Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGPPG 918
Score = 53.9 bits (128), Expect = 1e-07
Identities = 61/190 (32%), Positives = 71/190 (37%), Gaps = 41/190 (21%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGP--SGPQGPLGYPGPPGVK 60
+GP G +G A PG P+ ++ G P P SGP GP G PGPPG
Sbjct: 200 QGPMGPMGPRGPPGPAGAPG--------PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKP 251
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
+A P A G R P P G P P LP
Sbjct: 252 GDDG----------------EAGKPGKA-GERGPPG-------PQGARGFPGTPGLPGVK 287
Query: 121 SH----SWDSWDFLAFLESV-GRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAP 173
H D A V G + PGE G GP+G PG RG TG +GA G +
Sbjct: 288 GHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGND 347
Query: 174 GGIGNLGPPG 183
G G GPPG
Sbjct: 348 GQPGPAGPPG 357
Score = 53.9 bits (128), Expect = 1e-07
Identities = 54/188 (28%), Positives = 65/188 (34%), Gaps = 58/188 (30%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGI--PKGPSGPQGPLGYPGPP 57
G AG+ GL G+ G ++ G + PR T G PKG SGP GP G GPP
Sbjct: 687 GEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP 746
Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP 117
G++ P A GI P + GP+
Sbjct: 747 GLQGM--------------------PGERGAAGIAGP-KGDRGDVGEKGPE--------- 776
Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQSAPGGI 176
PG+ G R GP G PGP GA G+ G GP G
Sbjct: 777 ---------------------GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 815
Query: 177 GNLGPPGE 184
G G PGE
Sbjct: 816 GARGAPGE 823
Score = 52.4 bits (124), Expect = 4e-07
Identities = 57/188 (30%), Positives = 70/188 (37%), Gaps = 42/188 (22%)
Query: 2 AKGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPP 57
AKG AG+ G+ G G + G + P+ GI G G QGP G PGP
Sbjct: 418 AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA-GFKGEQGPKGEPGPA 476
Query: 58 GVKDSKPMICIALALDHHTLYTPQ-APSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116
G PQ AP PA G R + P+GP P
Sbjct: 477 G---------------------PQGAPGPAGEEGKRGARGEP-GGVGPIGP-----PGER 509
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
P + + D LA + PGE +GP G GP+GA G G G PG
Sbjct: 510 GAPGNRGFPGQDGLAGPKGA----PGE-----RGPSGLAGPKGANGDPGRPGEPGLPGAR 560
Query: 177 GNLGPPGE 184
G G PG+
Sbjct: 561 GLTGRPGD 568
Score = 52.0 bits (123), Expect = 5e-07
Identities = 58/193 (30%), Positives = 72/193 (37%), Gaps = 49/193 (25%)
Query: 2 AKGPAGSIGLGDVGAKAQKPGG-------GRRDSIVPRTWEETEGI--PKGPSGPQGPLG 52
A GPAG G GA+ + PGG G R + R + +G+ PKG G +GP G
Sbjct: 481 APGPAGEEGKR--GARGE-PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 537
Query: 53 YPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR 112
GP G D P P TG +P A P +GP P
Sbjct: 538 LAGPKGANG-----------DPGRPGEPGLPGARGLTG--RPGDAG--PQGKVGPSGAPG 582
Query: 113 PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQS 171
P P PG G R + G G PGP+GA G+ G G +
Sbjct: 583 EDGRPGP---------------------PGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 621
Query: 172 APGGIGNLGPPGE 184
PG G G PG+
Sbjct: 622 LPGAPGLRGLPGK 634
Score = 50.8 bits (120), Expect = 1e-06
Identities = 55/199 (27%), Positives = 72/199 (36%), Gaps = 43/199 (21%)
Query: 3 KGPAGSIGLGDVGAKAQKPGG-GRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP G +G + A +PG G + P + G+ KG G G +G PG PG
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPGAPG--- 1071
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
P +P PA TG +Q P+GP + P
Sbjct: 1072 -----------------PPGSPGPAGPTG-KQGDRGEAGAQGPMGPSGPAGARGIQGPQG 1113
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDRE-------KGPQGQPGPRGATGKSGAKGPQSAPG 174
D + EPGE G + +G G PGP G G SG GP G
Sbjct: 1114 PRGDKGE---------AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRG 1164
Query: 175 GIGNLGPPGEMVTGKGVNG 193
G +GP G+ G NG
Sbjct: 1165 PPGPVGPSGK----DGANG 1179
Score = 48.9 bits (115), Expect = 4e-06
Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 71/205 (34%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
+GP G G +A KPG +GP GPQG G+PG PG+
Sbjct: 242 RGPPGPPGKPGDDGEAGKPGKAGE---------------RGPPGPQGARGFPGTPGLPGV 286
Query: 63 KPMICIALALDHHTLYT--PQAPSPATATGIRQPHSASLVPLSP--LGPDLIPRPPRLPL 118
K H Y A A A G++ + SP +GP +P
Sbjct: 287 KG----------HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER---- 332
Query: 119 PLSHSWDSWDFLAFLESVGRTEP-GEAG----DREKGPQGQPGP---------------R 158
GRT P G AG D + GP G PGP +
Sbjct: 333 ------------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK 374
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPG 183
G G +GA+GP+ A G G G PG
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPG 399
Score = 48.5 bits (114), Expect = 5e-06
Identities = 54/187 (28%), Positives = 68/187 (36%), Gaps = 36/187 (19%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKG---PSGPQGPLGYPGPPGV 59
+GP+G G +PG T + P+G PSG G G PGPPG
Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 592
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-L 118
+ ++ + P P A G +P A G +P P L L
Sbjct: 593 QGARGQPGVM-----------GFPGPKGANG--EPGKA--------GEKGLPGAPGLRGL 631
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177
P E+ PG AG E+G QG PGP G G G GP G G
Sbjct: 632 PGKDG----------ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 681
Query: 178 NLGPPGE 184
+ G PGE
Sbjct: 682 DQGVPGE 688
Score = 40.8 bits (94), Expect = 0.001
Identities = 59/222 (26%), Positives = 70/222 (31%), Gaps = 69/222 (31%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
KG G+ GL + K + G E E GPSG QG G PGPPG +
Sbjct: 620 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPG-EGG 678
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDL--IPRPPRLPLPL 120
KP P A A G+ P P P + P LP
Sbjct: 679 KPG-------------DQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP--- 722
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQP---------------------GPR 158
PG G + GP G P GP+
Sbjct: 723 ------------------GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 764
Query: 159 GATGKSGAKGPQSAPGG------IGNLGPPGEMVTGKGVNGQ 194
G G G KGP+ APG G +GPPG G NG+
Sbjct: 765 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGP----AGANGE 802
Score = 32.0 bits (71), Expect = 0.50
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 153 GQPGPRGATGKSG-------AKGPQSAPGGIGNLGPPGE 184
GQPGP+G G+ G KGP G G GP G+
Sbjct: 98 GQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD 136
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 67.0 bits (162), Expect = 1e-11
Identities = 69/186 (37%), Positives = 78/186 (41%), Gaps = 42/186 (22%)
Query: 4 GPAGSIGL-GDVGAKAQK-PGGGR--RDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GPAG G G GAK + P G R + PR T G P GP+G G G G PG
Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP-GPAGASGNPGTDGIPGA 349
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
K S IA A P P P G P A+ PLGP P +
Sbjct: 350 KGSAGAPGIAGA--------PGFPGPRGPPG---PQGAT----GPLGPKGQTGEPGIA-- 392
Query: 120 LSHSWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
F G + EPG AG PQG PGP G GK GA+G PGG+G
Sbjct: 393 -----------GFKGEQGPKGEPGPAG-----PQGAPGPAGEEGKRGARGE---PGGVGP 433
Query: 179 LGPPGE 184
+GPPGE
Sbjct: 434 IGPPGE 439
Score = 66.2 bits (160), Expect = 2e-11
Identities = 59/182 (32%), Positives = 73/182 (40%), Gaps = 31/182 (17%)
Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
KGP G G G+ G + + G + + PR + G P P GP GP G PGPPG+
Sbjct: 50 KGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP-GPPGPPGPPGPPGLGG 108
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
+ +A D + G+ Q P+ P+GP P P P P
Sbjct: 109 NFAAQ-MAGGFDEK--------AGGAQLGVMQG------PMGPMGPRGPPGPAGAPGPQG 153
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181
F + G EPGE G GP G GP G GK G G PG G GP
Sbjct: 154 ----------FQGNPG--EPGEPG--VSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP 199
Query: 182 PG 183
PG
Sbjct: 200 PG 201
Score = 58.2 bits (139), Expect = 7e-09
Identities = 50/143 (34%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 41 PKGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV 100
PKGP GPQGP G GP G + K AP P G +P +
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKG--------------EKGAPGPRGRDG--EPGT---- 88
Query: 101 PLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGA 160
P +P GP P PP P L ++ + F E G + G +GP G GPRG
Sbjct: 89 PGNP-GPPGPPGPPGPP-GLGGNFAAQMAGGFDEKAGGAQLGVM----QGPMGPMGPRGP 142
Query: 161 TGKSGAKGPQSAPGGIGNLGPPG 183
G +GA GPQ G G G PG
Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPG 165
Score = 58.2 bits (139), Expect = 7e-09
Identities = 55/188 (29%), Positives = 70/188 (37%), Gaps = 47/188 (25%)
Query: 2 AKGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60
A GP GS G G G + + G + + P GI +GP GP+G G G PG +
Sbjct: 1000 APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-QGPQGPRGDKGEAGEPGER 1058
Query: 61 DSKPMICIALALDHHTLYT-----PQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPR 115
L H +T P P P+ G P P P GP
Sbjct: 1059 ----------GLKGHRGFTGLQGLPGPPGPSGDQGASGPAG----PSGPRGP-------- 1096
Query: 116 LPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGG 175
P P+ S + + GP G PGPRG +G++G GP PG
Sbjct: 1097 -PGPVGPSGK-----------------DGANGIPGPIGPPGPRGRSGETGPAGPPGNPGP 1138
Query: 176 IGNLGPPG 183
G GPPG
Sbjct: 1139 PGPPGPPG 1146
Score = 57.8 bits (138), Expect = 9e-09
Identities = 59/186 (31%), Positives = 69/186 (37%), Gaps = 30/186 (16%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GPAG+ G G+VG G R + E E P GP+G GP G G PG K
Sbjct: 726 GPAGANGEKGEVGPPGPAGSAGARGA----PGERGETGPPGPAGFAGPPGADGQPGAKGE 781
Query: 63 KPMICIALALDHHTLYTPQAPS----PATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118
+ A PQ PS P TG+ P A P R+
Sbjct: 782 QGE---AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 838
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
P S+ PG G GP G+ GP+GA G SG G PG G
Sbjct: 839 PGSNG----------------NPGPPGP--PGPSGKDGPKGARGDSGPPGRAGEPGLQGP 880
Query: 179 LGPPGE 184
GPPGE
Sbjct: 881 AGPPGE 886
Score = 56.2 bits (134), Expect = 2e-08
Identities = 56/197 (28%), Positives = 74/197 (37%), Gaps = 14/197 (7%)
Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63
GP+G G + PG + E G GP G G PGP G+ +
Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911
Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSAS--LVPLSPLGPDLIPRPPRLP---- 117
++ L P P P+ G + AS P P+GP + P P
Sbjct: 912 GIV--GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 969
Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
P + D A ++ R E G G GP G PGP G TGK G +G A G +
Sbjct: 970 SPGADGPPGRDGAAGVKG-DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028
Query: 177 GNLGPPGEMVTGKGVNG 193
G GP G +G+ G
Sbjct: 1029 GPSGPAG----ARGIQG 1041
Score = 54.7 bits (130), Expect = 7e-08
Identities = 59/208 (28%), Positives = 74/208 (35%), Gaps = 57/208 (27%)
Query: 2 AKGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60
A+GP G G+ G+ GA G R + + E G G G GP+G PGP G
Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG-KDGGRGLTGPIGPPGPAGAN 731
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
K + P PA + G R P GP PP
Sbjct: 732 GEKGEV--------------GPPGPAGSAGARGA-PGERGETGPPGPAGFAGPPG----- 771
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGATGKSGAKGPQSA- 172
A + + E GEAG + +GP G PGP+G TG +G KG + A
Sbjct: 772 ----------ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 821
Query: 173 -----------------PGGIGNLGPPG 183
PG GN GPPG
Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGPPG 849
Score = 53.9 bits (128), Expect = 1e-07
Identities = 61/190 (32%), Positives = 71/190 (37%), Gaps = 41/190 (21%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGP--SGPQGPLGYPGPPGVK 60
+GP G +G A PG P+ ++ G P P SGP GP G PGPPG
Sbjct: 131 QGPMGPMGPRGPPGPAGAPG--------PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKP 182
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120
+A P A G R P P G P P LP
Sbjct: 183 GDDG----------------EAGKPGKA-GERGPPG-------PQGARGFPGTPGLPGVK 218
Query: 121 SH----SWDSWDFLAFLESV-GRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAP 173
H D A V G + PGE G GP+G PG RG TG +GA G +
Sbjct: 219 GHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGND 278
Query: 174 GGIGNLGPPG 183
G G GPPG
Sbjct: 279 GQPGPAGPPG 288
Score = 53.9 bits (128), Expect = 1e-07
Identities = 54/188 (28%), Positives = 65/188 (34%), Gaps = 58/188 (30%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGI--PKGPSGPQGPLGYPGPP 57
G AG+ GL G+ G ++ G + PR T G PKG SGP GP G GPP
Sbjct: 618 GEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP 677
Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP 117
G++ P A GI P + GP+
Sbjct: 678 GLQGM--------------------PGERGAAGIAGP-KGDRGDVGEKGPE--------- 707
Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQSAPGGI 176
PG+ G R GP G PGP GA G+ G GP G
Sbjct: 708 ---------------------GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 746
Query: 177 GNLGPPGE 184
G G PGE
Sbjct: 747 GARGAPGE 754
Score = 52.4 bits (124), Expect = 4e-07
Identities = 57/188 (30%), Positives = 70/188 (37%), Gaps = 42/188 (22%)
Query: 2 AKGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPP 57
AKG AG+ G+ G G + G + P+ GI G G QGP G PGP
Sbjct: 349 AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA-GFKGEQGPKGEPGPA 407
Query: 58 GVKDSKPMICIALALDHHTLYTPQ-APSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116
G PQ AP PA G R + P+GP P
Sbjct: 408 G---------------------PQGAPGPAGEEGKRGARGEP-GGVGPIGP-----PGER 440
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
P + + D LA + PGE +GP G GP+GA G G G PG
Sbjct: 441 GAPGNRGFPGQDGLAGPKGA----PGE-----RGPSGLAGPKGANGDPGRPGEPGLPGAR 491
Query: 177 GNLGPPGE 184
G G PG+
Sbjct: 492 GLTGRPGD 499
Score = 52.0 bits (123), Expect = 5e-07
Identities = 58/193 (30%), Positives = 72/193 (37%), Gaps = 49/193 (25%)
Query: 2 AKGPAGSIGLGDVGAKAQKPGG-------GRRDSIVPRTWEETEGI--PKGPSGPQGPLG 52
A GPAG G GA+ + PGG G R + R + +G+ PKG G +GP G
Sbjct: 412 APGPAGEEGKR--GARGE-PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 468
Query: 53 YPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR 112
GP G D P P TG +P A P +GP P
Sbjct: 469 LAGPKGANG-----------DPGRPGEPGLPGARGLTG--RPGDAG--PQGKVGPSGAPG 513
Query: 113 PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQS 171
P P PG G R + G G PGP+GA G+ G G +
Sbjct: 514 EDGRPGP---------------------PGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 552
Query: 172 APGGIGNLGPPGE 184
PG G G PG+
Sbjct: 553 LPGAPGLRGLPGK 565
Score = 50.8 bits (120), Expect = 1e-06
Identities = 55/199 (27%), Positives = 72/199 (36%), Gaps = 43/199 (21%)
Query: 3 KGPAGSIGLGDVGAKAQKPGG-GRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP G +G + A +PG G + P + G+ KG G G +G PG PG
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPGAPG--- 1002
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
P +P PA TG +Q P+GP + P
Sbjct: 1003 -----------------PPGSPGPAGPTG-KQGDRGEAGAQGPMGPSGPAGARGIQGPQG 1044
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDRE-------KGPQGQPGPRGATGKSGAKGPQSAPG 174
D + EPGE G + +G G PGP G G SG GP G
Sbjct: 1045 PRGDKGE---------AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRG 1095
Query: 175 GIGNLGPPGEMVTGKGVNG 193
G +GP G+ G NG
Sbjct: 1096 PPGPVGPSGK----DGANG 1110
Score = 48.9 bits (115), Expect = 4e-06
Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 71/205 (34%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
+GP G G +A KPG +GP GPQG G+PG PG+
Sbjct: 173 RGPPGPPGKPGDDGEAGKPGKAGE---------------RGPPGPQGARGFPGTPGLPGV 217
Query: 63 KPMICIALALDHHTLYT--PQAPSPATATGIRQPHSASLVPLSP--LGPDLIPRPPRLPL 118
K H Y A A A G++ + SP +GP +P
Sbjct: 218 KG----------HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER---- 263
Query: 119 PLSHSWDSWDFLAFLESVGRTEP-GEAG----DREKGPQGQPGP---------------R 158
GRT P G AG D + GP G PGP +
Sbjct: 264 ------------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK 305
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPG 183
G G +GA+GP+ A G G G PG
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPG 330
Score = 48.5 bits (114), Expect = 5e-06
Identities = 54/187 (28%), Positives = 68/187 (36%), Gaps = 36/187 (19%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKG---PSGPQGPLGYPGPPGV 59
+GP+G G +PG T + P+G PSG G G PGPPG
Sbjct: 464 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 523
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-L 118
+ ++ + P P A G +P A G +P P L L
Sbjct: 524 QGARGQPGVM-----------GFPGPKGANG--EPGKA--------GEKGLPGAPGLRGL 562
Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177
P E+ PG AG E+G QG PGP G G G GP G G
Sbjct: 563 PGKDG----------ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 612
Query: 178 NLGPPGE 184
+ G PGE
Sbjct: 613 DQGVPGE 619
Score = 40.8 bits (94), Expect = 0.001
Identities = 59/222 (26%), Positives = 70/222 (31%), Gaps = 69/222 (31%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
KG G+ GL + K + G E E GPSG QG G PGPPG +
Sbjct: 551 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPG-EGG 609
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDL--IPRPPRLPLPL 120
KP P A A G+ P P P + P LP
Sbjct: 610 KPG-------------DQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP--- 653
Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQP---------------------GPR 158
PG G + GP G P GP+
Sbjct: 654 ------------------GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 695
Query: 159 GATGKSGAKGPQSAPGG------IGNLGPPGEMVTGKGVNGQ 194
G G G KGP+ APG G +GPPG G NG+
Sbjct: 696 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGP----AGANGE 733
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 140 EPGEAGDREK--GPQGQPGPRGATGKSGA------KGPQSAPGGIGNLGPPG 183
+ GE GD + GP+G PGP+G G+ G KG + APG G G PG
Sbjct: 36 QKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG 87
Score = 38.1 bits (87), Expect = 0.007
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 14/58 (24%)
Query: 140 EPGEAGD--REKGPQGQPGP---------RGATGKSGAKGPQ---SAPGGIGNLGPPG 183
EPG+ D KGP G GP RG G+ GA GP+ PG GN GPPG
Sbjct: 39 EPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 96
Score = 30.0 bits (66), Expect = 1.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 147 REKGPQGQPG-PRGATGKSGAKGPQSAPGGIGNLGPPGE 184
R+ GP+GQ G P G KGP G G GP G+
Sbjct: 29 RQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD 67
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 65.9 bits (159), Expect = 3e-11
Identities = 61/186 (32%), Positives = 70/186 (37%), Gaps = 42/186 (22%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GPAG G G GAK + G + P P GP+GP GP+G G PG
Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG-------PAGPAGPPGPIGNVGAPGA 861
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
K ++ + P ATG P +A V P GP PP P P
Sbjct: 862 KGARG-----------------SAGPPGATGF--PGAAGRV--GPPGPSGNAGPPGPPGP 900
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
R E G AG E GP G PGP G G GA GP APG G
Sbjct: 901 AGKEGGKGP---------RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGP 951
Query: 179 LGPPGE 184
G G+
Sbjct: 952 QGIAGQ 957
Score = 65.1 bits (157), Expect = 5e-11
Identities = 56/169 (33%), Positives = 69/169 (40%), Gaps = 41/169 (24%)
Query: 33 TWEETEGI--PKGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAP------- 83
T +ET G+ PKG +GP+GP G GPPG +D P L P P
Sbjct: 103 TDQETTGVEGPKGDTGPRGPRGPAGPPG-RDGIP--------GQPGLPGPPGPPGPPGPP 153
Query: 84 ------SPATATGIRQPHSASLV---PLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLE 134
+P + G + + + P+ P GP +P PP P P F
Sbjct: 154 GLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG----------FQG 203
Query: 135 SVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
G EPGE G GP G GP G GK+G G PG G GPPG
Sbjct: 204 PPG--EPGEPG--ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPG 248
Score = 65.1 bits (157), Expect = 5e-11
Identities = 66/209 (31%), Positives = 80/209 (38%), Gaps = 43/209 (20%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GPAG G G+ G G R R + +G+ GP GP G G PGP G
Sbjct: 461 GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVA-GPKGPAGERGSPGPAGP 519
Query: 60 KDSKPMIC----IALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPR 115
K S L +P +P P TG P P G D P PP
Sbjct: 520 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG----------PPGPAGQDGRPGPPG 569
Query: 116 LPLPLSHSWDSWDFLAFLESVGRT-EPGEAGDR----------------EKGPQGQPGPR 158
P + + F G EPG+AG+R E G QG PGP
Sbjct: 570 PPGARGQA----GVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 625
Query: 159 GATGKSGAKGPQSAPG--GI-GNLGPPGE 184
G G+ G +GP +PG G+ G GPPGE
Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGE 654
Score = 62.0 bits (149), Expect = 5e-10
Identities = 68/209 (32%), Positives = 82/209 (39%), Gaps = 45/209 (21%)
Query: 3 KGPAGSIGLGDVGAKAQKPGG-GRRDSIVP---RTWEETEGIP--------------KGP 44
+GP G G +A KPG G R P R T G+P KG
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGD 279
Query: 45 SGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSP 104
+GP GP G PG PG ++ P L P AP PA A G + + P P
Sbjct: 280 AGPAGPKGEPGSPG-ENGAPGQMGPRGLPGER-GRPGAPGPAGARG-NDGATGAAGPPGP 336
Query: 105 LGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKS 164
GP PP P +VG GEAG + GP+G GP+G G+
Sbjct: 337 TGP---AGPPGFP----------------GAVGAK--GEAGPQ--GPRGSEGPQGVRGEP 373
Query: 165 GAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193
G GP A G GN G G+ KG NG
Sbjct: 374 GPPGPAGAAGPAGNPGADGQ-PGAKGANG 401
Score = 62.0 bits (149), Expect = 5e-10
Identities = 61/186 (32%), Positives = 70/186 (37%), Gaps = 42/186 (22%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GPAG G G VGAK + G R S P+ G P GP+G GP G PG G +
Sbjct: 338 GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG-PPGPAGAAGPAGNPGADGQPGA 396
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
K AP A A G S P P GP P P +
Sbjct: 397 KG--------------ANGAPGIAGAPGFPGARGPS-GPQGPGGP---------PGPKGN 432
Query: 123 SWDSWDFLAFLESVGRTEPGEAGDR----EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
S + PG GD E GP G GP G G+ G +G + PG G
Sbjct: 433 SGEPG------------APGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480
Query: 179 LGPPGE 184
GPPGE
Sbjct: 481 PGPPGE 486
Score = 60.8 bits (146), Expect = 1e-09
Identities = 64/192 (33%), Positives = 77/192 (40%), Gaps = 36/192 (18%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGI-----PKGPSGPQGPLGYPGPP 57
GPAG G +G+VGA K G R S P G P GPSG GP G PGP
Sbjct: 845 GPAGPPGPIGNVGAPGAK---GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA 901
Query: 58 GVKDSK-PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116
G + K P A + P P PA G + P +P GP I +
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP-GPQGIAGQRGV 960
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE----KGPQGQPGPRGATGKSGAKGPQSA 172
VG PG+ G+R GP G+PG +G +G SG +GP
Sbjct: 961 -------------------VGL--PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGP 999
Query: 173 PGGIGNLGPPGE 184
G G GPPGE
Sbjct: 1000 MGPPGLAGPPGE 1011
Score = 57.4 bits (137), Expect = 1e-08
Identities = 59/187 (31%), Positives = 71/187 (37%), Gaps = 15/187 (8%)
Query: 2 AKGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60
A GPAG+ G G GAK G + G P+GP GP GP G G PG
Sbjct: 381 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG-PQGPGGPPGPKGNSGEPGAP 439
Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP-RLPLP 119
SK + + P PA G R GP +P PP P
Sbjct: 440 GSKG--DTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP-------GPTGLPGPPGERGGP 490
Query: 120 LSHSWDSWDFLAFLESVG--RTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
S + D +A + R PG AG + G G+PG G G G G +PG
Sbjct: 491 GSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD 550
Query: 177 GNLGPPG 183
G GPPG
Sbjct: 551 GKTGPPG 557
Score = 55.8 bits (133), Expect = 3e-08
Identities = 64/211 (30%), Positives = 78/211 (36%), Gaps = 34/211 (16%)
Query: 3 KGPAGSIGL-GDVGAK-----AQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGY--- 53
KGPAG G G G K A +PG T P G +GP GP G
Sbjct: 505 KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGR 564
Query: 54 ---PGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110
PGPPG + ++ P A G+ P A + P G D
Sbjct: 565 PGPPGPPGARGQAGVMGFPGPKG-----AAGEPGKAGERGVPGPPGA----VGPAGKDGE 615
Query: 111 PRPPRLPLPLSHSWDSWD--------FLAFLESVGRTEPGEAGDREKGPQGQPGPRGATG 162
P P + + + F G PGEAG + G QG PG GA G
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG--PPGEAG--KPGEQGVPGDLGAPG 671
Query: 163 KSGAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193
SGA+G + PG G GPPG +G NG
Sbjct: 672 PSGARGERGFPGERGVQGPPGP-AGPRGANG 701
Score = 55.1 bits (131), Expect = 6e-08
Identities = 62/198 (31%), Positives = 70/198 (35%), Gaps = 54/198 (27%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+G G IG G GA K G P G +G GP GP G+ GPPG D
Sbjct: 763 RGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG-DRGEPGPPGPAGFAGPPGA-D 820
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
+P P A A G P P P GP P P+
Sbjct: 821 GQPG-------------AKGEPGDAGAKGDAGPPG----PAGPAGP---------PGPIG 854
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181
+ VG PG KG +G GP GATG GA G PG GN GP
Sbjct: 855 N-------------VGA--PGA-----KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Query: 182 PGE-----MVTGKGVNGQ 194
PG GKG G+
Sbjct: 895 PGPPGPAGKEGGKGPRGE 912
Score = 53.5 bits (127), Expect = 2e-07
Identities = 55/188 (29%), Positives = 62/188 (32%), Gaps = 34/188 (18%)
Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
AKG G G PG ++ + E P GP+GP GP+G GP G
Sbjct: 1032 AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAG--- 1088
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
PQ P Q G P PP P
Sbjct: 1089 ------------------PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1130
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-------GPQGQPGPRGATGKSGAKGPQSAPG 174
S S + R PG AG K GP G PGPRG TG +G GP PG
Sbjct: 1131 PSGASGP------AGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPG 1184
Query: 175 GIGNLGPP 182
G GPP
Sbjct: 1185 PPGPPGPP 1192
Score = 52.0 bits (123), Expect = 5e-07
Identities = 54/200 (27%), Positives = 68/200 (34%), Gaps = 50/200 (25%)
Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63
GP G GL ++ + G + R +G +GP GP G PG PG
Sbjct: 998 GPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA---- 1053
Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHS 123
P PA +G R + P P+GP P P
Sbjct: 1054 ----------------PGPVGPAGKSGDRG-ETGPAGPAGPVGPVGARGPAGPQGPRGD- 1095
Query: 124 WDSWDFLAFLESVGRTEPGEAGDRE----------KGPQGQPGPRGATGKSGAKGPQSAP 173
+ E GE GDR +GP G PG G G SGA GP
Sbjct: 1096 --------------KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 1141
Query: 174 GGIGNLGPPGEMVTGKGVNG 193
G G+ G PG+ G+NG
Sbjct: 1142 GPPGSAGAPGK----DGLNG 1157
Score = 50.8 bits (120), Expect = 1e-06
Identities = 46/155 (29%), Positives = 58/155 (37%), Gaps = 42/155 (27%)
Query: 42 KGPSGPQGPLGYPGPPGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASL 99
+GP GP GP G GPPG ++ P + D +P A TG
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDG----SPGAKGDRGETG--------- 1040
Query: 100 VPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPR 158
P GP P P P P+ + G++GDR E GP G GP
Sbjct: 1041 ----PAGPPGAPGAPGAPGPVGPA------------------GKSGDRGETGPAGPAGPV 1078
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193
G G G GPQ G G G G+ +G+ G
Sbjct: 1079 GPVGARGPAGPQGPRGDKGETGEQGD----RGIKG 1109
Score = 43.1 bits (100), Expect = 2e-04
Identities = 55/188 (29%), Positives = 63/188 (33%), Gaps = 64/188 (34%)
Query: 4 GPAGSIGLG--DVGAKAQKPGG-----GRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56
GP G++G D A AQ P G G R P +G+P GP+GP G G PG
Sbjct: 602 GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP-GPAGPPGEAGKPGE 660
Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116
GV AP P+ A G R V GP
Sbjct: 661 QGVPGDLG-----------------APGPSGARGERGFPGERGVQ----GP--------- 690
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176
PG AG R G G PG GA G +GA G + G
Sbjct: 691 ------------------------PGPAGPR--GANGAPGNDGAKGDAGAPGAPGSQGAP 724
Query: 177 GNLGPPGE 184
G G PGE
Sbjct: 725 GLQGMPGE 732
Score = 35.8 bits (81), Expect = 0.035
Identities = 38/134 (28%), Positives = 47/134 (35%), Gaps = 29/134 (21%)
Query: 2 AKGPAGSIG----------LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPL 51
A+GPAG G GD G K + G + P +G P G SGP GP
Sbjct: 1083 ARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG-PSGASGPAGPR 1141
Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111
G PG G + + + P P TG P+GP P
Sbjct: 1142 GPPGSAGAPGKDGLNGLPGPIG--------PPGPRGRTG----------DAGPVGPPGPP 1183
Query: 112 RPPRLPLPLSHSWD 125
PP P P S +D
Sbjct: 1184 GPPGPPGPPSAGFD 1197
Score = 34.3 bits (77), Expect = 0.10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 142 GEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
G ++ G GP+G TG G +GP PG G G PG
Sbjct: 98 GSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPG 139
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 64.7 bits (156), Expect = 7e-11
Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
KG G +G GD G + PG +D + E+ + GP GP G G PGPPG K
Sbjct: 1317 KGNPGPVGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPG-KR 1374
Query: 62 SKPMICIALALDHHTLYTPQAPS--PATATGIRQPHSASLVPLSPLGPDLIPRPPRL--- 116
P A +A + P TG P+ P GP P P L
Sbjct: 1375 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----------PVGPQGPAGKPGPEGLRGI 1424
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGG 175
P P+ + PG AG D GP G PG G G G+KG + PG
Sbjct: 1425 PGPVGE---------------QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL 1469
Query: 176 IGNLGPPGE 184
IG +GPPGE
Sbjct: 1470 IGLIGPPGE 1478
Score = 64.3 bits (155), Expect = 9e-11
Identities = 57/186 (30%), Positives = 71/186 (38%), Gaps = 54/186 (29%)
Query: 4 GPAGSIG----LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GPAGS G G++G QK G ++ E P GP G QGP+G PG G
Sbjct: 1129 GPAGSPGEDGDKGEIGEPGQKGSKG----------DKGENGPPGPPGLQGPVGAPGIAG- 1177
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
D +P P+ + P P+G +P PP
Sbjct: 1178 GDGEP--------------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1219
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
E GE GD GP G PGPRG G +GA GPQ PG +G+
Sbjct: 1220 --------------------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1259
Query: 179 LGPPGE 184
+G GE
Sbjct: 1260 VGGVGE 1265
Score = 60.5 bits (145), Expect = 1e-09
Identities = 61/202 (30%), Positives = 76/202 (37%), Gaps = 65/202 (32%)
Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58
+GP G+ G+ G+ G + Q+ G++ E G P GP GP G G PGPPG
Sbjct: 1167 QGPVGAPGIAGGDGEPGPRGQQGMFGQKGD------EGARGFP-GPPGPIGLQGLPGPPG 1219
Query: 59 VKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118
K D + P P P P P G D PP
Sbjct: 1220 EKGENG--------DVGPMGPPGPPGPRG-------------PQGPNGADGPQGPP---- 1254
Query: 119 PLSHSWDSWDFLAFLESVG----RTEPGEAGD-------------REKGPQGQPGPRGAT 161
+ SVG + EPGEAG+ E+G +G+ GP GA
Sbjct: 1255 ------------GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1302
Query: 162 GKSGAKGPQSAPGGIGNLGPPG 183
G GAKGP G GN GP G
Sbjct: 1303 GPPGAKGPPGDDGPKGNPGPVG 1324
Score = 59.3 bits (142), Expect = 3e-09
Identities = 56/192 (29%), Positives = 69/192 (35%), Gaps = 31/192 (16%)
Query: 4 GPAGSIGLGDV-GAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G G+G G + +K G + P + G GP G GP+G+PG PG
Sbjct: 1276 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG-DDGPKGNPGPVGFPGDPG---- 1330
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGI-----RQPHSASLVPLSPLGPDLIPRPPRL- 116
P P PA G+ P P G P PP
Sbjct: 1331 ----------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKR 1374
Query: 117 --PLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173
P + A E+ PG+ G +GP G+PGP G G G G Q P
Sbjct: 1375 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP 1434
Query: 174 GGIGNLGPPGEM 185
G G GPPG M
Sbjct: 1435 GAAGQDGPPGPM 1446
Score = 58.5 bits (140), Expect = 5e-09
Identities = 62/198 (31%), Positives = 73/198 (36%), Gaps = 44/198 (22%)
Query: 4 GPAGSIGL----GDVGAKAQKPG----GGRRDSIVPRTWEETEGIP--------KGPSGP 47
GP G GL G GAK PG G+ R + G+P KG GP
Sbjct: 1003 GPPGEQGLPGAAGKEGAKGD-PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1061
Query: 48 QGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLSPL 105
QGP G G PG + S A + P P P G A P P
Sbjct: 1062 QGPPGPVGSPGERGS--------AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1113
Query: 106 GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSG 165
G D + P LP P + PGE GD KG G+PG +G+ G G
Sbjct: 1114 GRDGVQGPVGLPGPAGPAGS---------------PGEDGD--KGEIGEPGQKGSKGDKG 1156
Query: 166 AKGPQSAPGGIGNLGPPG 183
GP PG G +G PG
Sbjct: 1157 ENGPPGPPGLQGPVGAPG 1174
Score = 55.8 bits (133), Expect = 3e-08
Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 51/211 (24%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57
+GP G G KPG P+ +G P +GP GPQGP+G+PGP
Sbjct: 894 RGPTGPRGSRGARGPTGKPG--------PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPK 945
Query: 58 GV-----KDSKPMICIALALDHHTLYTPQA--PSPATATGIRQPHSASLVPLSPLGPDLI 110
G KD P T + + P P G + P + P+G
Sbjct: 946 GPPGPPGKDGLPG---HPGQRGETGFQGKTGPPGPGGVVGPQGPTGET----GPIGERGH 998
Query: 111 PRPPRLP----LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPG 156
P PP P LP + + + +PG G K G +G PG
Sbjct: 999 PGPPGPPGEQGLPGAAGKEG----------AKGDPGPQGISGKDGPAGLRGFPGERGLPG 1048
Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVT 187
+GA G G +GPQ PG +G+ G G T
Sbjct: 1049 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1079
Score = 54.3 bits (129), Expect = 9e-08
Identities = 64/216 (29%), Positives = 80/216 (37%), Gaps = 48/216 (22%)
Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGP 50
+GP G +GL G VG G P+ +G P +G G G
Sbjct: 540 RGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGG 599
Query: 51 LGYPGPPGVKDSKPMICI-ALALD--HHTLYTPQAP-SPATATGIRQPHS--------AS 98
G PG PG K + + L D H PQ P P G+R
Sbjct: 600 RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGE 659
Query: 99 LVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPR 158
P LGP P P P +A ++ PG G+ GPQG+PGP
Sbjct: 660 AGPRGLLGPRGTPGAPGQP-----------GMAGVDG----PPGPKGNM--GPQGEPGP- 701
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194
G+ G GPQ PG G +GPPGE KG G+
Sbjct: 702 --PGQQGNPGPQGLPGPQGPIGPPGE----KGPQGK 731
Score = 54.3 bits (129), Expect = 9e-08
Identities = 64/207 (30%), Positives = 78/207 (37%), Gaps = 25/207 (12%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
GP G G G GA + G + R ++ G+P KG G +GP G PGPPG
Sbjct: 583 GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD 642
Query: 61 DSK-------PMICIALALDHHTLY---TPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110
+ P A L TP AP G+ P P +GP
Sbjct: 643 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKGNMGPQGE 698
Query: 111 PRPPRL---PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGA 166
P PP P P E + +PG AG GP G PG G +G+ GA
Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA 758
Query: 167 KGPQSAPGGIGNLGPPGEMVTGKGVNG 193
GP G IG GP G KG +G
Sbjct: 759 LGPPGPQGPIGYPGPRGV----KGADG 781
Score = 54.3 bits (129), Expect = 9e-08
Identities = 58/191 (30%), Positives = 76/191 (39%), Gaps = 13/191 (6%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G GL G G + + G+ P +G P G +GP G G+PGPPG
Sbjct: 949 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG-PTGETGPIGERGHPGPPGPPGE 1007
Query: 63 KPMICIALALDHHTLYTPQAPSPATA-TGIRQPHSASLVPLSPLGPDLI----PRPPRLP 117
+ + A PQ S G+R +P + P L P+ P P
Sbjct: 1008 QGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGP 1067
Query: 118 LPLSHSWDSWDFLAFLESVGRT----EPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173
+ S + GR PG AG EKG G+ GP+G G+ G +GP P
Sbjct: 1068 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEKGPQGPAGRDGVQGPVGLP 1125
Query: 174 GGIGNLGPPGE 184
G G G PGE
Sbjct: 1126 GPAGPAGSPGE 1136
Score = 52.4 bits (124), Expect = 4e-07
Identities = 54/183 (29%), Positives = 60/183 (32%), Gaps = 55/183 (30%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP GS G G GA +K G PR G P+G G +GP G PGP G
Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-PRGSRGARGPTGKPGPKG--- 916
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
T P G R P P GP P P P P
Sbjct: 917 -----------------TSGGDGPPGPPGERGPQG-------PQGPVGFPGPKGPPGP-- 950
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181
PG+ G G PG RG TG G GP G +G GP
Sbjct: 951 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP 986
Query: 182 PGE 184
GE
Sbjct: 987 TGE 989
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/160 (31%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPS-PATATGIRQPHSASLV 100
+GP GP GP G GPPG+ Q P+ P G R P +
Sbjct: 453 EGPPGPAGPAGIMGPPGL---------------------QGPTGPPGDPGDRGPPGRPGL 491
Query: 101 PLSPLGPDLIPRPP--RLPLPLSHSWDSW----------DFLAFLESVG---RTEPGEAG 145
P G D +P PP L LP + D A L+ R PG G
Sbjct: 492 P----GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMG 547
Query: 146 -DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184
GP G PG GA G+SG GPQ G G GP G+
Sbjct: 548 LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 587
Score = 50.4 bits (119), Expect = 1e-06
Identities = 51/185 (27%), Positives = 66/185 (35%), Gaps = 61/185 (32%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
KGP G GL + PG ++ + E GP GPQGP+GYPGP GVK
Sbjct: 726 KGPQGKPGLAGLPGADGPPGHPGKEG------QSGEKGALGPPGPQGPIGYPGPRGVKG- 778
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
A G+R + G D P
Sbjct: 779 -------------------------ADGVRGLKGSK----GEKGEDGFP----------- 798
Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGA---KGPQSAPGGIGN 178
F +G + + GE G + GP+G+ GP G G++G GP G G
Sbjct: 799 --------GFKGDMGLKGDRGEVG--QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 848
Query: 179 LGPPG 183
LG PG
Sbjct: 849 LGVPG 853
Score = 50.1 bits (118), Expect = 2e-06
Identities = 58/219 (26%), Positives = 79/219 (36%), Gaps = 63/219 (28%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPL 51
GP G G+ G++G + G R + PR G P GP G GP
Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 696
Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111
G PGPPG + + P P G + P + P GP P
Sbjct: 697 GEPGPPGQQGN--------------------PGPQGLPGPQGP----IGPPGEKGPQGKP 732
Query: 112 RPPRLPL---PLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGAT 161
LP P H + G++G++ +GP G PGPRG
Sbjct: 733 GLAGLPGADGPPGHPG---------------KEGQSGEKGALGPPGPQGPIGYPGPRGVK 777
Query: 162 GKSGAKGPQSAPGGIGNLGPPGEM--VTGKGVNGQVFQL 198
G G +G + + G G G PG + KG G+V Q+
Sbjct: 778 GADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 816
Score = 50.1 bits (118), Expect = 2e-06
Identities = 64/218 (29%), Positives = 80/218 (36%), Gaps = 54/218 (24%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G++G G+ G Q+ G P+G GPQGP+G PG G +
Sbjct: 688 GPKGNMGPQGEPGPPGQQGNPG----------------PQGLPGPQGPIGPPGEKGPQ-G 730
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP----- 117
KP + D P P +G +L P P GP P P +
Sbjct: 731 KPGLAGLPGADG----PPGHPGKEGQSG----EKGALGPPGPQGPIGYPGPRGVKGADGV 782
Query: 118 --LPLSHSWDSWD-FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPRGA 160
L S D F F +G R E G+ G R + GP G PGP G
Sbjct: 783 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 842
Query: 161 TGKSGAKGPQSAPGGIGNLGPPGEMVTG----KGVNGQ 194
G+ G G PG G GP G TG G NG+
Sbjct: 843 AGEKGKLGVPGLPGYPGRQGPKGS--TGFPGFPGANGE 878
Score = 50.1 bits (118), Expect = 2e-06
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 48/196 (24%)
Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59
A+GP G G A KPG I E+ G+P G GP GP+G PG PG+
Sbjct: 1397 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGL 1454
Query: 60 KDSK--------PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV-PLSPLGPDLI 110
K P + + P T + P PLGP
Sbjct: 1455 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP--- 1511
Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
P PP LP P KG +G GP G G SG GP
Sbjct: 1512 PGPPGLPGPQG--------------------------PKGNKGSTGPAGQKGDSGLPGPP 1545
Query: 171 SAPGGIGNLGPPGEMV 186
+P GPPGE++
Sbjct: 1546 GSP------GPPGEVI 1555
Score = 42.7 bits (99), Expect = 3e-04
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 131 AFLESVGRTEPG--EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
A+ E + EP E G +GP G GP G G G +GP PG G+ GPPG
Sbjct: 433 AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG 487
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 64.7 bits (156), Expect = 7e-11
Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
KG G +G GD G + PG +D + E+ + GP GP G G PGPPG K
Sbjct: 1266 KGNPGPVGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPG-KR 1323
Query: 62 SKPMICIALALDHHTLYTPQAPS--PATATGIRQPHSASLVPLSPLGPDLIPRPPRL--- 116
P A +A + P TG P+ P GP P P L
Sbjct: 1324 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----------PVGPQGPAGKPGPEGLRGI 1373
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGG 175
P P+ + PG AG D GP G PG G G G+KG + PG
Sbjct: 1374 PGPVGE---------------QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL 1418
Query: 176 IGNLGPPGE 184
IG +GPPGE
Sbjct: 1419 IGLIGPPGE 1427
Score = 64.3 bits (155), Expect = 9e-11
Identities = 57/186 (30%), Positives = 71/186 (38%), Gaps = 54/186 (29%)
Query: 4 GPAGSIG----LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GPAGS G G++G QK G ++ E P GP G QGP+G PG G
Sbjct: 1078 GPAGSPGEDGDKGEIGEPGQKGSKG----------DKGENGPPGPPGLQGPVGAPGIAG- 1126
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
D +P P+ + P P+G +P PP
Sbjct: 1127 GDGEP--------------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1168
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
E GE GD GP G PGPRG G +GA GPQ PG +G+
Sbjct: 1169 --------------------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1208
Query: 179 LGPPGE 184
+G GE
Sbjct: 1209 VGGVGE 1214
Score = 60.5 bits (145), Expect = 1e-09
Identities = 61/202 (30%), Positives = 76/202 (37%), Gaps = 65/202 (32%)
Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58
+GP G+ G+ G+ G + Q+ G++ E G P GP GP G G PGPPG
Sbjct: 1116 QGPVGAPGIAGGDGEPGPRGQQGMFGQKGD------EGARGFP-GPPGPIGLQGLPGPPG 1168
Query: 59 VKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118
K D + P P P P P G D PP
Sbjct: 1169 EKGENG--------DVGPMGPPGPPGPRG-------------PQGPNGADGPQGPP---- 1203
Query: 119 PLSHSWDSWDFLAFLESVG----RTEPGEAGD-------------REKGPQGQPGPRGAT 161
+ SVG + EPGEAG+ E+G +G+ GP GA
Sbjct: 1204 ------------GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1251
Query: 162 GKSGAKGPQSAPGGIGNLGPPG 183
G GAKGP G GN GP G
Sbjct: 1252 GPPGAKGPPGDDGPKGNPGPVG 1273
Score = 59.3 bits (142), Expect = 3e-09
Identities = 56/192 (29%), Positives = 69/192 (35%), Gaps = 31/192 (16%)
Query: 4 GPAGSIGLGDV-GAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G G+G G + +K G + P + G GP G GP+G+PG PG
Sbjct: 1225 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG-DDGPKGNPGPVGFPGDPG---- 1279
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGI-----RQPHSASLVPLSPLGPDLIPRPPRL- 116
P P PA G+ P P G P PP
Sbjct: 1280 ----------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKR 1323
Query: 117 --PLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173
P + A E+ PG+ G +GP G+PGP G G G G Q P
Sbjct: 1324 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP 1383
Query: 174 GGIGNLGPPGEM 185
G G GPPG M
Sbjct: 1384 GAAGQDGPPGPM 1395
Score = 58.5 bits (140), Expect = 5e-09
Identities = 62/198 (31%), Positives = 73/198 (36%), Gaps = 44/198 (22%)
Query: 4 GPAGSIGL----GDVGAKAQKPG----GGRRDSIVPRTWEETEGIP--------KGPSGP 47
GP G GL G GAK PG G+ R + G+P KG GP
Sbjct: 952 GPPGEQGLPGAAGKEGAKGD-PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1010
Query: 48 QGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLSPL 105
QGP G G PG + S A + P P P G A P P
Sbjct: 1011 QGPPGPVGSPGERGS--------AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1062
Query: 106 GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSG 165
G D + P LP P + PGE GD KG G+PG +G+ G G
Sbjct: 1063 GRDGVQGPVGLPGPAGPAGS---------------PGEDGD--KGEIGEPGQKGSKGDKG 1105
Query: 166 AKGPQSAPGGIGNLGPPG 183
GP PG G +G PG
Sbjct: 1106 ENGPPGPPGLQGPVGAPG 1123
Score = 55.8 bits (133), Expect = 3e-08
Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 51/211 (24%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57
+GP G G KPG P+ +G P +GP GPQGP+G+PGP
Sbjct: 843 RGPTGPRGSRGARGPTGKPG--------PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPK 894
Query: 58 GV-----KDSKPMICIALALDHHTLYTPQA--PSPATATGIRQPHSASLVPLSPLGPDLI 110
G KD P T + + P P G + P + P+G
Sbjct: 895 GPPGPPGKDGLPG---HPGQRGETGFQGKTGPPGPGGVVGPQGPTGET----GPIGERGH 947
Query: 111 PRPPRLP----LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPG 156
P PP P LP + + + +PG G K G +G PG
Sbjct: 948 PGPPGPPGEQGLPGAAGKEG----------AKGDPGPQGISGKDGPAGLRGFPGERGLPG 997
Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVT 187
+GA G G +GPQ PG +G+ G G T
Sbjct: 998 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1028
Score = 54.3 bits (129), Expect = 9e-08
Identities = 64/216 (29%), Positives = 80/216 (37%), Gaps = 48/216 (22%)
Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGP 50
+GP G +GL G VG G P+ +G P +G G G
Sbjct: 489 RGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGG 548
Query: 51 LGYPGPPGVKDSKPMICI-ALALD--HHTLYTPQAP-SPATATGIRQPHS--------AS 98
G PG PG K + + L D H PQ P P G+R
Sbjct: 549 RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGE 608
Query: 99 LVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPR 158
P LGP P P P +A ++ PG G+ GPQG+PGP
Sbjct: 609 AGPRGLLGPRGTPGAPGQP-----------GMAGVDG----PPGPKGNM--GPQGEPGP- 650
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194
G+ G GPQ PG G +GPPGE KG G+
Sbjct: 651 --PGQQGNPGPQGLPGPQGPIGPPGE----KGPQGK 680
Score = 54.3 bits (129), Expect = 9e-08
Identities = 64/207 (30%), Positives = 78/207 (37%), Gaps = 25/207 (12%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
GP G G G GA + G + R ++ G+P KG G +GP G PGPPG
Sbjct: 532 GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD 591
Query: 61 DSK-------PMICIALALDHHTLY---TPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110
+ P A L TP AP G+ P P +GP
Sbjct: 592 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKGNMGPQGE 647
Query: 111 PRPPRL---PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGA 166
P PP P P E + +PG AG GP G PG G +G+ GA
Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA 707
Query: 167 KGPQSAPGGIGNLGPPGEMVTGKGVNG 193
GP G IG GP G KG +G
Sbjct: 708 LGPPGPQGPIGYPGPRGV----KGADG 730
Score = 54.3 bits (129), Expect = 9e-08
Identities = 58/191 (30%), Positives = 76/191 (39%), Gaps = 13/191 (6%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G GL G G + + G+ P +G P G +GP G G+PGPPG
Sbjct: 898 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG-PTGETGPIGERGHPGPPGPPGE 956
Query: 63 KPMICIALALDHHTLYTPQAPSPATA-TGIRQPHSASLVPLSPLGPDLI----PRPPRLP 117
+ + A PQ S G+R +P + P L P+ P P
Sbjct: 957 QGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGP 1016
Query: 118 LPLSHSWDSWDFLAFLESVGRT----EPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173
+ S + GR PG AG EKG G+ GP+G G+ G +GP P
Sbjct: 1017 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEKGPQGPAGRDGVQGPVGLP 1074
Query: 174 GGIGNLGPPGE 184
G G G PGE
Sbjct: 1075 GPAGPAGSPGE 1085
Score = 52.4 bits (124), Expect = 4e-07
Identities = 54/183 (29%), Positives = 60/183 (32%), Gaps = 55/183 (30%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP GS G G GA +K G PR G P+G G +GP G PGP G
Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-PRGSRGARGPTGKPGPKG--- 865
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
T P G R P P GP P P P P
Sbjct: 866 -----------------TSGGDGPPGPPGERGPQG-------PQGPVGFPGPKGPPGP-- 899
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181
PG+ G G PG RG TG G GP G +G GP
Sbjct: 900 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP 935
Query: 182 PGE 184
GE
Sbjct: 936 TGE 938
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/160 (31%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPS-PATATGIRQPHSASLV 100
+GP GP GP G GPPG+ Q P+ P G R P +
Sbjct: 402 EGPPGPAGPAGIMGPPGL---------------------QGPTGPPGDPGDRGPPGRPGL 440
Query: 101 PLSPLGPDLIPRPP--RLPLPLSHSWDSW----------DFLAFLESVG---RTEPGEAG 145
P G D +P PP L LP + D A L+ R PG G
Sbjct: 441 P----GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMG 496
Query: 146 -DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184
GP G PG GA G+SG GPQ G G GP G+
Sbjct: 497 LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 536
Score = 50.4 bits (119), Expect = 1e-06
Identities = 51/185 (27%), Positives = 66/185 (35%), Gaps = 61/185 (32%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
KGP G GL + PG ++ + E GP GPQGP+GYPGP GVK
Sbjct: 675 KGPQGKPGLAGLPGADGPPGHPGKEG------QSGEKGALGPPGPQGPIGYPGPRGVKG- 727
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
A G+R + G D P
Sbjct: 728 -------------------------ADGVRGLKGSK----GEKGEDGFP----------- 747
Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGA---KGPQSAPGGIGN 178
F +G + + GE G + GP+G+ GP G G++G GP G G
Sbjct: 748 --------GFKGDMGLKGDRGEVG--QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 797
Query: 179 LGPPG 183
LG PG
Sbjct: 798 LGVPG 802
Score = 50.1 bits (118), Expect = 2e-06
Identities = 58/219 (26%), Positives = 79/219 (36%), Gaps = 63/219 (28%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPL 51
GP G G+ G++G + G R + PR G P GP G GP
Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 645
Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111
G PGPPG + + P P G + P + P GP P
Sbjct: 646 GEPGPPGQQGN--------------------PGPQGLPGPQGP----IGPPGEKGPQGKP 681
Query: 112 RPPRLPL---PLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGAT 161
LP P H + G++G++ +GP G PGPRG
Sbjct: 682 GLAGLPGADGPPGHPG---------------KEGQSGEKGALGPPGPQGPIGYPGPRGVK 726
Query: 162 GKSGAKGPQSAPGGIGNLGPPGEM--VTGKGVNGQVFQL 198
G G +G + + G G G PG + KG G+V Q+
Sbjct: 727 GADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 765
Score = 50.1 bits (118), Expect = 2e-06
Identities = 64/218 (29%), Positives = 80/218 (36%), Gaps = 54/218 (24%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G++G G+ G Q+ G P+G GPQGP+G PG G +
Sbjct: 637 GPKGNMGPQGEPGPPGQQGNPG----------------PQGLPGPQGPIGPPGEKGPQ-G 679
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP----- 117
KP + D P P +G +L P P GP P P +
Sbjct: 680 KPGLAGLPGADG----PPGHPGKEGQSG----EKGALGPPGPQGPIGYPGPRGVKGADGV 731
Query: 118 --LPLSHSWDSWD-FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPRGA 160
L S D F F +G R E G+ G R + GP G PGP G
Sbjct: 732 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 791
Query: 161 TGKSGAKGPQSAPGGIGNLGPPGEMVTG----KGVNGQ 194
G+ G G PG G GP G TG G NG+
Sbjct: 792 AGEKGKLGVPGLPGYPGRQGPKGS--TGFPGFPGANGE 827
Score = 50.1 bits (118), Expect = 2e-06
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 48/196 (24%)
Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59
A+GP G G A KPG I E+ G+P G GP GP+G PG PG+
Sbjct: 1346 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGL 1403
Query: 60 KDSK--------PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV-PLSPLGPDLI 110
K P + + P T + P PLGP
Sbjct: 1404 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP--- 1460
Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
P PP LP P KG +G GP G G SG GP
Sbjct: 1461 PGPPGLPGPQG--------------------------PKGNKGSTGPAGQKGDSGLPGPP 1494
Query: 171 SAPGGIGNLGPPGEMV 186
+P GPPGE++
Sbjct: 1495 GSP------GPPGEVI 1504
Score = 42.7 bits (99), Expect = 3e-04
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 131 AFLESVGRTEPG--EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
A+ E + EP E G +GP G GP G G G +GP PG G+ GPPG
Sbjct: 382 AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG 436
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 64.7 bits (156), Expect = 7e-11
Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
KG G +G GD G + PG +D + E+ + GP GP G G PGPPG K
Sbjct: 1305 KGNPGPVGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPG-KR 1362
Query: 62 SKPMICIALALDHHTLYTPQAPS--PATATGIRQPHSASLVPLSPLGPDLIPRPPRL--- 116
P A +A + P TG P+ P GP P P L
Sbjct: 1363 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----------PVGPQGPAGKPGPEGLRGI 1412
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGG 175
P P+ + PG AG D GP G PG G G G+KG + PG
Sbjct: 1413 PGPVGE---------------QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL 1457
Query: 176 IGNLGPPGE 184
IG +GPPGE
Sbjct: 1458 IGLIGPPGE 1466
Score = 64.3 bits (155), Expect = 9e-11
Identities = 57/186 (30%), Positives = 71/186 (38%), Gaps = 54/186 (29%)
Query: 4 GPAGSIG----LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
GPAGS G G++G QK G ++ E P GP G QGP+G PG G
Sbjct: 1117 GPAGSPGEDGDKGEIGEPGQKGSKG----------DKGENGPPGPPGLQGPVGAPGIAG- 1165
Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119
D +P P+ + P P+G +P PP
Sbjct: 1166 GDGEP--------------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1207
Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178
E GE GD GP G PGPRG G +GA GPQ PG +G+
Sbjct: 1208 --------------------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1247
Query: 179 LGPPGE 184
+G GE
Sbjct: 1248 VGGVGE 1253
Score = 60.5 bits (145), Expect = 1e-09
Identities = 61/202 (30%), Positives = 76/202 (37%), Gaps = 65/202 (32%)
Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58
+GP G+ G+ G+ G + Q+ G++ E G P GP GP G G PGPPG
Sbjct: 1155 QGPVGAPGIAGGDGEPGPRGQQGMFGQKGD------EGARGFP-GPPGPIGLQGLPGPPG 1207
Query: 59 VKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118
K D + P P P P P G D PP
Sbjct: 1208 EKGENG--------DVGPMGPPGPPGPRG-------------PQGPNGADGPQGPP---- 1242
Query: 119 PLSHSWDSWDFLAFLESVG----RTEPGEAGD-------------REKGPQGQPGPRGAT 161
+ SVG + EPGEAG+ E+G +G+ GP GA
Sbjct: 1243 ------------GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1290
Query: 162 GKSGAKGPQSAPGGIGNLGPPG 183
G GAKGP G GN GP G
Sbjct: 1291 GPPGAKGPPGDDGPKGNPGPVG 1312
Score = 59.3 bits (142), Expect = 3e-09
Identities = 56/192 (29%), Positives = 69/192 (35%), Gaps = 31/192 (16%)
Query: 4 GPAGSIGLGDV-GAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G G+G G + +K G + P + G GP G GP+G+PG PG
Sbjct: 1264 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG-DDGPKGNPGPVGFPGDPG---- 1318
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGI-----RQPHSASLVPLSPLGPDLIPRPPRL- 116
P P PA G+ P P G P PP
Sbjct: 1319 ----------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKR 1362
Query: 117 --PLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173
P + A E+ PG+ G +GP G+PGP G G G G Q P
Sbjct: 1363 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP 1422
Query: 174 GGIGNLGPPGEM 185
G G GPPG M
Sbjct: 1423 GAAGQDGPPGPM 1434
Score = 58.5 bits (140), Expect = 5e-09
Identities = 62/198 (31%), Positives = 73/198 (36%), Gaps = 44/198 (22%)
Query: 4 GPAGSIGL----GDVGAKAQKPG----GGRRDSIVPRTWEETEGIP--------KGPSGP 47
GP G GL G GAK PG G+ R + G+P KG GP
Sbjct: 991 GPPGEQGLPGAAGKEGAKGD-PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1049
Query: 48 QGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLSPL 105
QGP G G PG + S A + P P P G A P P
Sbjct: 1050 QGPPGPVGSPGERGS--------AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1101
Query: 106 GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSG 165
G D + P LP P + PGE GD KG G+PG +G+ G G
Sbjct: 1102 GRDGVQGPVGLPGPAGPAGS---------------PGEDGD--KGEIGEPGQKGSKGDKG 1144
Query: 166 AKGPQSAPGGIGNLGPPG 183
GP PG G +G PG
Sbjct: 1145 ENGPPGPPGLQGPVGAPG 1162
Score = 55.8 bits (133), Expect = 3e-08
Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 51/211 (24%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57
+GP G G KPG P+ +G P +GP GPQGP+G+PGP
Sbjct: 882 RGPTGPRGSRGARGPTGKPG--------PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPK 933
Query: 58 GV-----KDSKPMICIALALDHHTLYTPQA--PSPATATGIRQPHSASLVPLSPLGPDLI 110
G KD P T + + P P G + P + P+G
Sbjct: 934 GPPGPPGKDGLPG---HPGQRGETGFQGKTGPPGPGGVVGPQGPTGET----GPIGERGH 986
Query: 111 PRPPRLP----LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPG 156
P PP P LP + + + +PG G K G +G PG
Sbjct: 987 PGPPGPPGEQGLPGAAGKEG----------AKGDPGPQGISGKDGPAGLRGFPGERGLPG 1036
Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVT 187
+GA G G +GPQ PG +G+ G G T
Sbjct: 1037 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1067
Score = 54.3 bits (129), Expect = 9e-08
Identities = 64/216 (29%), Positives = 80/216 (37%), Gaps = 48/216 (22%)
Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGP 50
+GP G +GL G VG G P+ +G P +G G G
Sbjct: 528 RGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGG 587
Query: 51 LGYPGPPGVKDSKPMICI-ALALD--HHTLYTPQAP-SPATATGIRQPHS--------AS 98
G PG PG K + + L D H PQ P P G+R
Sbjct: 588 RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGE 647
Query: 99 LVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPR 158
P LGP P P P +A ++ PG G+ GPQG+PGP
Sbjct: 648 AGPRGLLGPRGTPGAPGQP-----------GMAGVDG----PPGPKGNM--GPQGEPGP- 689
Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194
G+ G GPQ PG G +GPPGE KG G+
Sbjct: 690 --PGQQGNPGPQGLPGPQGPIGPPGE----KGPQGK 719
Score = 54.3 bits (129), Expect = 9e-08
Identities = 64/207 (30%), Positives = 78/207 (37%), Gaps = 25/207 (12%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60
GP G G G GA + G + R ++ G+P KG G +GP G PGPPG
Sbjct: 571 GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD 630
Query: 61 DSK-------PMICIALALDHHTLY---TPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110
+ P A L TP AP G+ P P +GP
Sbjct: 631 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKGNMGPQGE 686
Query: 111 PRPPRL---PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGA 166
P PP P P E + +PG AG GP G PG G +G+ GA
Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA 746
Query: 167 KGPQSAPGGIGNLGPPGEMVTGKGVNG 193
GP G IG GP G KG +G
Sbjct: 747 LGPPGPQGPIGYPGPRGV----KGADG 769
Score = 54.3 bits (129), Expect = 9e-08
Identities = 58/191 (30%), Positives = 76/191 (39%), Gaps = 13/191 (6%)
Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G GL G G + + G+ P +G P G +GP G G+PGPPG
Sbjct: 937 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG-PTGETGPIGERGHPGPPGPPGE 995
Query: 63 KPMICIALALDHHTLYTPQAPSPATA-TGIRQPHSASLVPLSPLGPDLI----PRPPRLP 117
+ + A PQ S G+R +P + P L P+ P P
Sbjct: 996 QGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGP 1055
Query: 118 LPLSHSWDSWDFLAFLESVGRT----EPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173
+ S + GR PG AG EKG G+ GP+G G+ G +GP P
Sbjct: 1056 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEKGPQGPAGRDGVQGPVGLP 1113
Query: 174 GGIGNLGPPGE 184
G G G PGE
Sbjct: 1114 GPAGPAGSPGE 1124
Score = 52.4 bits (124), Expect = 4e-07
Identities = 54/183 (29%), Positives = 60/183 (32%), Gaps = 55/183 (30%)
Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61
+GP GS G G GA +K G PR G P+G G +GP G PGP G
Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-PRGSRGARGPTGKPGPKG--- 904
Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121
T P G R P P GP P P P P
Sbjct: 905 -----------------TSGGDGPPGPPGERGPQG-------PQGPVGFPGPKGPPGP-- 938
Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181
PG+ G G PG RG TG G GP G +G GP
Sbjct: 939 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP 974
Query: 182 PGE 184
GE
Sbjct: 975 TGE 977
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/160 (31%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPS-PATATGIRQPHSASLV 100
+GP GP GP G GPPG+ Q P+ P G R P +
Sbjct: 441 EGPPGPAGPAGIMGPPGL---------------------QGPTGPPGDPGDRGPPGRPGL 479
Query: 101 PLSPLGPDLIPRPP--RLPLPLSHSWDSW----------DFLAFLESVG---RTEPGEAG 145
P G D +P PP L LP + D A L+ R PG G
Sbjct: 480 P----GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMG 535
Query: 146 -DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184
GP G PG GA G+SG GPQ G G GP G+
Sbjct: 536 LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 575
Score = 50.4 bits (119), Expect = 1e-06
Identities = 51/185 (27%), Positives = 66/185 (35%), Gaps = 61/185 (32%)
Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
KGP G GL + PG ++ + E GP GPQGP+GYPGP GVK
Sbjct: 714 KGPQGKPGLAGLPGADGPPGHPGKEG------QSGEKGALGPPGPQGPIGYPGPRGVKG- 766
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122
A G+R + G D P
Sbjct: 767 -------------------------ADGVRGLKGSK----GEKGEDGFP----------- 786
Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGA---KGPQSAPGGIGN 178
F +G + + GE G + GP+G+ GP G G++G GP G G
Sbjct: 787 --------GFKGDMGLKGDRGEVG--QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 836
Query: 179 LGPPG 183
LG PG
Sbjct: 837 LGVPG 841
Score = 50.1 bits (118), Expect = 2e-06
Identities = 58/219 (26%), Positives = 79/219 (36%), Gaps = 63/219 (28%)
Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPL 51
GP G G+ G++G + G R + PR G P GP G GP
Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 684
Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111
G PGPPG + + P P G + P + P GP P
Sbjct: 685 GEPGPPGQQGN--------------------PGPQGLPGPQGP----IGPPGEKGPQGKP 720
Query: 112 RPPRLPL---PLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGAT 161
LP P H + G++G++ +GP G PGPRG
Sbjct: 721 GLAGLPGADGPPGHPG---------------KEGQSGEKGALGPPGPQGPIGYPGPRGVK 765
Query: 162 GKSGAKGPQSAPGGIGNLGPPGEM--VTGKGVNGQVFQL 198
G G +G + + G G G PG + KG G+V Q+
Sbjct: 766 GADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 804
Score = 50.1 bits (118), Expect = 2e-06
Identities = 64/218 (29%), Positives = 80/218 (36%), Gaps = 54/218 (24%)
Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62
GP G++G G+ G Q+ G P+G GPQGP+G PG G +
Sbjct: 676 GPKGNMGPQGEPGPPGQQGNPG----------------PQGLPGPQGPIGPPGEKGPQ-G 718
Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP----- 117
KP + D P P +G +L P P GP P P +
Sbjct: 719 KPGLAGLPGADG----PPGHPGKEGQSG----EKGALGPPGPQGPIGYPGPRGVKGADGV 770
Query: 118 --LPLSHSWDSWD-FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPRGA 160
L S D F F +G R E G+ G R + GP G PGP G
Sbjct: 771 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 830
Query: 161 TGKSGAKGPQSAPGGIGNLGPPGEMVTG----KGVNGQ 194
G+ G G PG G GP G TG G NG+
Sbjct: 831 AGEKGKLGVPGLPGYPGRQGPKGS--TGFPGFPGANGE 866
Score = 50.1 bits (118), Expect = 2e-06
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 48/196 (24%)
Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59
A+GP G G A KPG I E+ G+P G GP GP+G PG PG+
Sbjct: 1385 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGL 1442
Query: 60 KDSK--------PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV-PLSPLGPDLI 110
K P + + P T + P PLGP
Sbjct: 1443 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP--- 1499
Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170
P PP LP P KG +G GP G G SG GP
Sbjct: 1500 PGPPGLPGPQG--------------------------PKGNKGSTGPAGQKGDSGLPGPP 1533
Query: 171 SAPGGIGNLGPPGEMV 186
+P GPPGE++
Sbjct: 1534 GSP------GPPGEVI 1543
Score = 42.7 bits (99), Expect = 3e-04
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 131 AFLESVGRTEPG--EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
A+ E + EP E G +GP G GP G G G +GP PG G+ GPPG
Sbjct: 421 AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG 475
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 64.7 bits (156), Expect = 7e-11
Identities = 54/158 (34%), Positives = 66/158 (41%), Gaps = 36/158 (22%)
Query: 41 PKGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAP--SPATATGIRQPHSAS 98
PKG +G +GP+G GPPG PQ P SP A + P
Sbjct: 209 PKGDAGSRGPMGMRGPPG---------------------PQGPPGSPGRAGAVGTPGERG 247
Query: 99 LVPLSPLGPDLIPRPPRLPLPLS--HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPG 156
P P GP P PP P P+ H+ S L + T +GP G PG
Sbjct: 248 --PPGPPGP---PGPPGPPAPVGPPHARISQHGDPLLSN---TFTETNNHWPQGPTGPPG 299
Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVTG-KGVNG 193
P G G G GP PG G++GPPG TG KG++G
Sbjct: 300 PPGPMGPPGPPGPTGVPGSPGHIGPPGP--TGPKGISG 335
Score = 57.0 bits (136), Expect = 1e-08
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 35/183 (19%)
Query: 3 KGPAGSIG-LGDVGAKAQK--PGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59
KG AGS G +G G + PG R V E P GP GP GP GPP
Sbjct: 210 KGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHA 269
Query: 60 KDSK---PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116
+ S+ P++ ++ + PQ P+ P P+GP P P +
Sbjct: 270 RISQHGDPLLSNTFTETNN--HWPQGPTGPPG------------PPGPMGPPGPPGPTGV 315
Query: 117 PLPLSHSWDSWDFLAFLESVGRTEP----GEAGDR-EKGPQGQPGPRGATGKSGAKGPQS 171
P H + G T P G G++ E+G +G+PGP+G+ G+ G GP+
Sbjct: 316 PGSPGH----------IGPPGPTGPKGISGHPGEKGERGLRGEPGPQGSAGQRGEPGPKG 365
Query: 172 APG 174
PG
Sbjct: 366 DPG 368
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 141 PGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183
PG+ G +++ G G PGP G G +G++GP G G GPPG
Sbjct: 189 PGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRGPPGPQGPPG 232
Score = 37.0 bits (84), Expect = 0.016
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 150 GPQGQPGPRGATGKSGAKGPQ---SAPGGIGNLGPPGE 184
GP+G G RG G G GPQ +PG G +G PGE
Sbjct: 208 GPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGE 245
>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit II
[Homo sapiens]
Length = 64
Score = 63.9 bits (154), Expect = 1e-10
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
+ + +TFHDH L+I+FLISSLVLY ISLIL LT+ S I AQEIETV
Sbjct: 17 IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,595,220
Number of Sequences: 37866
Number of extensions: 945963
Number of successful extensions: 28853
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 421
Number of HSP's that attempted gapping in prelim test: 4325
Number of HSP's gapped (non-prelim): 6058
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.