Guide to the Human Genome
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Name: LOC100287317 Sequence: fasta or formatted (53aa) NCBI GI: 239741228
Description:

PREDICTED: hypothetical protein XP_002342139

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          2           1
 C cysteine            0.0          0           0
 D aspartate           1.9          1           1
 E glutamate           3.8          2           1
 F phenylalanine       3.8          2           1
 G glycine             0.0          0           0
 H histidine           9.4          5           1
 I isoleucine         15.1          8           3
 K lysine              5.7          3           1
 L leucine            18.9         10           2
 M methionine          1.9          1           1
 N asparagine          0.0          0           0
 P proline             1.9          1           1
 Q glutamine           1.9          1           1
 R arginine            1.9          1           1
 S serine              7.5          4           2
 T threonine          13.2          7           2
 V valine              3.8          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.7          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342139 
LOC100291986          1.000   PREDICTED: hypothetical protein XP_002345402 
LOC100290244          1.000   PREDICTED: hypothetical protein XP_002346644 
LOC100292806          0.667   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289854          0.667   PREDICTED: hypothetical protein XP_002346519 
LOC100288334          0.667   PREDICTED: hypothetical protein XP_002342327 
LOC100291934          0.654   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100291321          0.654   PREDICTED: hypothetical protein XP_002347169 
LOC100287996          0.654   PREDICTED: hypothetical protein XP_002343062 
LOC100292899          0.642   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290942          0.642   PREDICTED: hypothetical protein XP_002346731 
LOC100289160          0.642   PREDICTED: hypothetical protein XP_002342599 
LOC100293518          0.642   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100291549          0.642   PREDICTED: hypothetical protein XP_002347252 
LOC100289139          0.642   PREDICTED: hypothetical protein XP_002343117 
LOC100292526          0.630   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.630   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.630   PREDICTED: hypothetical protein XP_002342515 
LOC100291574          0.556   PREDICTED: hypothetical protein XP_002345618 
LOC730037             0.556   PREDICTED: hypothetical protein 
LOC100287418          0.556   PREDICTED: hypothetical protein XP_002342289 
LOC100293197          0.506   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290105          0.506   PREDICTED: hypothetical protein XP_002346674 
LOC100288304          0.506   PREDICTED: hypothetical protein XP_002342519 
COX2                  0.494   cytochrome c oxidase subunit II 
LOC100293872          0.481   PREDICTED: hypothetical protein 
LOC100292744          0.481   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289404          0.481   PREDICTED: hypothetical protein XP_002342601 
COX2                  0.481   cytochrome c oxidase subunit II 
OR10K2                0.012   olfactory receptor, family 10, subfamily K, member 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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