Guide to the Human Genome
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Name: LOC100291574 Sequence: fasta or formatted (415aa) NCBI GI: 239753310
Description:

PREDICTED: hypothetical protein XP_002345618

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         35           2
 C cysteine            1.7          7           1
 D aspartate           3.4         14           1
 E glutamate           3.1         13           2
 F phenylalanine       2.2          9           1
 G glycine            11.6         48           2
 H histidine           3.1         13           2
 I isoleucine          4.1         17           1
 K lysine              1.7          7           1
 L leucine            11.6         48           2
 M methionine          1.0          4           1
 N asparagine          2.2          9           2
 P proline            10.8         45           2
 Q glutamine           3.9         16           1
 R arginine            6.3         26           4
 S serine             11.8         49           3
 T threonine           6.0         25           1
 V valine              4.8         20           1
 W tryptophan          1.2          5           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345618 
LOC100287418          0.979   PREDICTED: hypothetical protein XP_002342289 
LOC730037             0.401   PREDICTED: hypothetical protein 
LOC100292526          0.060   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.060   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.060   PREDICTED: hypothetical protein XP_002342515 
LOC100291934          0.055   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100292806          0.055   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100291986          0.055   PREDICTED: hypothetical protein XP_002345402 
LOC100291321          0.055   PREDICTED: hypothetical protein XP_002347169 
LOC100289854          0.055   PREDICTED: hypothetical protein XP_002346519 
LOC100290244          0.055   PREDICTED: hypothetical protein XP_002346644 
LOC100287996          0.055   PREDICTED: hypothetical protein XP_002343062 
LOC100288334          0.055   PREDICTED: hypothetical protein XP_002342327 
LOC100287317          0.055   PREDICTED: hypothetical protein XP_002342139 
LOC100293518          0.054   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100291549          0.054   PREDICTED: hypothetical protein XP_002347252 
LOC100289139          0.054   PREDICTED: hypothetical protein XP_002343117 
LOC100292899          0.048   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290942          0.048   PREDICTED: hypothetical protein XP_002346731 
LOC100289160          0.048   PREDICTED: hypothetical protein XP_002342599 
LOC100293872          0.045   PREDICTED: hypothetical protein 
LOC100293197          0.045   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290105          0.045   PREDICTED: hypothetical protein XP_002346674 
LOC100288304          0.045   PREDICTED: hypothetical protein XP_002342519 
COX2                  0.043   cytochrome c oxidase subunit II 
LOC100292744          0.041   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289404          0.041   PREDICTED: hypothetical protein XP_002342601 
COX2                  0.041   cytochrome c oxidase subunit II 
MBD6                  0.028   methyl-CpG binding domain protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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