Guide to the Human Genome
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Name: LOC100287564 Sequence: fasta or formatted (64aa) NCBI GI: 239748474
Description:

PREDICTED: similar to Cytochrome c oxidase subunit 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {64aa} PREDICTED: hypothetical protein XP_002342515
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          3           1
 C cysteine            0.0          0           0
 D aspartate           4.7          3           1
 E glutamate           4.7          3           2
 F phenylalanine       6.2          4           1
 G glycine             1.6          1           1
 H histidine           6.2          4           1
 I isoleucine         15.6         10           3
 K lysine              1.6          1           1
 L leucine            17.2         11           2
 M methionine          3.1          2           1
 N asparagine          0.0          0           0
 P proline             1.6          1           1
 Q glutamine           6.2          4           1
 R arginine            0.0          0           0
 S serine              4.7          3           1
 T threonine          15.6         10           2
 V valine              4.7          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Cytochrome c oxidase subunit ... 
LOC100292526          1.000   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          1.000   PREDICTED: hypothetical protein XP_002342515 
LOC100293518          0.750   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100292806          0.750   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100291549          0.750   PREDICTED: hypothetical protein XP_002347252 
LOC100289854          0.750   PREDICTED: hypothetical protein XP_002346519 
LOC100289139          0.750   PREDICTED: hypothetical protein XP_002343117 
LOC100288334          0.750   PREDICTED: hypothetical protein XP_002342327 
LOC100291934          0.740   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100291321          0.740   PREDICTED: hypothetical protein XP_002347169 
LOC100287996          0.740   PREDICTED: hypothetical protein XP_002343062 
LOC100292899          0.660   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290942          0.660   PREDICTED: hypothetical protein XP_002346731 
LOC100289160          0.660   PREDICTED: hypothetical protein XP_002342599 
COX2                  0.600   cytochrome c oxidase subunit II 
COX2                  0.590   cytochrome c oxidase subunit II 
LOC100292744          0.580   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289404          0.580   PREDICTED: hypothetical protein XP_002342601 
LOC100291986          0.510   PREDICTED: hypothetical protein XP_002345402 
LOC100290244          0.510   PREDICTED: hypothetical protein XP_002346644 
LOC100287317          0.510   PREDICTED: hypothetical protein XP_002342139 
LOC100291574          0.490   PREDICTED: hypothetical protein XP_002345618 
LOC730037             0.470   PREDICTED: hypothetical protein 
LOC100287418          0.470   PREDICTED: hypothetical protein XP_002342289 
LOC100293872          0.430   PREDICTED: hypothetical protein 
LOC100293197          0.420   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290105          0.420   PREDICTED: hypothetical protein XP_002346674 
LOC100288304          0.420   PREDICTED: hypothetical protein XP_002342519 
SLC16A12              0.010   solute carrier family 16 (monocarboxylic acid trans...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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