Guide to the Human Genome
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Name: LOC100294388 Sequence: fasta or formatted (270aa) NCBI GI: 239751477
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         31           2
 C cysteine            3.0          8           2
 D aspartate           3.3          9           1
 E glutamate           2.6          7           1
 F phenylalanine       1.9          5           1
 G glycine             8.9         24           2
 H histidine           2.6          7           1
 I isoleucine          3.0          8           1
 K lysine              0.7          2           1
 L leucine             7.4         20           2
 M methionine          2.2          6           1
 N asparagine          1.1          3           1
 P proline            12.2         33           2
 Q glutamine           3.7         10           1
 R arginine            6.3         17           2
 S serine             11.9         32           2
 T threonine           4.4         12           1
 V valine              7.0         19           2
 W tryptophan          4.4         12           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291956          0.991   PREDICTED: hypothetical protein XP_002345127 
LOC100287807          0.020   PREDICTED: hypothetical protein 
LOC100287807          0.020   PREDICTED: hypothetical protein XP_002342309 
LOC440017             0.013   PREDICTED: similar to double homeobox, 4 
LOC728022             0.013   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.013   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.013   PREDICTED: similar to double homeobox, 4 
LOC399839             0.013   PREDICTED: similar to double homeobox, 4 
LOC440013             0.013   PREDICTED: similar to double homeobox, 4 
LOC653548             0.013   PREDICTED: double homeobox, 4-like 
DUX4                  0.013   double homeobox, 4 
LOC728410             0.013   double homeobox, 4-like 
LOC653543             0.013   double homeobox, 4-like 
LOC653545             0.013   double homeobox, 4-like 
LOC653544             0.013   double homeobox, 4-like 
LOC441056             0.013   PREDICTED: double homeobox, 4-like 
SIK1                  0.011   SNF1-like kinase 
HES2                  0.011   hairy and enhancer of split homolog 2 
SP5                   0.011   Sp5 transcription factor 
DOCK11                0.009   dedicator of cytokinesis 11 
KIF26A                0.009   kinesin family member 26A 
LOC100134348          0.009   PREDICTED: similar to TBC1 domain family, member 3 ...
LOC729570             0.009   PREDICTED: hypothetical protein 
LOC729570             0.009   PREDICTED: hypothetical protein 
LOC729570             0.009   PREDICTED: hypothetical protein 
ZNF207                0.009   zinc finger protein 207 isoform a 
RFX4                  0.009   regulatory factor X4 isoform a 
COL1A1                0.009   alpha 1 type I collagen preproprotein 
IL2RG                 0.009   interleukin 2 receptor, gamma precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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