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Search of human proteins with 239747819
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo
sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo ... 383 e-107
gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo ... 383 e-107
gi|239753266 PREDICTED: hypothetical protein [Homo sapiens] 291 2e-79
gi|169167080 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 35 0.036
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 35 0.036
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ... 35 0.047
gi|38787970 tensin like C1 domain containing phosphatase isoform... 33 0.14
gi|38787957 tensin like C1 domain containing phosphatase isoform... 33 0.14
gi|38787941 tensin like C1 domain containing phosphatase isoform... 33 0.14
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 33 0.18
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 33 0.18
gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo... 33 0.18
gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo... 33 0.18
gi|239753216 PREDICTED: similar to immunoglobulin superfamily, m... 32 0.23
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 32 0.23
gi|222136641 NIMA-related kinase 9 [Homo sapiens] 31 0.68
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens] 30 0.89
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ... 30 0.89
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ... 30 0.89
gi|169171612 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|169172017 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|169171011 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239509113 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 30 1.5
gi|31542255 hypothetical protein LOC140706 [Homo sapiens] 30 1.5
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 29 2.0
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 29 2.0
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 29 2.6
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ... 29 2.6
>gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo
sapiens]
Length = 183
Score = 383 bits (983), Expect = e-107
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MWVMALVLVVSSLQYWRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREER 60
MWVMALVLVVSSLQYWRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREER
Sbjct: 1 MWVMALVLVVSSLQYWRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREER 60
Query: 61 KRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYS 120
KRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYS
Sbjct: 61 KRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYS 120
Query: 121 GDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTFGVWADSVGFSS 180
GDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTFGVWADSVGFSS
Sbjct: 121 GDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTFGVWADSVGFSS 180
Query: 181 LQL 183
LQL
Sbjct: 181 LQL 183
>gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo
sapiens]
Length = 183
Score = 383 bits (983), Expect = e-107
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MWVMALVLVVSSLQYWRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREER 60
MWVMALVLVVSSLQYWRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREER
Sbjct: 1 MWVMALVLVVSSLQYWRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREER 60
Query: 61 KRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYS 120
KRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYS
Sbjct: 61 KRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYS 120
Query: 121 GDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTFGVWADSVGFSS 180
GDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTFGVWADSVGFSS
Sbjct: 121 GDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTFGVWADSVGFSS 180
Query: 181 LQL 183
LQL
Sbjct: 181 LQL 183
>gi|239753266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 291 bits (745), Expect = 2e-79
Identities = 138/141 (97%), Positives = 138/141 (97%)
Query: 43 GGSSPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA 102
G PRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA
Sbjct: 54 GVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA 113
Query: 103 DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG 162
DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG
Sbjct: 114 DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG 173
Query: 163 TEGVLTFGVWADSVGFSSLQL 183
TEGVLTFGVWADSVGFSSLQL
Sbjct: 174 TEGVLTFGVWADSVGFSSLQL 194
>gi|169167080 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 14 QYWRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWWPQRDGT 73
Q W A PG P G GS P Q G +ER+RRRR QR +
Sbjct: 99 QVWWAGPGAAAAPP------------HPGSGSVPLSQALQSPGSQERRRRRR--RQRPAS 144
Query: 74 QPGSASWERSQVGRASTG 91
P A W R + GRA+ G
Sbjct: 145 SP-EAKWRRLEGGRAAAG 161
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 35.0 bits (79), Expect = 0.036
Identities = 37/121 (30%), Positives = 44/121 (36%), Gaps = 28/121 (23%)
Query: 39 RDDGGGSSPRVGGAQGEGREERKRRRRWWP---QRDGTQPGSASWERSQVGRASTGDALA 95
R +GGG R G R RRRRW P QR G +PG+ + + A+ ALA
Sbjct: 358 RGEGGGGGSRADVTAGRA---RPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALA 414
Query: 96 LCLGWVADSSWNASLTSSRLAWGYS--------GDTQCPGFRPPSPGSLWTQLP---PTS 144
A RL G S G P PP+P W P PT
Sbjct: 415 -----------GAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
Query: 145 L 145
L
Sbjct: 464 L 464
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 35.0 bits (79), Expect = 0.036
Identities = 37/121 (30%), Positives = 44/121 (36%), Gaps = 28/121 (23%)
Query: 39 RDDGGGSSPRVGGAQGEGREERKRRRRWWP---QRDGTQPGSASWERSQVGRASTGDALA 95
R +GGG R G R RRRRW P QR G +PG+ + + A+ ALA
Sbjct: 358 RGEGGGGGSRADVTAGRA---RPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALA 414
Query: 96 LCLGWVADSSWNASLTSSRLAWGYS--------GDTQCPGFRPPSPGSLWTQLP---PTS 144
A RL G S G P PP+P W P PT
Sbjct: 415 -----------GAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
Query: 145 L 145
L
Sbjct: 464 L 464
>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
sapiens]
Length = 782
Score = 34.7 bits (78), Expect = 0.047
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 40 DDGGGSSPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLG 99
+DG + P G A RE R+ + R W R G +PG V + LA C G
Sbjct: 4 EDGPAAGP--GAAAAAARERRREQLRQWGARAGAEPGPGERRARTVRFERAAEFLAACAG 61
Query: 100 WVADSS 105
D +
Sbjct: 62 GDLDEA 67
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 33.1 bits (74), Expect = 0.14
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 16 WRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWWPQRDGTQP 75
WR P G +P DA + G S+P + +G+E +R+ P TQ
Sbjct: 756 WREGPSGHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQR 815
Query: 76 GSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGS 135
S V +A TG A L G S L S ++ P F PPS S
Sbjct: 816 LSPGEALPPVSQAGTGKAPELPSG-----SGPEPLAPSPVS---------PTF-PPSSPS 860
Query: 136 LWTQLPPTSLRATGEQGQAVLAIQMPG 162
W Q + G ++ + +PG
Sbjct: 861 DWPQERSPGGHSDGASPRSPVPTTLPG 887
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 33.1 bits (74), Expect = 0.14
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 16 WRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWWPQRDGTQP 75
WR P G +P DA + G S+P + +G+E +R+ P TQ
Sbjct: 880 WREGPSGHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQR 939
Query: 76 GSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGS 135
S V +A TG A L G S L S ++ P F PPS S
Sbjct: 940 LSPGEALPPVSQAGTGKAPELPSG-----SGPEPLAPSPVS---------PTF-PPSSPS 984
Query: 136 LWTQLPPTSLRATGEQGQAVLAIQMPG 162
W Q + G ++ + +PG
Sbjct: 985 DWPQERSPGGHSDGASPRSPVPTTLPG 1011
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 33.1 bits (74), Expect = 0.14
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 16 WRAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWWPQRDGTQP 75
WR P G +P DA + G S+P + +G+E +R+ P TQ
Sbjct: 890 WREGPSGHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQR 949
Query: 76 GSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGS 135
S V +A TG A L G S L S ++ P F PPS S
Sbjct: 950 LSPGEALPPVSQAGTGKAPELPSG-----SGPEPLAPSPVS---------PTF-PPSSPS 994
Query: 136 LWTQLPPTSLRATGEQGQAVLAIQMPG 162
W Q + G ++ + +PG
Sbjct: 995 DWPQERSPGGHSDGASPRSPVPTTLPG 1021
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 58 EERKRRRRWWPQRDGTQP----GSASWERSQVGRASTGDALALCLGWVADSS-----WNA 108
E K + + W + P G W S GD GW ADS+ WN
Sbjct: 573 EPPKPKSQHWGDGQRSNPAWSAGGGDWADSSSVLGHLGDGKKNGSGWDADSNRSGSGWND 632
Query: 109 SLTSSRLAWGYSGDTQC-PGFR-----PPSPGSLWTQLP 141
+ S WG S +T+ PG P P W P
Sbjct: 633 TTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNWASKP 671
Score = 27.3 bits (59), Expect = 7.5
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 70 RDGTQPGSASWERSQVGRASTGDALALC---LGWVAD--SSWNASLTS------SRLAWG 118
++ T P S++W S G +S+ ++A G ++D S+W++ TS S W
Sbjct: 1440 QNATLPSSSAWPLSASGYSSSFSSIASAPSVAGKLSDIKSTWSSGPTSHTQASLSHELWK 1499
Query: 119 YSGDTQC-----PGFRPPSPGSLWTQLP 141
++ PG P P S W P
Sbjct: 1500 VPRNSTAPTRPPPGLTNPKPSSTWGASP 1527
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 58 EERKRRRRWWPQRDGTQP----GSASWERSQVGRASTGDALALCLGWVADSS-----WNA 108
E K + + W + P G W S GD GW ADS+ WN
Sbjct: 573 EPPKPKSQHWGDGQRSNPAWSAGGGDWADSSSVLGHLGDGKKNGSGWDADSNRSGSGWND 632
Query: 109 SLTSSRLAWGYSGDTQC-PGFR-----PPSPGSLWTQLP 141
+ S WG S +T+ PG P P W P
Sbjct: 633 TTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNWASKP 671
>gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo
sapiens]
Length = 1214
Score = 32.7 bits (73), Expect = 0.18
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 59 ERKRRRRWWPQRDGT-QPGSASWERSQVG 86
+ +R W RDGT QPGS+ WERS G
Sbjct: 474 QNRRSNIMWLDRDGTVQPGSSYWERSSFG 502
>gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo
sapiens]
Length = 1194
Score = 32.7 bits (73), Expect = 0.18
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 59 ERKRRRRWWPQRDGT-QPGSASWERSQVG 86
+ +R W RDGT QPGS+ WERS G
Sbjct: 454 QNRRSNIMWLDRDGTVQPGSSYWERSSFG 482
>gi|239753216 PREDICTED: similar to immunoglobulin superfamily,
member 3 [Homo sapiens]
Length = 376
Score = 32.3 bits (72), Expect = 0.23
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 59 ERKRRRR--WWPQRDGT-QPGSASWERSQVG 86
+R+ RR W RDGT QPGS+ WERS G
Sbjct: 285 DRQNRRSDIMWLDRDGTVQPGSSYWERSSFG 315
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 32.3 bits (72), Expect = 0.23
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 30 HSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRAS 89
++D+++L D S V +G + R P+RD P + R S
Sbjct: 137 NADSENLSPFDSIPDSELLVSPREGSSLHKLLTLSRTPPERDLITPVDPLGPSTGSSRGS 196
Query: 90 TGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATG 149
G ++L D SW+ S S + + + P +RPP W Q PP R+ G
Sbjct: 197 -GVEMSL-----PDPSWDFSPPS----FLETSSPKLPSWRPPRSRPRWGQSPPPQQRSDG 246
Query: 150 EQGQAV 155
E+ + V
Sbjct: 247 EEEEEV 252
>gi|222136641 NIMA-related kinase 9 [Homo sapiens]
Length = 979
Score = 30.8 bits (68), Expect = 0.68
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 29 LHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRA 88
+ S++ L + SSP GG G G EE ++ P G G+ +R G
Sbjct: 733 IRSNSSGLSIGTVFQSSSPGGGGGGGGGEEEDSQQESETPDPSGGFRGTMEADRGMEGLI 792
Query: 89 STGDAL-------ALCLGWVADSSWNA 108
S +A+ + C GW+ NA
Sbjct: 793 SPTEAMGNSNGASSSCPGWLRKELENA 819
>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 30.4 bits (67), Expect = 0.89
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 17 RAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWW 67
R A + +PL HS +Q ++ G GS PR+ E R WW
Sbjct: 206 RQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCREGDREASWW 256
>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
sapiens]
Length = 444
Score = 30.4 bits (67), Expect = 0.89
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 17 RAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWW 67
R A + +PL HS +Q ++ G GS PR+ E R WW
Sbjct: 206 RQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCREGDREASWW 256
>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
Length = 480
Score = 30.4 bits (67), Expect = 0.89
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 17 RAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWW 67
R A + +PL HS +Q ++ G GS PR+ E R WW
Sbjct: 206 RQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCREGDREASWW 256
>gi|169171612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
R WW R WE ++GRA G+AL +S A+L+ W G
Sbjct: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAALS----LWLSVGLG 81
Query: 124 QCPGFRPPSPGSLWTQLP 141
C F P LW +LP
Sbjct: 82 NC-SFHPYIQAELWKRLP 98
>gi|169172017 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
R WW R WE ++GRA G+AL +S A+L+ W G
Sbjct: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAALS----LWLSVGLG 81
Query: 124 QCPGFRPPSPGSLWTQLP 141
C F P LW +LP
Sbjct: 82 NC-SFHPYIQAELWKRLP 98
>gi|169171011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
R WW R WE ++GRA G+AL +S A+L+ W G
Sbjct: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAALS----LWLSVGLG 81
Query: 124 QCPGFRPPSPGSLWTQLP 141
C F P LW +LP
Sbjct: 82 NC-SFHPYIQAELWKRLP 98
>gi|239509113 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
R WW R WE ++GRA G+AL +S A+L+ W G
Sbjct: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAALS----LWLSVGLG 81
Query: 124 QCPGFRPPSPGSLWTQLP 141
C F P LW +LP
Sbjct: 82 NC-SFHPYIQAELWKRLP 98
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 29 LHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWWPQR----DGTQPGSASWER 82
+H A R GG + ++GG +G R+E + + WWP + DG + SA R
Sbjct: 142 VHLGAARASHRLAAGGHAVKIGGKKG--RKEARGTQGWWPPQSLTCDGRERTSAPLRR 197
>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
Length = 433
Score = 29.6 bits (65), Expect = 1.5
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 35 SLDMRDD--GGGSSPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGD 92
SLD R GG + R GG G E ++ R + Q S SWER G G
Sbjct: 200 SLDWRMGWGGGAAEARAGGGGGGSLERQRAGARASGSWERRQTFSGSWERRHGGGGGGGG 259
Query: 93 ALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSP 133
A SW S G S + + PG P P
Sbjct: 260 A------GKPGGSWERRQAGS--GGGGSWERRHPGPNPLDP 292
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 29.3 bits (64), Expect = 2.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 128 FRPPSPGSLWTQLPPTSLR 146
FRPPSPG+ +QLP T+ R
Sbjct: 234 FRPPSPGAARSQLPETARR 252
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 29.3 bits (64), Expect = 2.0
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 78 ASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPG-SL 136
A+W SQ + GD GW +S N TS WG + G S
Sbjct: 827 AAWNDSQKNKQGWGDGQKSSQGWSVSASDNWGETSRNNHWGEANKKSSSGGSDSDRSVSG 886
Query: 137 WTQLPPTS 144
W +L TS
Sbjct: 887 WNELGKTS 894
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 28.9 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 101 VADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQL 140
+A +W ++T RL+W G C RP S ++W +
Sbjct: 13 MAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHV 52
>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 28.9 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 101 VADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQL 140
+A +W ++T RL+W G C RP S ++W +
Sbjct: 13 MAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHV 52
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,748,583
Number of Sequences: 37866
Number of extensions: 439821
Number of successful extensions: 1968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1910
Number of HSP's gapped (non-prelim): 89
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.