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Search of human proteins with 239747741
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747741 PREDICTED: hypothetical protein XP_002348258 [Homo
sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747741 PREDICTED: hypothetical protein XP_002348258 [Homo ... 258 5e-70
gi|239741607 PREDICTED: hypothetical protein XP_002342248 [Homo ... 258 5e-70
gi|169210552 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan... 35 0.017
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 33 0.048
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 33 0.048
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 33 0.048
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 33 0.048
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 33 0.048
gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens] 33 0.048
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 33 0.048
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 33 0.063
gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens] 32 0.082
gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens] 32 0.082
gi|112382370 folate receptor 3 precursor [Homo sapiens] 32 0.11
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 32 0.14
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 31 0.18
gi|93277096 limbin [Homo sapiens] 31 0.18
gi|34098976 marapsin 2 [Homo sapiens] 31 0.18
gi|23111009 myogenic differentiation 1 [Homo sapiens] 31 0.24
gi|156151413 MUS81 endonuclease homolog [Homo sapiens] 31 0.24
gi|62241036 hypothetical protein LOC541565 [Homo sapiens] 31 0.24
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 30 0.41
>gi|239747741 PREDICTED: hypothetical protein XP_002348258 [Homo
sapiens]
Length = 118
Score = 258 bits (660), Expect = 5e-70
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60
MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR
Sbjct: 1 MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60
Query: 61 RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118
RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG
Sbjct: 61 RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118
>gi|239741607 PREDICTED: hypothetical protein XP_002342248 [Homo
sapiens]
Length = 118
Score = 258 bits (660), Expect = 5e-70
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60
MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR
Sbjct: 1 MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60
Query: 61 RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118
RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG
Sbjct: 61 RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118
>gi|169210552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 35.4 bits (80), Expect = 0.010
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 46 PQRKVPGGRPAPGRRRPWPENHHEAPPSPGDPGDCCLW---RKQRCCSW 91
P + GG +PG H P PG CCLW RK+ CC W
Sbjct: 14 PSSQDSGGGTSPGTLE---SREHRPPWMPGRRECCCLWTLRRKEHCCLW 59
>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
factor 4 [Homo sapiens]
Length = 368
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 9 HRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRRPWPENHH 68
H P T R + L + + +T G+ L PP+ P R PW
Sbjct: 138 HTPGTATHLRPLKVLTPDSENPPSPSQLTIGSSPLIPPRAACPAWSLQQVRCTPWTHPAA 197
Query: 69 EAPPSPGDP--------GDCCLWRKQRCCS 90
APP P P G C+ R Q+C S
Sbjct: 198 AAPPPPAQPSPSLWLELGPACV-RAQQCPS 226
>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 33.5 bits (75), Expect = 0.037
Identities = 37/122 (30%), Positives = 42/122 (34%), Gaps = 32/122 (26%)
Query: 2 EAGNLAAHRPSTQPGRR--GVSCLAQKHHPQRTQAVVTTGAEVLAP---------PQRKV 50
E L A RP+ PG R G A+ HP+R+ G P P R V
Sbjct: 148 EPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPV 207
Query: 51 PGGRPAPGRR-------------RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRN 97
GGR PG R RPW PP P R + CS RN
Sbjct: 208 LGGRSGPGDRSLRSAHLGGAGQGRPWTA---RPPPIPHTRP-----RPKCACSTPGTNRN 259
Query: 98 LG 99
LG
Sbjct: 260 LG 261
>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 33.1 bits (74), Expect = 0.048
Identities = 37/122 (30%), Positives = 42/122 (34%), Gaps = 32/122 (26%)
Query: 2 EAGNLAAHRPSTQPGRR--GVSCLAQKHHPQRTQAVVTTGAEVLAP---------PQRKV 50
E L A RP+ PG R G A+ HP+R+ G P P R V
Sbjct: 148 EPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPV 207
Query: 51 PGGRPAPGRR-------------RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRN 97
GGR PG R RPW PP P R + CS RN
Sbjct: 208 LGGRSGPGDRSLRSAHLGGAGQGRPWTA---RPPPIPHTRP-----RPKCACSAPGTNRN 259
Query: 98 LG 99
LG
Sbjct: 260 LG 261
>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 33.1 bits (74), Expect = 0.048
Identities = 37/122 (30%), Positives = 42/122 (34%), Gaps = 32/122 (26%)
Query: 2 EAGNLAAHRPSTQPGRR--GVSCLAQKHHPQRTQAVVTTGAEVLAP---------PQRKV 50
E L A RP+ PG R G A+ HP+R+ G P P R V
Sbjct: 148 EPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPV 207
Query: 51 PGGRPAPGRR-------------RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRN 97
GGR PG R RPW PP P R + CS RN
Sbjct: 208 LGGRSGPGDRSLRSAHLGGAGQGRPWTA---RPPPIPHTRP-----RPKCACSAPGTNRN 259
Query: 98 LG 99
LG
Sbjct: 260 LG 261
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 42 VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
VLA P +PGGR A GR RRP P+ APP P P
Sbjct: 74 VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 113
>gi|209954781 neurotrophic factor artemin isoform 1 precursor
[Homo sapiens]
Length = 220
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 42 VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
VLA P +PGGR A GR RRP P+ APP P P
Sbjct: 57 VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 96
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 42 VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
VLA P +PGGR A GR RRP P+ APP P P
Sbjct: 65 VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 104
>gi|209954776 neurotrophic factor artemin isoform 1 precursor
[Homo sapiens]
Length = 220
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 42 VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
VLA P +PGGR A GR RRP P+ APP P P
Sbjct: 57 VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 96
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 42 VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
VLA P +PGGR A GR RRP P+ APP P P
Sbjct: 65 VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 104
>gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]
Length = 949
Score = 33.1 bits (74), Expect = 0.048
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 51 PGGRPAPGRRRPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKR 110
PG P P R P PE APP P P N G+ + G+R
Sbjct: 433 PGRAPIPHRHYPAPEGPAPAPPGPLPPAP-----------------NSGTGPSGVAGGRR 475
Query: 111 DLSCEAAG 118
CEAAG
Sbjct: 476 LGKCEAAG 483
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 33.1 bits (74), Expect = 0.048
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 51 PGGRPAPGRRRPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKR 110
PG P P R P PE APP P P N G+ + G+R
Sbjct: 638 PGRAPIPHRHYPAPEGPAPAPPGPLPPAP-----------------NSGTGPSGVAGGRR 680
Query: 111 DLSCEAAG 118
CEAAG
Sbjct: 681 LGKCEAAG 688
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 32.7 bits (73), Expect = 0.063
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 45 PPQRKVPGGRPAPGRRR--PWPENHHEAPPSPGDPG 78
PP R GG P GR+ P+ + HH+ PP PG PG
Sbjct: 233 PPHRG--GGEPRGGRQHHPPYHQQHHQGPP-PGGPG 265
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 45 PPQRKVPGGRPAPGRRRPWPENHHEAPPSP 74
PP ++ P +P P + P P+ H + P P
Sbjct: 72 PPPQQPPPQQPPPHQPPPHPQPHQQQQPPP 101
>gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens]
Length = 275
Score = 32.3 bits (72), Expect = 0.082
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 51 PGGRPAPGRRRPWPENHHEAPPSPGDPGDCC 81
P PAP RRR P + E P GDPG CC
Sbjct: 157 PPQAPAP-RRRAGPFDDAEPEPDQGDPGACC 186
>gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens]
Length = 275
Score = 32.3 bits (72), Expect = 0.082
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 51 PGGRPAPGRRRPWPENHHEAPPSPGDPGDCC 81
P PAP RRR P + E P GDPG CC
Sbjct: 157 PPQAPAP-RRRAGPFDDAEPEPDQGDPGACC 186
>gi|112382370 folate receptor 3 precursor [Homo sapiens]
Length = 245
Score = 32.0 bits (71), Expect = 0.11
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 67 HHEAPPSPGDP--GDCCLWRKQRCCS 90
HH+ PSP D G C W+K CC+
Sbjct: 42 HHKTQPSPEDELYGQCSPWKKNACCT 67
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 44 APPQRKVPGGRPAPGRRRPWPENHHEAPPSPGDPGD 79
A P P P P + P P N APPS GDPG+
Sbjct: 1409 AQPPPPPPPPPPPPQQPLPPPPNLEPAPPSLGDPGE 1444
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 2 EAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRR 61
E G P +PG +G L + P GA P +R G R PG
Sbjct: 345 ERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGF-PGERGEKGDRGFPGTSL 403
Query: 62 PWPENHHEAPPSPGDPG 78
P P P PG PG
Sbjct: 404 PGPSGRDGLPGPPGSPG 420
>gi|93277096 limbin [Homo sapiens]
Length = 1308
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 19 GVSCLAQKHHPQRTQAVVTTGAEVLAPPQ---RKVPGGRPAPGRRRPWPENHHEAPPSPG 75
G CL P+ GA+ PQ R PG R PGR PE+ + P
Sbjct: 27 GRGCLGASSRPRWRPL----GAQPPRDPQVAPRSGPGLRIPPGRSGAGPESSTQDLP--- 79
Query: 76 DPGDCCLWRKQRCCSWK 92
C +W K CC +K
Sbjct: 80 ----CMIWPKVECCHFK 92
>gi|34098976 marapsin 2 [Homo sapiens]
Length = 326
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 27 HHPQRTQAVVTTGAEVLAPP--QRKVPGGRPAPGRRRPWPENHHEA 70
H Q + TG+ P + K+ GG PAP R+ PW + H A
Sbjct: 35 HRQPENQGISLTGSVACGRPSMEGKILGGVPAPERKWPWQVSVHYA 80
>gi|23111009 myogenic differentiation 1 [Homo sapiens]
Length = 320
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 55 PAPGRRRPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLS 113
PAPG R + H AP G C LW + C K + N + +T+ +R LS
Sbjct: 71 PAPGARE---DEHVRAPSGHHQAGRCLLWACKAC---KRKTTNADRRKAATMRERRRLS 123
>gi|156151413 MUS81 endonuclease homolog [Homo sapiens]
Length = 551
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 2 EAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRR 61
+AG ++ P+ G R + + + H T E+L +K P R APG R
Sbjct: 123 KAGGSGSYWPARHSGARVILLVLYREHLNPNGHHFLTKEELLQRCAQKSP--RVAPGSAR 180
Query: 62 PWP 64
PWP
Sbjct: 181 PWP 183
>gi|62241036 hypothetical protein LOC541565 [Homo sapiens]
Length = 365
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 11 PSTQPGRRGVS---CLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRRPWPENH 67
P PG RG L+Q H TGA+ +PP+ +VP P P +
Sbjct: 234 PLHTPGNRGQGPWELLSQTEH---------TGAKAASPPKVEVPSANPPRLPETPVEPTY 284
Query: 68 HEAPPSPGDPGDCCLWRK 85
H P S G D W K
Sbjct: 285 H-LPSSQGHKRDISHWDK 301
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 7 AAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVP--GGRPAPGRRRPWP 64
A RP + +R V A + P+R T G E + +R P RP P RRP P
Sbjct: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 7 AAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVP--GGRPAPGRRRPWP 64
A RP + +R V A + P+R T G E + +R P RP P RRP P
Sbjct: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 30.4 bits (67), Expect = 0.31
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 11 PSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVL-APPQRKVPGGRPAPGRRRPWPENHHE 69
P+ GRR + H +Q + A ++ P R P RPAP R P N H
Sbjct: 2 PNKASGRRQGRARGRPH----SQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHP 57
Query: 70 APPSP-GDPGDCCLWRKQRCCS 90
PP+ PG C + RC S
Sbjct: 58 PPPAARTHPGSC----RARCPS 75
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 7 AAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVP--GGRPAPGRRRPWP 64
A RP + +R V A + P+R T G E + +R P RP P RRP P
Sbjct: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 43 LAPPQRKVPGGRPAP--GRRRPWPENHH----EAPPSPG 75
+APP R P RP P G R P P APPSPG
Sbjct: 1153 VAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPG 1191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,590,417
Number of Sequences: 37866
Number of extensions: 398884
Number of successful extensions: 2374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 412
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.