Guide to the Human Genome
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Search of human proteins with 239747543

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo
sapiens]
         (80 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo ...   164   1e-41
gi|239754420 PREDICTED: hypothetical protein [Homo sapiens]           108   1e-24
gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo ...   108   1e-24
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]          33   0.064
gi|91208420 bassoon protein [Homo sapiens]                             32   0.11 
gi|169177385 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component...    30   0.42 
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              30   0.42 
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]          30   0.54 
gi|209364619 pregnancy upregulated non-ubiquitously expressed Ca...    29   0.71 
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    29   0.93 
gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo ...    28   1.2  
gi|169177307 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom...    28   1.2  
gi|153285461 fibroblast growth factor 2 [Homo sapiens]                 28   1.6  
gi|239756085 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|239750614 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo ...    28   1.6  
gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ...    28   1.6  
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]     28   1.6  
gi|154426272 hypothetical protein LOC54540 [Homo sapiens]              28   1.6  
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ...    28   2.1  
gi|239755362 PREDICTED: hypothetical protein [Homo sapiens]            28   2.1  
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ...    28   2.1  
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ...    28   2.1  
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]            28   2.1  
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ...    28   2.1  
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    28   2.1  
gi|73476377 LBXCOR1 homolog [Homo sapiens]                             28   2.1  

>gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo
          sapiens]
          Length = 80

 Score =  164 bits (415), Expect = 1e-41
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60
          MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA
Sbjct: 1  MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60

Query: 61 KPLTAQSPVVPAGRSEREEF 80
          KPLTAQSPVVPAGRSEREEF
Sbjct: 61 KPLTAQSPVVPAGRSEREEF 80


>gi|239754420 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 105

 Score =  108 bits (269), Expect = 1e-24
 Identities = 55/71 (77%), Positives = 58/71 (81%)

Query: 1  MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60
          MGLGA+EQGA LV EAR AQEPTE  EAQAW AAGP+ CPAGRQLRP EKLSTAAAGPGA
Sbjct: 12 MGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71

Query: 61 KPLTAQSPVVP 71
           PLTA+    P
Sbjct: 72 TPLTARGGGAP 82


>gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo
          sapiens]
          Length = 105

 Score =  108 bits (269), Expect = 1e-24
 Identities = 55/71 (77%), Positives = 58/71 (81%)

Query: 1  MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60
          MGLGA+EQGA LV EAR AQEPTE  EAQAW AAGP+ CPAGRQLRP EKLSTAAAGPGA
Sbjct: 12 MGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71

Query: 61 KPLTAQSPVVP 71
           PLTA+    P
Sbjct: 72 TPLTARGGGAP 82


>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 42  GRQLRPGEKLSTAAAGPGAKPLTAQSPVV 70
           G Q RP  + S   AGP A+PL +Q+P+V
Sbjct: 95  GEQYRPSNEQSQVTAGPPARPLASQAPIV 123


>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
          Length = 379

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 22  PTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAGRSE 76
           P  G E Q   AA P   P+ R   P   LST  AGPG    TA  P +P   +E
Sbjct: 160 PAPGLEPQRGPAASPPQEPSSRPPSPPAGLSTEPAGPG----TAPRPFLPGQPAE 210


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/64 (31%), Positives = 27/64 (42%)

Query: 14   GEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAG 73
            G    A+ P +G   QA  A GP         RPG      A  PGA   +  S ++P G
Sbjct: 3844 GSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESVFSKILPGG 3903

Query: 74   RSER 77
             +E+
Sbjct: 3904 AAEQ 3907



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 34  AGPKLCPA-GRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAGRSERE 78
           +GP   PA G +  PG ++   + GPGA P T  +     GR+E +
Sbjct: 402 SGPGPGPAPGAKTEPGARMGPGS-GPGALPKTGGTTSPKHGRAEHQ 446


>gi|169177385 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 223

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 2   GLGAVEQGATLVG-EAREAQEPTEGAEAQAWWA------AGPKLCPAGRQLRPGEKLSTA 54
           G+G   +G  L G +AR   +P         WA      A PKL  A     PG  ++ A
Sbjct: 81  GIGGAGRGQGLAGSQARSTCDPEAAQAMLTTWAPSYRRQATPKLAGAPSLADPGLDVAVA 140

Query: 55  AAGPG 59
           AA PG
Sbjct: 141 AAKPG 145


>gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component of
           2-oxo-glutarate complex) [Homo sapiens]
          Length = 453

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 4   GAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPL 63
           G VE G  L    +    P +   A+A  AA PK  P           + AA  P A P+
Sbjct: 132 GKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEP-----------TAAAVPPPAAPI 180

Query: 64  TAQSPVVPA 72
             Q P VP+
Sbjct: 181 PTQMPPVPS 189


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 2   GLGAVEQGATLVGEAR-------EAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTA 54
           GLG  EQG  L   AR       ++   T   E  + W   P+ CP   +    ++ ++ 
Sbjct: 511 GLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQEASE 570

Query: 55  AAGPGAKPLTAQS 67
              P +  L+  S
Sbjct: 571 GGDPASPALSLSS 583


>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
          Length = 845

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 4   GAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPL 63
           G      +   E     EP++G    +         P+G  LRP    ST    PGA+  
Sbjct: 469 GTTGPWTSTTSEVPRPPEPSQGPSTTSSGGGTGPHPPSGTTLRPPTS-STPGGPPGAENS 527

Query: 64  TAQSPVVPAG 73
           T+  P  P G
Sbjct: 528 TSHQPATPGG 537


>gi|209364619 pregnancy upregulated non-ubiquitously expressed CaM
          kinase isoform a [Homo sapiens]
          Length = 426

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 32 WAAGPKLCPAGRQLRPGEKLSTAAAGPGAKP 62
          W  GP   PAG QLR   + S+   G G  P
Sbjct: 43 WCKGPGAGPAGPQLREAARASSGLGGGGRHP 73


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 16  AREAQEPTEGAE-------AQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSP 68
           A + + P EG+        A A  AAGP+  PAG     G     A AGPG  P     P
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182


>gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo
           sapiens]
          Length = 411

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 1   MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60
           +G+G  E G +L G A  A+            A   +LC A  Q  P    +  A  P A
Sbjct: 127 VGVGDPEAGGSLHGCAGSARAAVGAVSGPDLAARSSRLCRANYQAPP--PTAYHAPPPTA 184

Query: 61  KPLTAQSPVVPA 72
           +P +A  P  P+
Sbjct: 185 QPTSAAHPAAPS 196


>gi|169177307 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 223

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 2   GLGAVEQGATLVG-EAREAQEPTEGAEAQAWWA------AGPKLCPAGRQLRPGEKLSTA 54
           G+G   +G  L G +AR   +P         WA      A PKL  A     PG  ++ A
Sbjct: 81  GIGGAGRGQGLGGSQARGTCDPEAAQAMLTTWAPSYRRQATPKLAGAPSLADPGMDVAVA 140

Query: 55  AAGPG 59
           AA PG
Sbjct: 141 AAKPG 145


>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
           sapiens]
          Length = 999

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 2   GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61
           G G  EQG+TL    RE   P     A A  AAG    P GR        S+A++   + 
Sbjct: 111 GAGRAEQGSTLRRRIREHLLPAVKGPAAASGAAG-GTPPGGRSPDSAPSSSSASSSLSSS 169

Query: 62  PLTAQSPVVPAGRSEREE 79
           P   Q P  P G   R+E
Sbjct: 170 P---QPP--PRGDRARDE 182


>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
          Length = 288

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 2   GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAG 57
           G G    G  L G  R       G   +    A P+  PA R  RPG    T AAG
Sbjct: 83  GRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPG-PAGTMAAG 137


>gi|239756085 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 22  PTEGAEAQAWWAAGPKLCP--AGRQLRPGEKLSTAAAGPGAKPLTAQSP 68
           P  G  +     AG  L P  + R  + G + S+ +AGPGA P +   P
Sbjct: 104 PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152


>gi|239750614 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 22  PTEGAEAQAWWAAGPKLCP--AGRQLRPGEKLSTAAAGPGAKPLTAQSP 68
           P  G  +     AG  L P  + R  + G + S+ +AGPGA P +   P
Sbjct: 104 PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152


>gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo
           sapiens]
          Length = 165

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 22  PTEGAEAQAWWAAGPKLCP--AGRQLRPGEKLSTAAAGPGAKPLTAQSP 68
           P  G  +     AG  L P  + R  + G + S+ +AGPGA P +   P
Sbjct: 104 PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152


>gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
           precursor [Homo sapiens]
          Length = 539

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 15  EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSP 68
           + RE   P    E +A W A     P G    P E L  +AA  G   L A SP
Sbjct: 58  DTREEAGPPAAGEDEASWTA-----PGGELAGPEEVLQESAAVTGTAWLEADSP 106


>gi|22547197 zinc finger protein of the cerebellum 2 [Homo
          sapiens]
          Length = 532

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 37 KLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPA 72
          KL P   +L PG+  +  + GPGA P +A +    A
Sbjct: 61 KLNPGAHELSPGQSSAFTSQGPGAYPGSAAAAAAAA 96


>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
          Length = 789

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 14/75 (18%)

Query: 13  VGEAREAQEPTEGAEAQAWWAAGPKL----------CPAGRQLRPGEKLSTAAAGPGAKP 62
           VG   EA E + G+     WA  PK            P   + RP E+ S    GP A+P
Sbjct: 650 VGSCAEAGEGSRGSRPGPGWAGSPKTEKEKGSSWRNWPGEAKARPQEQESVQPPGP-ARP 708

Query: 63  LTAQSPVVPAGRSER 77
              QS     GRS R
Sbjct: 709 ---QSLPQGKGRSRR 720


>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
           (predicted) [Homo sapiens]
          Length = 290

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 15  EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61
           EA   + P E  E +A  ++G +  PA   L+PG   S A+ GPG +
Sbjct: 98  EAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPG---SPASPGPGRR 141


>gi|239755362 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 112

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 1  MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGP 58
          MG G +EQ A LV ++   QEP     +       P L P G      +K     +GP
Sbjct: 25 MGPGVLEQRAALVRDSTAVQEPRRRGGSGMACCRSPAL-PHGEVAEARQKFQREVSGP 81


>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
           (predicted) [Homo sapiens]
          Length = 290

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 15  EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61
           EA   + P E  E +A  ++G +  PA   L+PG   S A+ GPG +
Sbjct: 98  EAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPG---SPASPGPGRR 141


>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
           sapiens]
          Length = 594

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/45 (40%), Positives = 20/45 (44%)

Query: 2   GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLR 46
           GLG   Q    VGEAREA    E A       A  +L  A  Q+R
Sbjct: 353 GLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMR 397


>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 290

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 15  EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61
           EA   + P E  E +A  ++G +  PA   L+PG   S A+ GPG +
Sbjct: 98  EAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPG---SPASPGPGRR 141


>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
           sapiens]
          Length = 594

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/45 (40%), Positives = 20/45 (44%)

Query: 2   GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLR 46
           GLG   Q    VGEAREA    E A       A  +L  A  Q+R
Sbjct: 353 GLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMR 397


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
          Length = 1747

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 38   LCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAGRSE 76
            L P   +   G  L+T  AGPG  P T  SP      SE
Sbjct: 1322 LVPPPEEFANGVLLATPLAGPGPSPTTVPSPASGKPSSE 1360


>gi|73476377 LBXCOR1 homolog [Homo sapiens]
          Length = 921

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 7   EQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAG-PGAKPLTA 65
           E  A   G   + ++PT    A +  A GP   P G   RP  +L    AG P    L A
Sbjct: 635 EPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAA 694

Query: 66  QSPVVPAGRS 75
           +  V    RS
Sbjct: 695 EDLVRRPERS 704


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.127    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,734,666
Number of Sequences: 37866
Number of extensions: 177895
Number of successful extensions: 865
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 106
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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