Search of human proteins with 239747354

Search of human proteins with 239747354

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747354 PREDICTED: hypothetical protein XP_002346430 [Homo
sapiens]
         (324 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752808 PREDICTED: similar to c-jun [Homo sapiens]               656   0.0  
gi|239747354 PREDICTED: hypothetical protein XP_002346430 [Homo ...   656   0.0  
gi|239741179 PREDICTED: hypothetical protein XP_002342128 [Homo ...   656   0.0  
gi|239753040 PREDICTED: hypothetical protein XP_002345331 [Homo ...    35   0.069
gi|239747598 PREDICTED: hypothetical protein XP_002347782 [Homo ...    35   0.069
gi|239741463 PREDICTED: hypothetical protein XP_002342210 [Homo ...    35   0.069
gi|116812636 O-sialoglycoprotein endopeptidase-like 1 [Homo sapi...    33   0.34 
gi|196115153 CDKN1A interacting zinc finger protein 1 isoform 3 ...    32   0.59 
gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1 ...    32   0.59 
gi|196115141 CDKN1A interacting zinc finger protein 1 isoform 2 ...    32   0.59 
gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1 [...    32   0.59 
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]         32   1.0  
gi|157168329 formin 1 [Homo sapiens]                                   31   1.3  
gi|24497609 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|24497607 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|24497605 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|24497603 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]    31   1.7  
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]    31   1.7  
gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]            30   2.9  
gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo ...    30   2.9  
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]        30   3.8  
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]        30   3.8  
gi|148839382 ring finger protein 169 [Homo sapiens]                    30   3.8  
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ...    29   5.0  
gi|187960059 syndecan 3 [Homo sapiens]                                 29   6.5  
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom...    29   6.5  
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]            28   8.5  
gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo sap...    28   8.5  
gi|81174549 hypothetical protein LOC84792 [Homo sapiens]               28   8.5  

>gi|239752808 PREDICTED: similar to c-jun [Homo sapiens]
          Length = 324

 Score =  656 bits (1692), Expect = 0.0
 Identities = 324/324 (100%), Positives = 324/324 (100%)

Query: 1   MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN 60
           MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN
Sbjct: 1   MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN 60

Query: 61  LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF 120
           LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF
Sbjct: 61  LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF 120

Query: 121 SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ 180
           SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ
Sbjct: 121 SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ 180

Query: 181 VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP 240
           VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP
Sbjct: 181 VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP 240

Query: 241 SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR 300
           SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR
Sbjct: 241 SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR 300

Query: 301 CGFRLPTGSARFRVMLCFRILGLL 324
           CGFRLPTGSARFRVMLCFRILGLL
Sbjct: 301 CGFRLPTGSARFRVMLCFRILGLL 324


>gi|239747354 PREDICTED: hypothetical protein XP_002346430 [Homo
           sapiens]
          Length = 324

 Score =  656 bits (1692), Expect = 0.0
 Identities = 324/324 (100%), Positives = 324/324 (100%)

Query: 1   MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN 60
           MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN
Sbjct: 1   MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN 60

Query: 61  LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF 120
           LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF
Sbjct: 61  LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF 120

Query: 121 SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ 180
           SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ
Sbjct: 121 SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ 180

Query: 181 VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP 240
           VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP
Sbjct: 181 VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP 240

Query: 241 SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR 300
           SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR
Sbjct: 241 SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR 300

Query: 301 CGFRLPTGSARFRVMLCFRILGLL 324
           CGFRLPTGSARFRVMLCFRILGLL
Sbjct: 301 CGFRLPTGSARFRVMLCFRILGLL 324


>gi|239741179 PREDICTED: hypothetical protein XP_002342128 [Homo
           sapiens]
          Length = 324

 Score =  656 bits (1692), Expect = 0.0
 Identities = 324/324 (100%), Positives = 324/324 (100%)

Query: 1   MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN 60
           MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN
Sbjct: 1   MQFLVNVNEKSNVPFARGQPVRKAGQPAGGRSLAPRQGRARQVLPTRAHWGRRQDATQSN 60

Query: 61  LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF 120
           LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF
Sbjct: 61  LDTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRGRQLRVLSFQGFHFFLQPGDSLQLPF 120

Query: 121 SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ 180
           SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ
Sbjct: 121 SALGGSDAVPHALPLRLDPLLGLHVDGGQGRCLAGHLGHCLRLLLQGLQPRVLHGHLLGQ 180

Query: 181 VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP 240
           VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP
Sbjct: 181 VVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKP 240

Query: 241 SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR 300
           SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR
Sbjct: 241 SAKPSCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGEVRRSEFLARR 300

Query: 301 CGFRLPTGSARFRVMLCFRILGLL 324
           CGFRLPTGSARFRVMLCFRILGLL
Sbjct: 301 CGFRLPTGSARFRVMLCFRILGLL 324


>gi|239753040 PREDICTED: hypothetical protein XP_002345331 [Homo
           sapiens]
          Length = 244

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 170 PRVLHGHLLGQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFW 229
           PR+L    L  ++ RLL LL L L PP PL P   A   A M AP+TG      L +V W
Sbjct: 77  PRLLAQPALVLLLLRLLALLKLKLLPPPPLLPPLPALL-AVMRAPVTG-----ALITVVW 130

Query: 230 LCSSARARTKPSAK 243
                R R+ PS +
Sbjct: 131 ----CRERSLPSVR 140


>gi|239747598 PREDICTED: hypothetical protein XP_002347782 [Homo
           sapiens]
          Length = 244

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 170 PRVLHGHLLGQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFW 229
           PR+L    L  ++ RLL LL L L PP PL P   A   A M AP+TG      L +V W
Sbjct: 77  PRLLAQPALVLLLLRLLALLKLKLLPPPPLLPPLPALL-AVMRAPVTG-----ALITVVW 130

Query: 230 LCSSARARTKPSAK 243
                R R+ PS +
Sbjct: 131 ----CRERSLPSVR 140


>gi|239741463 PREDICTED: hypothetical protein XP_002342210 [Homo
           sapiens]
          Length = 244

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 170 PRVLHGHLLGQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFW 229
           PR+L    L  ++ RLL LL L L PP PL P   A   A M AP+TG      L +V W
Sbjct: 77  PRLLAQPALVLLLLRLLALLKLKLLPPPPLLPPLPALL-AVMRAPVTG-----ALITVVW 130

Query: 230 LCSSARARTKPSAK 243
                R R+ PS +
Sbjct: 131 ----CRERSLPSVR 140


>gi|116812636 O-sialoglycoprotein endopeptidase-like 1 [Homo
           sapiens]
          Length = 414

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 25/97 (25%)

Query: 105 GFHFFLQPGDSLQLPFSALGGSDAVPHALPLRLD-----PLLGLHVDGGQGRCLAGHLGH 159
           G  F LQ    L+ PF  +   +A  HAL +RL      P L L + GG          H
Sbjct: 127 GLSFSLQLVGQLKKPFIPIHHMEA--HALTIRLTNKVEFPFLVLLISGG----------H 174

Query: 160 CLRLLLQGLQPRVL--------HGHLLGQVVRRLLLL 188
           CL  L+QG+   +L         G +L +V RRL L+
Sbjct: 175 CLLALVQGVSDFLLLGKSLDIAPGDMLDKVARRLSLI 211


>gi|196115153 CDKN1A interacting zinc finger protein 1 isoform 3
           [Homo sapiens]
          Length = 837

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 163 LLLQGLQPRVLHGHLLGQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTG 217
           L LQG     L   L G +++R LLL  L       +PPAT  TAG TMP    G
Sbjct: 69  LNLQGTNSASL---LNGSMLQRALLLQQLQGLDQFAMPPATYDTAGLTMPTATLG 120


>gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1
           [Homo sapiens]
          Length = 898

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 163 LLLQGLQPRVLHGHLLGQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTG 217
           L LQG     L   L G +++R LLL  L       +PPAT  TAG TMP    G
Sbjct: 69  LNLQGTNSASL---LNGSMLQRALLLQQLQGLDQFAMPPATYDTAGLTMPTATLG 120


>gi|196115141 CDKN1A interacting zinc finger protein 1 isoform 2
           [Homo sapiens]
          Length = 842

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 163 LLLQGLQPRVLHGHLLGQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTG 217
           L LQG     L   L G +++R LLL  L       +PPAT  TAG TMP    G
Sbjct: 69  LNLQGTNSASL---LNGSMLQRALLLQQLQGLDQFAMPPATYDTAGLTMPTATLG 120


>gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1
           [Homo sapiens]
          Length = 898

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 163 LLLQGLQPRVLHGHLLGQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTG 217
           L LQG     L   L G +++R LLL  L       +PPAT  TAG TMP    G
Sbjct: 69  LNLQGTNSASL---LNGSMLQRALLLQQLQGLDQFAMPPATYDTAGLTMPTATLG 120


>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
          Length = 888

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 193 LKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSAR-ARTKPSAKPS 245
           L PPLP PP   AT  A+ P   T  AA   +G      S+ + A  +P  +PS
Sbjct: 395 LNPPLPPPPLLAATVLASTPPGATAAAAAAGMGPRPMAGSTDQIAHLRPQTRPS 448


>gi|157168329 formin 1 [Homo sapiens]
          Length = 1196

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 195 PPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWL-CSSARARTKPSAKPSC 246
           PPLP  PA     G     P  G A     G  F L  SS++   KP+ +PSC
Sbjct: 705 PPLPNSPAPPNPGGPPPAPPPPGLAPPPPPGLFFGLGSSSSQCPRKPAIEPSC 757


>gi|24497609 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 197 LPLPPATEA--TAGATMPAPLTGCAADVTLG-SVFWLCSSARARTKPSAKPSCSSVTFLG 253
           LP  PAT A  TAGAT PA  T  A   + G S+F   ++A   +  +    C+ VT  G
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLSLCTPVTTAG 247


>gi|24497607 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 197 LPLPPATEA--TAGATMPAPLTGCAADVTLG-SVFWLCSSARARTKPSAKPSCSSVTFLG 253
           LP  PAT A  TAGAT PA  T  A   + G S+F   ++A   +  +    C+ VT  G
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLSLCTPVTTAG 247


>gi|24497605 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 197 LPLPPATEA--TAGATMPAPLTGCAADVTLG-SVFWLCSSARARTKPSAKPSCSSVTFLG 253
           LP  PAT A  TAGAT PA  T  A   + G S+F   ++A   +  +    C+ VT  G
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLSLCTPVTTAG 247


>gi|24497603 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 197 LPLPPATEA--TAGATMPAPLTGCAADVTLG-SVFWLCSSARARTKPSAKPSCSSVTFLG 253
           LP  PAT A  TAGAT PA  T  A   + G S+F   ++A   +  +    C+ VT  G
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLSLCTPVTTAG 247


>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 191 LALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKPSAKPSCSS 248
           L    PLPLPPAT    G   P P T  AA  +  S     SS+ + +  SA  S SS
Sbjct: 59  LLTSAPLPLPPAT----GGAAPNPATTTAASSSSSS-----SSSSSSSSSSASSSSSS 107


>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 191 LALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKPSAKPSCSS 248
           L    PLPLPPAT    G   P P T  AA  +  S     SS+ + +  SA  S SS
Sbjct: 59  LLTSAPLPLPPAT----GGAAPNPATTTAASSSSSS-----SSSSSSSSSSASSSSSS 107


>gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 235

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 188 LLGLALKPPLPLPPATEATAGATMPA------PLTGCAADVTLGSVFWLCSSARARTKPS 241
           L GL   PP    P+  A AG           P+     D  LG    LCSSA A  +PS
Sbjct: 156 LRGLGPSPPRAARPSVPAAAGCGWAGSRDSGRPVPSLPVDCGLGPEALLCSSAPAARRPS 215


>gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo
           sapiens]
          Length = 235

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 188 LLGLALKPPLPLPPATEATAGATMPA------PLTGCAADVTLGSVFWLCSSARARTKPS 241
           L GL   PP    P+  A AG           P+     D  LG    LCSSA A  +PS
Sbjct: 156 LRGLGPSPPRAARPSVPAAAGCGWAGSRDSGRPVPSLPVDCGLGPEALLCSSAPAARRPS 215


>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
          Length = 930

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 52  RRQDATQSNL---DTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRG-RQLRVLSFQGFH 107
           R  +A   N+   DT    SR  L S   +L+ SQ      +   +G R L  LS  G  
Sbjct: 184 RAMNAANLNIPPSDTRSLISRESLASTTLSLTESQSASSMKQEWSQGYRALPSLSNHGSQ 243

Query: 108 FFLQPGDSLQLPFSALGGSDAVPHALP 134
             L  GD L LP      S++V ++LP
Sbjct: 244 NGLDLGDLLSLPPGTSMSSNSVSNSLP 270


>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
          Length = 775

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 52  RRQDATQSNL---DTLGFSSRTLLFSLRRNLSSSQLCHLFPEHVGRG-RQLRVLSFQGFH 107
           R  +A   N+   DT    SR  L S   +L+ SQ      +   +G R L  LS  G  
Sbjct: 29  RAMNAANLNIPPSDTRSLISRESLASTTLSLTESQSASSMKQEWSQGYRALPSLSNHGSQ 88

Query: 108 FFLQPGDSLQLPFSALGGSDAVPHALP 134
             L  GD L LP      S++V ++LP
Sbjct: 89  NGLDLGDLLSLPPGTSMSSNSVSNSLP 115


>gi|148839382 ring finger protein 169 [Homo sapiens]
          Length = 708

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 38/127 (29%), Positives = 45/127 (35%), Gaps = 24/127 (18%)

Query: 185 LLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKPSAKP 244
           LL+L    L+PPLP  P     AG   P    G AA +  G    LC     R   +A P
Sbjct: 47  LLVLSPPLLQPPLPPRPEESGCAGCLEP---PGEAAALPCGHS--LCRGCAQRAADAAGP 101

Query: 245 SCSSVTFLGHRNWVGVGVVVMCPLLDWIIRRSSSGDASLSSPTSGE-VRRSEFLARRCGF 303
            C      G   W                RR +  D    S   GE  RRS+    RC  
Sbjct: 102 GCPRCRARG-PGWA---------------RRRARDDGQADSEVLGECARRSQ--PERCRP 143

Query: 304 RLPTGSA 310
           R   G+A
Sbjct: 144 RRDGGAA 150


>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
           sapiens]
          Length = 138

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 179 GQVVRRLLLLLGLALKPPLPLPPATEATAGATMPAPLTGCAADVTL--GSVFWLCSSARA 236
           G+ + R   L   +L PPLP  P  E  A   +PA    C+  + L  G +FW     R+
Sbjct: 69  GEALGRQGPLRSSSLLPPLPTWPGREGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRS 128

Query: 237 RTKPSAKPS 245
                  PS
Sbjct: 129 PFPGPGTPS 137


>gi|187960059 syndecan 3 [Homo sapiens]
          Length = 442

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 197 LPLPPATEATAGAT---MPAPLTGCAADVTLGSVFWLCSSARARTKPSAKPSCSSVTFLG 253
           LPLP  T ATA AT    P+P T  A   T      L S+A +R +   +P+ +    + 
Sbjct: 212 LPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIP 271

Query: 254 HRNWVGVGVVVMCP 267
            R+ + +G     P
Sbjct: 272 ERSTLPLGTTAPGP 285


>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
          sapiens]
          Length = 2063

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 16 ARGQPVRKAGQPAGGRSLAPRQGR-ARQVLPTRAHWGRRQDA 56
          ARGQP R+  + A G   AP Q R  R + P+     RR DA
Sbjct: 50 ARGQPSRRVSKLASGPLAAPAQPRPLRSLSPSVRQLSRRFDA 91


>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 370

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 22  RKAGQPAGGRSLAPRQGRARQVLPTRAHWGRR 53
           R  G   G R LAPR GR RQ    R  W RR
Sbjct: 306 RSPGARRGARELAPRAGRRRQP-SGRTSWRRR 336


>gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo
           sapiens]
          Length = 400

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 196 PLPLPPATEATAGATMPAPLTGCAADVTLGSVFWLCSSARARTKPSAKPSCSS 248
           P PLPP          P+PL   A D        + S  +AR K  A P+CS+
Sbjct: 7   PRPLPPVVLMLLLLLPPSPLPLAAGDPLPTESRLMNSCLQARRKCQADPTCSA 59


>gi|81174549 hypothetical protein LOC84792 [Homo sapiens]
          Length = 259

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 236 ARTKPSAKPSCSSVTFLGHRNWVGVG 261
           A T+  A+ SCS V  LG R+W+G G
Sbjct: 109 APTECFARVSCSGVEALGRRDWLGGG 134


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,412,853
Number of Sequences: 37866
Number of extensions: 654382
Number of successful extensions: 3338
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3319
Number of HSP's gapped (non-prelim): 46
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.