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Search of human proteins with 239747314
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747314 PREDICTED: hypothetical protein XP_002346438 [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752754 PREDICTED: hypothetical protein [Homo sapiens] 257 1e-69
gi|239747314 PREDICTED: hypothetical protein XP_002346438 [Homo ... 257 1e-69
gi|239741136 PREDICTED: hypothetical protein XP_002342134 [Homo ... 257 1e-69
gi|239754026 PREDICTED: hypothetical protein [Homo sapiens] 33 0.050
gi|239748557 PREDICTED: hypothetical protein XP_002346722 [Homo ... 33 0.050
gi|239742540 PREDICTED: hypothetical protein XP_002342571 [Homo ... 33 0.050
gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens] 32 0.085
gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens] 32 0.085
gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens] 32 0.085
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 32 0.085
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 32 0.11
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 30 0.32
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 0.32
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 30 0.42
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 30 0.42
gi|38788219 zinc finger protein 428 [Homo sapiens] 30 0.55
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 30 0.55
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 30 0.55
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 30 0.55
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|46094051 TSPY-like 4 [Homo sapiens] 30 0.55
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 30 0.55
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 29 0.72
>gi|239752754 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 257 bits (657), Expect = 1e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR 60
MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR
Sbjct: 1 MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR 60
Query: 61 PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV 119
PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV
Sbjct: 61 PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV 119
>gi|239747314 PREDICTED: hypothetical protein XP_002346438 [Homo
sapiens]
Length = 119
Score = 257 bits (657), Expect = 1e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR 60
MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR
Sbjct: 1 MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR 60
Query: 61 PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV 119
PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV
Sbjct: 61 PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV 119
>gi|239741136 PREDICTED: hypothetical protein XP_002342134 [Homo
sapiens]
Length = 119
Score = 257 bits (657), Expect = 1e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR 60
MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR
Sbjct: 1 MDGDVEMLHAGIQGVCSHRDGDRLPNTQRLPLLYCHNINFFILSSRLGSRTRSRPGSWVR 60
Query: 61 PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV 119
PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV
Sbjct: 61 PADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTCSHGV 119
>gi|239754026 PREDICTED: hypothetical protein [Homo sapiens]
Length = 422
Score = 33.1 bits (74), Expect = 0.050
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 56 GSWVRPADRGRRAPGCRLRGWECSPGR 82
GS P + R +P R RGWEC PGR
Sbjct: 153 GSLTEPKEPRRSSPPPRERGWECRPGR 179
>gi|239748557 PREDICTED: hypothetical protein XP_002346722 [Homo
sapiens]
Length = 422
Score = 33.1 bits (74), Expect = 0.050
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 56 GSWVRPADRGRRAPGCRLRGWECSPGR 82
GS P + R +P R RGWEC PGR
Sbjct: 153 GSLTEPKEPRRSSPPPRERGWECRPGR 179
>gi|239742540 PREDICTED: hypothetical protein XP_002342571 [Homo
sapiens]
Length = 422
Score = 33.1 bits (74), Expect = 0.050
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 56 GSWVRPADRGRRAPGCRLRGWECSPGR 82
GS P + R +P R RGWEC PGR
Sbjct: 153 GSLTEPKEPRRSSPPPRERGWECRPGR 179
>gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens]
Length = 278
Score = 32.3 bits (72), Expect = 0.085
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 43 LSSRLGSRTRSRPGSWVRPADRGRRAPGCRLRGWECSPGR----RTPWAGSPGARQERAG 98
LS R GS P S + G A + CSPG R ++G PG+RQ G
Sbjct: 128 LSPRAGSPFSPPPSS---SSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLG 184
Query: 99 RSQLS-----PAVPGPRS 111
R+ S P PGPRS
Sbjct: 185 RAGDSAVLVLPPSPGPRS 202
>gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens]
Length = 366
Score = 32.3 bits (72), Expect = 0.085
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 43 LSSRLGSRTRSRPGSWVRPADRGRRAPGCRLRGWECSPGR----RTPWAGSPGARQERAG 98
LS R GS P S + G A + CSPG R ++G PG+RQ G
Sbjct: 128 LSPRAGSPFSPPPSS---SSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLG 184
Query: 99 RSQLS-----PAVPGPRS 111
R+ S P PGPRS
Sbjct: 185 RAGDSAVLVLPPSPGPRS 202
>gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens]
Length = 352
Score = 32.3 bits (72), Expect = 0.085
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 43 LSSRLGSRTRSRPGSWVRPADRGRRAPGCRLRGWECSPGR----RTPWAGSPGARQERAG 98
LS R GS P S + G A + CSPG R ++G PG+RQ G
Sbjct: 128 LSPRAGSPFSPPPSS---SSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLG 184
Query: 99 RSQLS-----PAVPGPRS 111
R+ S P PGPRS
Sbjct: 185 RAGDSAVLVLPPSPGPRS 202
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 32.3 bits (72), Expect = 0.085
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 53 SRPGSWVRPADRGRRAPGCRLRGWEC----SPGR---RTPWAGSPGARQERAGRSQLSPA 105
S P S + A R+P R +G + SPGR +PWA P + G + A
Sbjct: 2 SGPPSAPQGALAAPRSPAVRRKGLQAPSWGSPGRPAAHSPWACGPPHWGPQRGPRNAAAA 61
Query: 106 VPGPRSR 112
PGPRSR
Sbjct: 62 RPGPRSR 68
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 56 GSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPG 108
G P GR G R WE SPG + P G G R R GR + SP + G
Sbjct: 92 GGRTPPQQGGRAGMGRASRSWEGSPGEQ-PRGGGAGGRGRR-GRGRGSPHLSG 142
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 50 RTRSRPGSWVRPADRGRRAPGCRLRGWECSPGR-RTPWAGSPGARQERAGRSQLSPAV-- 106
R RPG++V P GRRA G S GR R A A++ R+Q+ PA+
Sbjct: 87 RAGLRPGAFVSPGPLGRRA---SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT 143
Query: 107 --PGPRSRSTCSHG 118
PGP S S G
Sbjct: 144 FSPGPASPPRASPG 157
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 50 RTRSRPGSWVRPADRGRRAPGCRLRGWECSPGR-RTPWAGSPGARQERAGRSQLSPAV-- 106
R RPG++V P GRRA G S GR R A A++ R+Q+ PA+
Sbjct: 87 RAGLRPGAFVSPGPLGRRA---SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT 143
Query: 107 --PGPRSRSTCSHG 118
PGP S S G
Sbjct: 144 FSPGPASPPRASPG 157
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/68 (38%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 46 RLGSRTRSRPGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPA 105
R G RSR SW R R RR R R GRR GS R RS
Sbjct: 410 RSGRHARSRSRSWSRSRSRSRRYSRSRSR------GRRHSGGGSRDG--HRYSRSPARRG 461
Query: 106 VPGPRSRS 113
GPR RS
Sbjct: 462 GYGPRRRS 469
Score = 28.9 bits (63), Expect = 0.94
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 45 SRLGSRTRSRPGSWVRPADRGRRAPGCRLRG---WECSPGRRTPWA-------------- 87
SR SR+RSR + R RGRR G R + SP RR +
Sbjct: 419 SRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDR 478
Query: 88 ---GSPGARQERAGRSQLSPAVPGPRSRS 113
G G R + RS+ S ++ RSRS
Sbjct: 479 YRRGGRGLRHHSSSRSRSSWSLSPSRSRS 507
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.4 bits (67), Expect = 0.32
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 45 SRLGSRTRSRPGSWVRPADR---------GRRAPGCRLRGWECSPGRRTPWAGSPGARQE 95
S+ SRTRSR S RP R RR P R R SP RRTP P +
Sbjct: 282 SKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRP---SPRRRTPPRRMPPPPRH 338
Query: 96 RAGRSQL------SPAVPGPRSRSTCS 116
R RS + S ++ G S S+ S
Sbjct: 339 RRSRSPVRRRRRSSASLSGSSSSSSSS 365
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 45 SRLGSRTRSRPGSWVRPADRGRRAPGCRLRGWEC-SPGRRTPWAGSPGARQERAGRSQLS 103
SRLG R +S SW D+ GW C PG +T GA + G S+
Sbjct: 1578 SRLGLRDQSSGDSWAGTGDQA--------SGWFCVCPGSQTNGGSWGGASGQDVGGSR-- 1627
Query: 104 PAVPGPRSRST 114
PGP ++S+
Sbjct: 1628 ---PGPTNQSS 1635
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 45 SRLGSRTRSRPGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSP 104
SR SR RSR W+R R R P G G +P S G + S +SP
Sbjct: 45 SRSRSRRRSRSLRWLRRRSRSRSRPFS--SGPSGPSGPSSPGGPSSGGASPASEGSAMSP 102
Query: 105 AVPGPRSRS 113
P PRS S
Sbjct: 103 --PPPRSSS 109
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 45 SRLGSRTRSRPGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSP 104
SR SR RSR W+R R R P G G +P S G + S +SP
Sbjct: 45 SRSRSRRRSRSLRWLRRRSRSRSRPFS--SGPSGPSGPSSPGGPSSGGASPASEGSAMSP 102
Query: 105 AVPGPRSRS 113
P PRS S
Sbjct: 103 --PPPRSSS 109
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 45 SRLGSRTRSRPGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSP 104
SR SR RSR W+R R R P G G +P S G + S +SP
Sbjct: 45 SRSRSRRRSRSLRWLRRRSRSRSRPFS--SGPSGPSGPSSPGGPSSGGASPASEGSAMSP 102
Query: 105 AVPGPRSRS 113
P PRS S
Sbjct: 103 --PPPRSSS 109
>gi|38788219 zinc finger protein 428 [Homo sapiens]
Length = 188
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 72 RLRGWECSPGRRTPWAGSPGARQ-ERAGRSQLSPAVPG-PRSRSTC 115
RL G P RR P A P A+ + GRS L A PG P R C
Sbjct: 70 RLGGGRGGPSRRAPRAAQPPAQPCQLCGRSPLGEAPPGTPPCRLCC 115
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 55 PGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPR 110
P S RPA R P R R G T ++ P + S+L PA PGPR
Sbjct: 75 PDSRTRPA---ARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 55 PGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPR 110
P S RPA R P R R G T ++ P + S+L PA PGPR
Sbjct: 75 PDSRTRPA---ARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 55 PGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPR 110
P S RPA R P R R G T ++ P + S+L PA PGPR
Sbjct: 75 PDSRTRPA---ARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 55 PGSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPR 110
P S RPA R P R R G T ++ P + S+L PA PGPR
Sbjct: 75 PDSRTRPA---ARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
>gi|46094051 TSPY-like 4 [Homo sapiens]
Length = 414
Score = 29.6 bits (65), Expect = 0.55
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 77 ECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRS 113
+C P R P AGS G +AG+ P+ G + S
Sbjct: 68 DCGPALRVPVAGSRGGAATKAGQEDAPPSTKGLEAAS 104
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 54 RPGSWVRPADRGRRA----PGCRLRGWE------CSPGRRTPWAGSPGAR 93
RP W R RGRRA P C W CS RT AGS GAR
Sbjct: 147 RPRRWPRAGRRGRRAGACKPSCAGAAWSARGAPLCS--YRTSCAGSCGAR 194
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 29.3 bits (64), Expect = 0.72
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 45 SRLGSRTRSRPGSWVRPADRGR-----------RAPGCRLRGWECSPGRRTPWAGSPGAR 93
+RL + + +RPG W R A G R R P G GAR
Sbjct: 14 ARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGAR 73
Query: 94 QERAGRSQL--SPAVPGPR 110
+ERA L A GPR
Sbjct: 74 RERAAAESLGTQSATLGPR 92
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 29.3 bits (64), Expect = 0.72
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 45 SRLGSRTRSRPGSWVRPADRGR-----------RAPGCRLRGWECSPGRRTPWAGSPGAR 93
+RL + + +RPG W R A G R R P G GAR
Sbjct: 14 ARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGAR 73
Query: 94 QERAGRSQL--SPAVPGPR 110
+ERA L A GPR
Sbjct: 74 RERAAAESLGTQSATLGPR 92
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 29.3 bits (64), Expect = 0.72
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 45 SRLGSRTRSRPGSWVRPADRGR-----------RAPGCRLRGWECSPGRRTPWAGSPGAR 93
+RL + + +RPG W R A G R R P G GAR
Sbjct: 14 ARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGAR 73
Query: 94 QERAGRSQL--SPAVPGPR 110
+ERA L A GPR
Sbjct: 74 RERAAAESLGTQSATLGPR 92
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 29.3 bits (64), Expect = 0.72
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 56 GSWVRPADRGRRAPGCRLRGWECSPGRRTPWAGSPGARQERAGRSQLSPAVPGPRSRSTC 115
GS P RR G LR P P P RQ R + SPA PGP S S
Sbjct: 597 GSPGTPQALPRRLVGSSLRA-PTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPSPV 655
Query: 116 S 116
S
Sbjct: 656 S 656
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,065,111
Number of Sequences: 37866
Number of extensions: 309449
Number of successful extensions: 1450
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 186
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.