Guide to the Human Genome
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Name: LOC100289893 Sequence: fasta or formatted (119aa) NCBI GI: 239747314
Description:

PREDICTED: hypothetical protein XP_002346438

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          7           1
 C cysteine            4.2          5           1
 D aspartate           4.2          5           1
 E glutamate           2.5          3           1
 F phenylalanine       1.7          2           2
 G glycine            12.6         15           1
 H histidine           3.4          4           1
 I isoleucine          2.5          3           1
 K lysine              0.0          0           0
 L leucine             7.6          9           2
 M methionine          1.7          2           1
 N asparagine          2.5          3           1
 P proline             9.2         11           1
 Q glutamine           3.4          4           1
 R arginine           16.8         20           2
 S serine             10.9         13           2
 T threonine           3.4          4           1
 V valine              4.2          5           1
 W tryptophan          2.5          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346438 
LOC100292243          1.000   PREDICTED: hypothetical protein 
LOC100289331          1.000   PREDICTED: hypothetical protein XP_002342134 
LOC100292294          0.034   PREDICTED: hypothetical protein 
LOC100289924          0.034   PREDICTED: hypothetical protein XP_002346722 
LOC100287776          0.034   PREDICTED: hypothetical protein XP_002342571 
PDLIM2                0.030   PDZ and LIM domain 2 isoform 3 
PDLIM2                0.030   PDZ and LIM domain 2 isoform 1 
PDLIM2                0.030   PDZ and LIM domain 2 isoform 2 
C17orf65              0.030   hypothetical protein LOC339201 
CCDC9                 0.030   coiled-coil domain containing 9 
LOC645321             0.026   PREDICTED: hypothetical protein 
LOC645321             0.026   PREDICTED: hypothetical protein 
SFRS16                0.022   splicing factor, arginine/serine-rich 16 
SRRM1                 0.022   serine/arginine repetitive matrix 1 
LOC100292655          0.022   PREDICTED: similar to armadillo repeat containing, ...
LOC100293644          0.022   PREDICTED: hypothetical protein 
LOC100287563          0.022   PREDICTED: hypothetical protein 
LOC100287563          0.022   PREDICTED: hypothetical protein XP_002343733 
ZNF428                0.022   zinc finger protein 428 
LOC100291634          0.022   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.022   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.022   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.022   PREDICTED: hypothetical protein 
TSPYL4                0.022   TSPY-like 4 
C10orf95              0.022   hypothetical protein LOC79946 
LOC100130128          0.017   PREDICTED: hypothetical protein 
LOC100130128          0.017   PREDICTED: hypothetical protein 
LOC100130128          0.017   PREDICTED: hypothetical protein 
SH3BP1                0.017   SH3-domain binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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